LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

Version: 0.99-2
Depends: R (≥ 2.14.0), grid
Imports: genetics, chopsticks
Suggests: rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2
Published: 2016-08-24
Author: Ji-Hyung Shin, Sigal Blay, Nicholas Lewin-Koh, Brad McNeney, Jinko Graham
Maintainer: Brad McNeney <mcneney at sfu.ca>
License: GPL-3
URL: http://stat.sfu.ca/statgen/research/ldheatmap.html
NeedsCompilation: no
Citation: LDheatmap citation info
Materials: ChangeLog
In views: Genetics
CRAN checks: LDheatmap results

Downloads:

Reference manual: LDheatmap.pdf
Vignettes: LDheatmap
LDheatmap adding tracks example
Package source: LDheatmap_0.99-2.tar.gz
Windows binaries: r-devel: LDheatmap_0.99-2.zip, r-release: LDheatmap_0.99-2.zip, r-oldrel: LDheatmap_0.99-2.zip
OS X Mavericks binaries: r-release: LDheatmap_0.99-2.tgz, r-oldrel: LDheatmap_0.99-2.tgz
Old sources: LDheatmap archive

Reverse dependencies:

Reverse depends: gaston
Reverse imports: lmem.gwaser, synbreed

Linking:

Please use the canonical form https://CRAN.R-project.org/package=LDheatmap to link to this page.