Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)
| Version: | 1.0 |
| Date: | 2008-06-07 |
| Author: | Alex Lewin |
| Maintainer: | Alex Lewin <a.m.lewin at imperial.ac.uk> |
| License: | GPL |
| CRAN checks: | LDtests results |
Downloads:
| Package source: | LDtests_1.0.tar.gz |
| MacOS X binary: | LDtests_1.0.tgz |
| Windows binary: | LDtests_1.0.zip |
| Reference manual: | LDtests.pdf |