This package contains functions to carry out processing of high throughput data analysis and detection of putative hits/mutants. Contents include a function for post-hoc quality control for removal of outlier sample sets, a median-based normalization method for use in datasets where there are no explicit controls and where most of the responses are of the wildtype/no response class (see accompanying paper). The package also includes a way to prioritize individuals of interest using am empirical cumulative distribution function. Methods for generating synthetic data as well as data from the Chloroplast 2010 project are included.
|Depends:||R (≥ 2.12.1)|
|Author:||Shannon M. Bell, Lyle D. Burgoon|
|Maintainer:||Shannon M. Bell <bell.shannonm at gmail.com>|
|License:||GPL (≥ 3)|
|CRAN checks:||MIPHENO results|
|Windows binaries:||r-devel: MIPHENO_1.2.zip, r-release: MIPHENO_1.2.zip, r-oldrel: MIPHENO_1.2.zip|
|OS X El Capitan binaries:||r-release: MIPHENO_1.2.tgz|
|OS X Mavericks binaries:||r-oldrel: MIPHENO_1.2.tgz|
|Old sources:||MIPHENO archive|
Please use the canonical form https://CRAN.R-project.org/package=MIPHENO to link to this page.