MKomics: Omics Data Analysis

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007> ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).

Version: 0.5
Depends: R (≥ 3.5.0)
Imports: stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma
Suggests: knitr, rmarkdown
Published: 2020-02-19
Author: Matthias Kohl ORCID iD [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl at stamats.de>
License: LGPL-3
URL: http://www.stamats.de/
NeedsCompilation: no
Citation: MKomics citation info
Materials: NEWS
CRAN checks: MKomics results

Downloads:

Reference manual: MKomics.pdf
Vignettes: MKomics
Package source: MKomics_0.5.tar.gz
Windows binaries: r-devel: MKomics_0.5.zip, r-devel-gcc8: MKomics_0.5.zip, r-release: MKomics_0.5.zip, r-oldrel: MKomics_0.5.zip
OS X binaries: r-release: MKomics_0.5.tgz, r-oldrel: MKomics_0.5.tgz

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