MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, and MetaPhlAn. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Version: 1.0.1
Depends: R (≥ 3.1.0)
Imports: reshape2, plyr, dplyr, data.table, ggplot2, Cairo
Suggests: testthat
Published: 2017-03-02
Author: Pavel Senin [aut, cre]
Maintainer: Pavel Senin <psenin at lanl.gov>
BugReports: https://github.com/seninp-bioinfo/MetaComp/issues
License: GPL-2
URL: https://github.com/seninp-bioinfo/MetaComp
NeedsCompilation: no
Materials: README
CRAN checks: MetaComp results

Downloads:

Reference manual: MetaComp.pdf
Package source: MetaComp_1.0.1.tar.gz
Windows binaries: r-devel: MetaComp_1.0.1.zip, r-release: MetaComp_1.0.1.zip, r-oldrel: MetaComp_1.0.1.zip
OS X Mavericks binaries: r-release: MetaComp_1.0.1.tgz, r-oldrel: MetaComp_1.0.1.tgz

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