MixSIAR: Bayesian Mixing Models in R

Creates and runs Bayesian mixing models to analyze biotracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR', and includes both GUI (graphical user interface) and script versions.

Version: 3.1.7
Depends: R (≥ 3.2.3)
Imports: ggplot2 (≥ 1.0.1), rjags (≥ 4-4), R2jags (≥ 0.5-7), MASS (≥ 7.3), RColorBrewer (≥ 1.1), reshape (≥ 0.8), reshape2 (≥ 1.4.1), lattice (≥ 0.20), compositions (≥ 1.40), ggmcmc (≥ 0.7.2), coda (≥ 0.18-1)
Suggests: gWidgets (≥ 0.0-54), gWidgetsRGtk2 (≥ 0.0-83), splancs (≥ 2.01-38), knitr, rmarkdown, testthat
Published: 2016-08-23
Author: Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb], Jon Moore [ctb], Stuart Bearhop [ctb], Richard Inger [ctb]
Maintainer: Brian Stock <b1stock at ucsd.edu>
BugReports: https://github.com/brianstock/MixSIAR/issues
License: GPL-3
URL: https://github.com/brianstock/MixSIAR
NeedsCompilation: no
SystemRequirements: JAGS (>= 4.1) for the script version, both JAGS and GTK+ for the GUI version. For install instructions, see README file.
Citation: MixSIAR citation info
Materials: README NEWS
CRAN checks: MixSIAR results

Downloads:

Reference manual: MixSIAR.pdf
Vignettes: MixSIAR Script Example (Cladocera)
MixSIAR Script Example (Geese)
MixSIAR Script Example (Isopod)
MixSIAR Script Example (Killer Whale)
MixSIAR Script Example (Lake)
MixSIAR Script Example (Wolves)
Package source: MixSIAR_3.1.7.tar.gz
Windows binaries: r-devel: MixSIAR_3.1.7.zip, r-release: MixSIAR_3.1.7.zip, r-oldrel: MixSIAR_3.1.7.zip
OS X Mavericks binaries: r-release: MixSIAR_3.1.7.tgz, r-oldrel: MixSIAR_3.1.7.tgz
Old sources: MixSIAR archive

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