MonoPhy: Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny

Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.

Version: 1.2
Depends: ape, phytools, phangorn, RColorBrewer, taxize
Suggests: knitr, testthat, spacodiR, rmarkdown
Published: 2016-07-26
Author: Orlando Schwery
Maintainer: Orlando Schwery <oschwery at vols.utk.edu>
License: GPL-3
NeedsCompilation: no
Citation: MonoPhy citation info
Materials: README
CRAN checks: MonoPhy results

Downloads:

Reference manual: MonoPhy.pdf
Vignettes: MonoPhy Tutorial
Package source: MonoPhy_1.2.tar.gz
Windows binaries: r-devel: MonoPhy_1.2.zip, r-release: MonoPhy_1.2.zip, r-oldrel: MonoPhy_1.2.zip
OS X Mavericks binaries: r-release: MonoPhy_1.2.tgz, r-oldrel: MonoPhy_1.2.tgz
Old sources: MonoPhy archive

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