Version 0.6-1 - bugfix: fixed plyr namespace imports - bugfix: fixed runModels log file when NULL - corrected line length problems in documentation. - deleted old createTable routine (not used). - removed fields to extract from extractSummaries_1file (not useful). Version 0.6 - feature: create Mplus model objects, automatically create and run models using mplusModeler - feature: generate code for residual covariance structures for latent growth models using mplusRcov - feature: initial support for extracting standardized confidence intervals. - feature: extract all details of bootstrapped likelihood ratio test. - feature: initial support for extracting IRT parameterization model results (see $irt.parameterization). - added basic documentation for functions including internal functions - support 6-column output from multiple imputation analyses that contain "rate of missing" column. - fixes to quiet scan commands (thanks to Mikko Ronkko) - fixes to use of system call on Mac/Unix (thanks to Mikko Ronkko) - move to rhdf5 package (hdf5 no longer maintained) Version 0.5-4 - feature: readModels extracts warnings and errors. - feature: prepareMplusData now optionally allows for a .inp to be written or for interactive selection of a filename. - feature: readModels now stores (somewhat) parsed Mplus input syntax in $input (read from the INPUT INSTRUCTIONS in .out file). - feature: readModels now parses error messages from Monte Carlo output (TECH9) into tech9. - feature: Mplus software version now extracted as Mplus.version in model summaries. - feature: showSummaryTable, LatexSummaryTable, and HTMLSummaryTable now accept model lists from readModels (no need to extract summaries from each). - feature: readModels extracts SAMPLE STATISTICS FOR ESTIMATED FACTOR SCORES section associated with PLOT3 into fac_score_stats. - feature: extractTech1 now parses TAU(U) sections in mixture models with class-varying thresholds. - refactored SAVEDATA parsing to handle Mplus v7 output, which reordered sections in some cases. - to enhance formatting, createModels no longer strips blank lines from the template file. Thanks to Ronkko Mikko for the suggestion. - bugfix: createModels value lookup during init processing was broken. Thanks to Ronkko Mikko for the bugfix. - bugfix: finding the end of the input was failing when an error was encountered in Mplus parsing the input. - bugfix: plyr 1.8 rbind.fill no longer accepts NULL inputs, which was breaking model summary extraction. - bugfix: reading savedata files was failing for Monte Carlo output when files could not be found. - bugfix: support 7-column format for BAYES output that includes significance column. Version 0.5-3 - bugfix: in runModels, Mplus_command with spaces would cause error because not quoted. - bugfix: testBParamConstraint and testBParamCompoundConstraint did not appropriately combine mcmc lists. - feature: readModels extracts TECH3 output from SAVEDATA: TECH3. Stored in $tech3$paramCov.savedata when available. (Thanks to Joe Glass for code to extract free format matrices.) - feature: testBParamCompoundConstraint and testBParamConstraint now accept mplus.model object (from readModels). - feature: mplus.traceplot to plot the MCMC chain convergence for Bayesian models that have a gh5 file and PLOT: TYPE=PLOT2. (Thanks to Joe Glass for initial plotting code.) - include empty gh5 list if unable to read. Version 0.5-2 - feature: divide BPARAMETERS by MCMC chain and separate burn-in (first half) versus valid draw (second half). (Adapted from code and insights graciously provided by Florian Boeing-Messing.) - feature: Bparameters stored as mcmc.list to promote compatibility with coda package (coda now imported). (Thanks to Davood Tofighi for the suggestion.) - feature: readModels imports corresponding gh5 file, if it exists, into list element gh5 (requires hdf5 package). - feature: readModels extracts TECH3 parameter covariance and correlation matrices from output, when available (OUTPUT: TECH3). - feature: readModels extracts latent class counts and probabilities (only works for models with one categorical latent variable). - bugfix: Corrected failure to identify "SAMPLE STATISTICS FOR ESTIMATED FACTOR SCORES" header. - bugfix: Chi-square difference test for MLR based on LL did not work for models with only LL and Parameters. - bugfix: Scales section of model parameters was not being read properly. - bugfix: matrixExtract (tech1, residuals, etc.) now handles blank section appropriately. - updated MplusAutomation Examples vignette to reflect greater functionality of readModels. Version 0.5-1 - TECH1, RESIDUALS, and TECH4 extraction now support latent class models and multilevel models - Added extraction of GAMMA(C) and ALPHA(C) to TECH1 routines. - Extracts chi-square difference test results computed using DIFFTEST. - compareModels prints DIFFTEST results when available. - bugfix: compareModels now prints RMSEA by default when available. - remove dependency on reshape package. - Extraction of conditional latent class means, auxiliary(e), now supported by readModels. - Workaround for bparameters extraction where Mplus does not include categorical latent variable means. - bugfix: readModels TECH1 output now extracted properly for TYPE=IMPUTATION. Version 0.5 - new function compareModels to compare model summaries and parameters. - compareModels supports chi-square difference testing using diffTest=TRUE. - extraction of TECH11 output supported by extractModelSummaries. - extraction of TECH1 output supported by readModels. - added utility function lookupTech1Parameter to find a given parameter number in output. - extraction of TECH4 output supported by readModels. - extraction of RESIDUALS output supported by readModels. - extractModelSummaries now reads summaries (e.g., DIC) from ESTIMATOR=BAYES output. - getSavedata_Fileinfo now supports extraction of Monte Carlo variable names. - getSavedata_Data now automatically extracts Monte Carlo/Multiple Imputation data as a list. - removed wine as default for running Mplus on Linux now that Mplus is native for Linux. - specify runModels default mplus location on Mac as /Applications/Mplus/mplus. - several updates to MplusAutomation Vignette. - showSummaryTable allows user to specify font. - added more examples to R help files. - bugfix: getSavedata_Data was calling read.table instead of read.fwf after Bparams code was added. - bugfix: iterator tags nested within other tag types in template init section were not replaced by createModels. - bugfix: getSection now identifies SAVEDATA INFORMATION header correctly. Version 0.4-3 - throw specific error when createModels encounters a template file with no body tags (come back later to allow for this). - changed names of return list from getSavedata_Fileinfo: breaks compatibility. - initial support of reading Bayesian parameters from SAVEDATA BPARAMETERS command. - provide inequality constraint tests for bayesian parameter estimates: van de Schoot, Hoijtink, Hallquist, & Boelen, submitted. - initial support of model parameter extraction for Monte Carlo output (MONTECARLO: and MODEL POPULATION:) using extractModelParameters. - initial support of unstandardized confidence interval output from OUTPUT:CINTERVAL (thanks to Stephen Tueller for initial development of this) - reworked detection of major output sections to match a fixed list of options (decrease ambiguity) - bugfix: extractModelParameters correctly handles nonconverged output, where only estimates are available. - savedata file information now included in readModels list in element savedata_info. Version 0.4-2 - initial support for extracting model modification indices, when available: extractModIndices - bugfix: Corrected problem with extractModelSummaries failing when analysis or data sections were at the end of the input. - bugfix: Corrected whitespace stripping for cases where leading and trailing space is present. Version 0.4-1 - initial support for extracting fit statistics from DATA: TYPE=MONTECARLO output (external Monte Carlo) - show summary routines now check to make sure that all columns requested are present in the summary data.frame. - show summary routines now check for the sortBy column for cases where the sort field is missing. - bugfix: properly handle blank sections in model results output. - bugfix: getSavedata_Fileinfo now properly handles relative and absolute paths in the savedata location. - better debug output for extractModelParameters. Version 0.4 - unified model parsing function readModels() implemented. Returns list of summaries, parameters, and savedata output. - completely refactored extractModelSummaries. Now handles more summary statistics, including initial support of MI output. - extractModelSummaries now drops any fields that are all missing. - preliminary support for extracting model summary statistics from EFA output. - bugfix: warning for missing LL now falls appropriately after extraction of estimator in extractModelSummaries - bugfix: grabResultsSection failed when there was more than one match for a section header. - bugfix: extractModelSummaries now correctly extracts SRMR for multilevel models. - extractModelSummaries now retains only the filename, not the path, in the Filename field. - bugfix: getSavedata_Data now properly handles output file located in the working directory. - changed getSavedata_Data to give a warning, not error, when save data not present in output. - restrict extractModelSummaries function to TESTS OF MODEL FIT output. - bugfix: prepareMplusData now correctly converts factors to numbers. - bugfix: prepareMplusData converts periods in variable names to underscores. - reorganized source files for improved clarity Version 0.3-3 - extractModelParameters extracts 6-column output from estimator=bayes models (Mplus V6). - extractModelParameters supports (most) older output format from Mplus 4.2 and later. - extractModelParameters function now accepts a single output file or a directory, like extractModelSummaries. Return a list if multiple files. - extractModelParameters now extracts unstandardized and standardized results, where available. Returns a list. resultType is deprecated. - extractModelParameters now extracts constraints listed under "New/Additional Parameters". - bugfix: extractModelParameters omitted latent class regression coefficients in mixture models. - bugfix: extractModelParameters could not locate section end for some standardized parameters. - bugfix: extractModelParameters failed to identify latent class membership with multiple categorical latent variables. - Changed runModels to limit Windows-specific command line tweaks to R running on Windows computers. - Removed InputInstructions from extractModelSummaries routine. Made output too cluttered. - In extractModelSummaries routine, only warn about missing log-likelihood for ML estimators. - Changed runModels_Interactive to use native TCL directory browser on non-Windows machines. - Improved runModels_Interactive to place log file in same directory as run target, unless otherwise selected. - Changed Mplus call in runModels to use relative filename after changing to the proper directory (improves Linux runs). - bugfix: corrected runModels attempt to write log file when NULL specified. - plyr 1.0 hid (and changed) the splitter_a function, which made createModels fail. Replaced splitter_a with homespun function. Version 0.3-2 - Added prepareMplusData convenience function, used to export data from R to Mplus. - Fixed bug in updateCurrentValues that would stop the createModels pipeline when there were no array tags in the init. - Fixed bug in processConditionalTags that would delete the body section when there were no matching tags. Version 0.3-1 - Removed two browser calls from processInit that were causing pauses in createModels. - Reduced console output from createModels (no more "current iterator is" output) - Refactored extractModelParameters to handle complex outputs (e.g., multiple groups with twolevel) - Refactored extractModelParameters to read standardized estimates from WLS and MUML estimators. Version 0.3 - Corrected bug with getSaveData_Fileinfo not reading integer-format variables (e.g., I5). - Includes first implementation of Mplus template language: createModels function. - Improved handling of runModels log file. Was closing the file before exitRun had completed. - Fixed bug in isLogOpen that caused it to error when logFile was NULL. - Improved parameter checking in splitFilePath - Removed createTable function (now divided into LatexSummaryTable, HTMLSummaryTable, and showSummaryTable functions) - Updated Vignette for Mplus template language. Version 0.2-5 - Extracts Baseline Chi-square, SRMR, and WRMR using extractModelSummaries. - Allows target for extractModelSummaries to be a single file or a directory. - extractModelParameters now successfully extracts multiple group analyses. - Fixed minor bug in extractModelParameters for calculating keyword match length. - Fixed minor bug in regular expression for parseChunk matching leading/trailing spaces (handled by strip.white). Version 0.2-4 - Added package vignette (in the inst/doc directory). - Included NEWS file. - Added flush commands to log file writing in runModels to allow for progress tracking. Version 0.2-3 - Separated table-creating functions (previously createTable) into three related routines: showSummaryTable, HTMLSummaryTable, and LatexSummaryTable. createTable will be removed in future versions of the package. Version 0.2-2 - Improved extractModelSummaries function to allow for summary statistics located across multiple lines. New summaries include model chi-square, RMSEA, CFI, and TLI. - Corrected a bug in extractValue that did not select the correctly utilize match.length from regexpr (failure to subtract 1 in substr).