NAM: Nested Association Mapping

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

Version: 1.5.5
Depends: R (≥ 3.2.0)
Imports: Rcpp, randomForest
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, lme4, glmnet
Published: 2018-02-11
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav at>
License: GPL-3
NeedsCompilation: yes
Citation: NAM citation info
CRAN checks: NAM results


Reference manual: NAM.pdf
Vignettes: Introduction to NAM
Background for Meta-analysis
Package source: NAM_1.5.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: NAM_1.5.5.tgz
OS X Mavericks binaries: r-oldrel: NAM_1.5.4.tgz
Old sources: NAM archive

Reverse dependencies:

Reverse imports: SoyNAM


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