OutbreakTools: basic tools for the analysis of disease outbreaks

basic tools for the analysis of disease outbreaks.

Version: 0.1-11
Depends: R (≥ 3.0.0), methods, ggplot2, network, knitr
Imports: utils, RColorBrewer, ape, reshape2, sna, plyr, ggmap, scales, rjson, networkDynamic
Suggests: EpiEstim
Published: 2014-08-11
Author: The Hackout team (In alphabetic order: David Aanensen, Marc Baguelin, Paul Birrell, Simon Cauchemez, Anton Camacho, Caroline Colijn, Anne Cori, Xavier Didelot, Ken Eames, Christophe Fraser, Simon Frost, Niel Hens, Joseph Hugues, Thibaut Jombart, Lulla Opatowski, Oliver Ratmann, Samuel Soubeyrand, Marc Suchard, Jacco Wallinga, Rolf Ypma)
Maintainer: Thibaut Jombart <t.jombart at imperial.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: ChangeLog
In views: Phylogenetics
CRAN checks: OutbreakTools results

Downloads:

Reference manual: OutbreakTools.pdf
Vignettes: Handling disease outbreak data
Package source: OutbreakTools_0.1-11.tar.gz
Windows binaries: r-devel: OutbreakTools_0.1-11.zip, r-release: OutbreakTools_0.1-11.zip, r-oldrel: OutbreakTools_0.1-11.zip
OS X Snow Leopard binaries: r-release: OutbreakTools_0.1-11.tgz, r-oldrel: OutbreakTools_0.1-11.tgz
OS X Mavericks binaries: r-release: OutbreakTools_0.1-11.tgz
Old sources: OutbreakTools archive