PAC: Partition-Assisted Clustering and Multiple Alignments of Networks

Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.

Version: 1.0.8
Imports: Rcpp (≥ 0.12.2), igraph, parmigene, infotheo, dplyr
LinkingTo: Rcpp
Suggests: knitr, NMF
Published: 2017-04-30
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <ywli at stanford.edu>
License: GPL-3
URL: http://biorxiv.org/content/early/2017/03/28/116566
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: PAC results

Downloads:

Reference manual: PAC.pdf
Vignettes: Using the PAC package
Package source: PAC_1.0.8.tar.gz
Windows binaries: r-devel: PAC_1.0.8.zip, r-release: PAC_1.0.8.zip, r-oldrel: PAC_1.0.8.zip
OS X El Capitan binaries: r-release: PAC_1.0.8.tgz
OS X Mavericks binaries: r-oldrel: PAC_1.0.8.tgz
Old sources: PAC archive

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