PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees

Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.

Version: 1.0.7
Depends: R (≥ 3.0.0)
Imports: phytools, ape
Published: 2016-05-16
Author: Timothy Stephens [aut, cre, trl] (R port), Debashish Bhattacharya [aut], Mark Ragan [aut], Cheong Xin Chan [aut, cph] (Original Perl implementation)
Maintainer: Timothy Stephens <timothy.stephens1 at uqconnect.edu.au>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: PhySortR results

Downloads:

Reference manual: PhySortR.pdf
Package source: PhySortR_1.0.7.tar.gz
Windows binaries: r-devel: PhySortR_1.0.7.zip, r-release: PhySortR_1.0.7.zip, r-oldrel: PhySortR_1.0.7.zip
OS X El Capitan binaries: r-release: PhySortR_1.0.7.tgz
OS X Mavericks binaries: r-oldrel: PhySortR_1.0.7.tgz
Old sources: PhySortR archive

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