PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses

Provides efficient tools for population genomics data analysis, able to process individual loci, large sets of loci, or whole genomes. PopGenome not only implements a wide range of population genetics statistics, but also facilitates the easy implementation of new algorithms by other researchers. PopGenome is optimized for speed via the seamless integration of C code.

Version: 2.1.6
Depends: R (≥ 2.14.2), ff
Imports: methods
Suggests: parallel, bigmemory, BASIX, WhopGenome
Published: 2015-05-04
Author: Bastian Pfeifer [aut, cre], Ulrich Wittelsbuerger [ctb], Heng Li [ctb], Bob Handsaker [ctb]
Maintainer: Bastian Pfeifer <Bastian.Pfeifer at uni-duesseldorf.de>
License: GPL-3
Copyright: inst/COPYRIGHTS
PopGenome copyright details
URL: http://popgenome.weebly.com
NeedsCompilation: yes
SystemRequirements: zlib headers and library.
Citation: PopGenome citation info
Materials: NEWS
CRAN checks: PopGenome results

Downloads:

Reference manual: PopGenome.pdf
Vignettes: An introduction to the PopGenome package
Integration of new Methods
Whole genome analyses using VCF files
Package source: PopGenome_2.1.6.tar.gz
Windows binaries: r-devel: PopGenome_2.1.6.zip, r-release: PopGenome_2.1.6.zip, r-oldrel: PopGenome_2.1.5.zip
OS X Snow Leopard binaries: r-release: PopGenome_2.1.0.tgz, r-oldrel: PopGenome_2.1.0.tgz
OS X Mavericks binaries: r-release: PopGenome_2.1.6.tgz
Old sources: PopGenome archive

Reverse dependencies:

Reverse suggests: GeneFeST