RAM: R for Amplicon-Sequencing-Based Microbial-Ecology

Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.

Depends: vegan, ggplot2, stats
Imports: RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, gridExtra, ggmap, permute, VennDiagram, data.table, FD, MASS, RgoogleMaps, lattice, reshape, ade4, phangorn, phytools, utils, graphics, grDevices, ape
Suggests: testthat, mapproj, gtable, indicspecies, Heatplus
Published: 2016-01-02
Author: Wen Chen, Joshua Simpson, C. Andre Levesque
Maintainer: Wen Chen <Wen.Chen at agr.gc.ca>
BugReports: https://bitbucket.org/Wen_Chen/ram_releases/issues/
License: MIT + file LICENSE
Copyright: Government of Canada
URL: http://cran.r-project.org/package=RAM, https://bitbucket.org/Wen_Chen/ram_releases/src/
NeedsCompilation: no
Citation: RAM citation info
Materials: NEWS ChangeLog
CRAN checks: RAM results


Reference manual: RAM.pdf
Package source: RAM_1.2.1.3.tar.gz
Windows binaries: r-devel: RAM_1.2.1.3.zip, r-release: RAM_1.2.1.3.zip, r-oldrel: RAM_1.2.1.3.zip
OS X Mavericks binaries: r-release: RAM_1.2.1.3.tgz, r-oldrel: RAM_1.2.1.3.tgz
Old sources: RAM archive