RSNPset: RSNPset

RSNPset is a software implementation of the use of efficient score statistics in genome-wide SNP set analysis with complex traits. The package provides three standard score statistics (Cox, Binomial, and Gaussian) but is easily extensible to include others. Code implementing the inferential procedure is primarily written in C++ and utilizes parallelization of the analysis to reduce runtime. A supporting function offers simple computation of observed, permutation, and FWER and FDR adjusted p-values.

Version: 0.2
Imports: fastmatch (≥ 1.0-4), foreach (≥ 1.4.1), doRNG (≥ 1.5.3), qvalue (≥ 1.34), Rcpp (≥ 0.10.4)
LinkingTo: Rcpp, RcppEigen
Suggests: knitr
Published: 2014-06-10
Author: Chanhee Yi, Alexander Sibley, and Kouros Owzar
Maintainer: Chanhee Yi <chanhee.yi at dm.duke.edu>
License: GPL-3
NeedsCompilation: yes
CRAN checks: RSNPset results

Downloads:

Reference manual: RSNPset.pdf
Vignettes: rsnpset
Package source: RSNPset_0.2.tar.gz
Windows binaries: r-devel: RSNPset_0.2.zip, r-release: RSNPset_0.2.zip, r-oldrel: RSNPset_0.2.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: RSNPset_0.2.tgz