RbioRXN: RbioRXN - process Rhea and MetaCyc (BioCyc, EcoCyc) biochemical reaction data

RbioRXN is an R package that facilitates retrieving and processing biochemical reaction data such as Rhea, MetaCyc, BioCyc and EcoCyc. The package provides various functions to download and parse data, instantiate generic reaction, interchange compound ID among well-known biochemical databases (e.g. KEGG, PubChem, and ChEBI) and check mass balance. The package aims to construct an integrated metabolic network and genome-scale metabolic model.

Version: 1.1
Depends: R (≥ 2.0.0), gdata, CHNOSZ, hash, foreach
Published: 2014-01-05
Author: Byoungnam Min, Kyoung Heon Kim and In-Geol Choi
Maintainer: Byoungnam Min <mbnmbn00 at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: RbioRXN results


Reference manual: RbioRXN.pdf
Package source: RbioRXN_1.1.tar.gz
OS X binary: RbioRXN_1.1.tgz
Windows binary: RbioRXN_1.1.zip
Old sources: RbioRXN archive