Rsampletrees: MCMC Sampling of Gene Genealogies Conditional on Genetic Data

Sample ancestral trees conditional on phased or unphased SNP genotype data. The actual tree sampling is done using a C++ program that is launched within R. The package also contains functions for specifying the tree-sampling settings (pre-processing) and for storing and manipulating the sampled trees (post-processing). More information about 'sampletrees' can be found at <http://stat.sfu.ca/statgen/research/sampletrees.html>.

Version: 1.0
Imports: Rcpp (≥ 0.12.9), haplo.stats, ape
LinkingTo: Rcpp
Published: 2017-04-18
Author: Kelly Burkett, Brad McNeney, Jinko Graham, Jean-Francois Lefebvre
Maintainer: Jean-Francois Lefebvre <jflefebvre27 at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: Rsampletrees results

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Reference manual: Rsampletrees.pdf
Package source: Rsampletrees_1.0.tar.gz
Windows binaries: r-devel: Rsampletrees_1.0.zip, r-release: Rsampletrees_1.0.zip, r-oldrel: Rsampletrees_1.0.zip
OS X El Capitan binaries: r-release: Rsampletrees_1.0.tgz
OS X Mavericks binaries: r-oldrel: Rsampletrees_1.0.tgz
Old sources: Rsampletrees archive

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