Rtapas: Random Tanglegram Partitions

Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See Llaberia-Robledillo et al. (2022, <doi:10.1101/2022.05.17.492291>).

Version: 0.9
Depends: phytools, parallel, R (≥ 3.5.0)
Imports: ape, distory, GiniWegNeg, paco, stats, vegan, stringr, parallelly
Suggests: testthat (≥ 3.0.0)
Published: 2022-06-14
Author: Mar Llaberia-Robledillo ORCID iD [aut, cre, cph], Juan A. Balbuena ORCID iD [aut, cph]
Maintainer: Mar Llaberia-Robledillo <mar.llaberia at uv.es>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: Rtapas results


Reference manual: Rtapas.pdf


Package source: Rtapas_0.9.tar.gz
Windows binaries: r-devel: Rtapas_0.9.zip, r-release: Rtapas_0.9.zip, r-oldrel: not available
macOS binaries: r-release (arm64): Rtapas_0.9.tgz, r-oldrel (arm64): Rtapas_0.9.tgz, r-release (x86_64): Rtapas_0.9.tgz, r-oldrel (x86_64): Rtapas_0.9.tgz


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