SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

An accurate and easy tool for performing trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.

Version: 1.0
Depends: R (≥ 3.0.0)
Imports: dplyr, fitdistrplus, grDevices, ggplot2 (≥ 2.0), magrittr, MASS, mclust, Rcpp, pbapply, pheatmap, princurve, purrr, ranger, RColorBrewer, reshape2, splines, stats, testthat, tidyr, TSP, utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown
Published: 2017-09-15
Author: Robrecht Cannoodt [aut, cre]
Maintainer: Robrecht Cannoodt <robrecht.cannoodt at gmail.com>
BugReports: https://github.com/rcannood/SCORPIUS/issues
License: GPL-3
URL: http://github.com/rcannood/SCORPIUS
NeedsCompilation: yes
CRAN checks: SCORPIUS results

Downloads:

Reference manual: SCORPIUS.pdf
Vignettes: Investigating dendritic cell maturation in dendritic cell progenitors
Trajectory inference from simulated data
Package source: SCORPIUS_1.0.tar.gz
Windows binaries: r-devel: SCORPIUS_1.0.zip, r-release: SCORPIUS_1.0.zip, r-oldrel: SCORPIUS_1.0.zip
OS X binaries: r-release: SCORPIUS_1.0.tgz, r-oldrel: SCORPIUS_1.0.tgz

Linking:

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