SKAT: SNP-Set (Sequence) Kernel Association Test

Functions for kernel regression based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently computes SNP-set level p-values, while adjusting for covariates.

Version: 1.0.7
Depends: R (≥ 2.13.0)
Published: 2015-04-19
Author: Seunggeun (Shawn) Lee, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <leeshawn at umich.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: SKAT results

Downloads:

Reference manual: SKAT.pdf
Vignettes: SKAT
Package source: SKAT_1.0.7.tar.gz
Windows binaries: r-devel: SKAT_1.0.7.zip, r-release: SKAT_1.0.7.zip, r-oldrel: SKAT_1.0.7.zip
OS X Snow Leopard binaries: r-release: SKAT_1.0.7.tgz, r-oldrel: SKAT_1.0.7.tgz
OS X Mavericks binaries: r-release: SKAT_1.0.7.tgz
Old sources: SKAT archive

Reverse dependencies:

Reverse imports: MetaSKAT
Reverse suggests: seqMeta, seqminer, skatMeta