0.9.13 25-Feb-2013 Xiuwen Zheng * Disable parallel functions in the Windows version of SNPRelate, until the internal multi-thread funcitons are replacted by the functions in win-pthreads * Fix compiling issues in the Windows version of SNPRelate 0.9.12 27-Feb-2013 Xiuwen Zheng * add 'GetRNGstate' and 'PutRNGstate' to the C function 'gnrDistPerm' * remove the upper limit of 200 chromosomes in 'snpgdsVCF2GDS' according to scaffolds/contigs from a de novo assembly not chromosomes * improves 'snpgdsSummary' 0.9.11 30-Jan-2013 Xiuwen Zheng * bug fix in 'snpgdsVCF2GDS': to use "\t" as the field separator character * bug fixes according to gdsfmt v0.9.11 * improve the vignette 0.9.10 22-Jan-2013 Xiuwen Zheng * bug fixes in 'snpgdsPairIBD' 0.9.9 04-Jan-2013 Xiuwen Zheng * add a new argument 'family' to 'snpgdsBED2GDS' * improve 'snpgdsCutTree' * add a new function 'snpgdsDrawTree' * add an argument 'option' to the function 'snpgdsBED2GDS' * output chromosome codes according to 'snpgdsOption' in 'snpgdsGDS2BED' 0.9.8 28-Sep-2012 Xiuwen Zheng * add an alternative method extracting variants from a VCF file in 'snpgdsVCF2GDS' * support multiple files in 'snpgdsVCF2GDS' * add 'snpgdsOption' * add 'snpgdsHCluster' * add 'snpgdsCutTree' * add 'snpgdsDiss' 0.9.7 30-Aug-2012 Xiuwen Zheng * fix an important bug of missing genotypes in 'snpgdsVCF2GDS' * fix a bug in 'snpgdsGDS2BED' (output 23, 24, ..., instead of X, Y, XY) * fix a bug in 'snpgdsCombineGeno' (due to duplicate SNPs) * 'snpgdsLDpair' provides haplotype frequency estimates * 'snpgdsLDMat' allows specifying sliding window size * add RUnit tests * add a vignette 0.9.6 22-Jul-2012 Xiuwen Zheng * add functions to 'snpgdsIBDMLE' and 'snpgdsIBDMoM' * add a new function 'snpgdsVCF2GDS' 0.9.1-0.9.5 25-Apr-2012 Xiuwen Zheng * fix minor bugs 0.9.0 03-Aug-2011 Xiuwen Zheng * first public release of SNPRelate