SeqFeatR: Calculates possible epitopes and co-mutations

Package includes functions to analyse sequence data in FASTA Format with known HLA types or other features and calculate in the case of HLA as feature possible epitopes from them. Further it calculates possible co-mutations from these sequences and generates graphical output in PDF.

Version: 0.1.5
Depends: R (≥ 3.1.0), tcltk, tcltk2, Biostrings, plotrix, ape
Imports: plyr, phangorn, qvalue, widgetTools
Suggests: xtable
Published: 2014-06-10
Author: Bettina Budeus
Maintainer: Bettina Budeus <bettina.budeus at stud.uni-due.de>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: SeqFeatR results

Downloads:

Reference manual: SeqFeatR.pdf
Package source: SeqFeatR_0.1.5.tar.gz
Windows binaries: r-devel: SeqFeatR_0.1.5.zip, r-release: SeqFeatR_0.1.5.zip, r-oldrel: not available
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: not available