SeqGrapheR: Simple GUI for Graph Based Visualization of Cluster of DNA Sequence Reads

The SeqGrapheR package provide interactive GUI for visualization of DNA sequence clusters. Details and principles of usage are described in user manual and (2010 BMC Bioinformatics 11:378). For full functionality installed NCBI blast is required.

Version: 0.4.8.5
Depends: R (≥ 2.14.0)
Imports: Biostrings, igraph, rggobi, gWidgets, gWidgetsRGtk2, cairoDevice
Published: 2015-07-20
Author: Petr Novak
Maintainer: Petr Novak <petr at umbr.cas.cz>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
SystemRequirements: ggobi
CRAN checks: SeqGrapheR results

Downloads:

Reference manual: SeqGrapheR.pdf
Vignettes: User Manual
Package source: SeqGrapheR_0.4.8.5.tar.gz
Windows binaries: r-devel: SeqGrapheR_0.4.8.5.zip, r-release: SeqGrapheR_0.4.8.5.zip, r-oldrel: SeqGrapheR_0.4.8.5.zip
OS X Mavericks binaries: r-release: not available, r-oldrel: not available
Old sources: SeqGrapheR archive