Takes a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip labels and p-values, and determines the significance of the branches (families of p-values) and plots the tree with colored branches (corresponding to families) according to their levels of significance. Also produces a CSV file with the p-values of all of the branches as well as which tips belong to which branches. Finally, it exports a file that can be opened in FigTree that produces a colored plot (colored branches according to their significance of corresponding groups of p-values) with p-value annotations.
|Imports:||ape, phylobase, phyext2, RColorBrewer, phyloseq, graphics, utils, stats|
|Author:||John R. Stevens and Todd R. Jones|
|Maintainer:||John R. Stevens <john.r.stevens at usu.edu>|
|Citation:||SigTree citation info|
|CRAN checks:||SigTree results|
SigTree Tutorial Vignette
|Windows binaries:||r-devel: SigTree_1.10.3.zip, r-release: SigTree_1.10.3.zip, r-oldrel: SigTree_1.10.3.zip|
|OS X Mavericks binaries:||r-release: SigTree_1.10.3.tgz, r-oldrel: not available|
|Old sources:||SigTree archive|
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