Sysrecon: Systematical Metabolic Reconstruction

In the past decade, genome-scale metabolic reconstructions have widely been used to comprehend the systems biology of metabolic pathways within an organism. Different GSMs are constructed using various techniques that require distinct steps, but the input data, information conversion and software tools are neither concisely defined nor mathematically or programmatically formulated in a context-specific manner.The tool that quantitatively and qualitatively specifies each reconstruction steps and can generate a template list of reconstruction steps dynamically selected from a reconstruction step reservoir, constructed based on all available published papers.

Version: 0.1.2
Depends: R (≥ 3.5.0)
Imports: ape, dplyr, ggplot2, ggtree, methods, patchwork, plyr, RColorBrewer, readr, readxl, rlang, SnowballC, stats, stringr, tidyverse, tm
Published: 2022-11-13
Author: Shilin Ouyang [aut, cre], Zihao Li [aut], Jiamin Hu [aut], Miyuan Cao [aut], Feng Yu [aut], Longfei Mao [aut], RStudio [cph, fnd]
Maintainer: Shilin Ouyang <ouyangshilin at>
License: GPL-3
NeedsCompilation: no
CRAN checks: Sysrecon results


Reference manual: Sysrecon.pdf


Package source: Sysrecon_0.1.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): Sysrecon_0.1.2.tgz, r-oldrel (arm64): Sysrecon_0.1.2.tgz, r-release (x86_64): Sysrecon_0.1.2.tgz, r-oldrel (x86_64): Sysrecon_0.1.2.tgz
Old sources: Sysrecon archive


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