TPEA: A Novel Topology-Based Pathway Enrichment Analysis Approach

We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in Kyoto Encyclopedia of Genes and Genomes Database. We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.

Version: 3.0
Depends: R (≥ 2.10), MESS, Matrix, foreach
Imports: XML, RCurl, utils, igraph
Published: 2017-01-03
Author: Wei Jiang
Maintainer: Wei Jiang <jiangwei at>
License: GPL-2
NeedsCompilation: no
CRAN checks: TPEA results


Reference manual: TPEA.pdf
Package source: TPEA_3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: TPEA_3.0.tgz, r-oldrel: TPEA_3.0.tgz
Old sources: TPEA archive


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