TREXr: Tree Sap Flow Extractor

Performs data assimilation, processing and analyses on sap flow data obtained with the thermal dissipation method (TDM). The package includes functions for gap filling time-series data, detecting outliers, calculating data-processing uncertainties and generating uniform data output and visualisation. The package is designed to deal with large quantities of data and to apply commonly used data-processing methods. The functions have been validated on data collected from different tree species across the northern hemisphere (Peters et al. 2018 <doi:10.1111/nph.15241>).

Version: 1.0.0
Depends: R (≥ 3.5.0)
Imports: chron, zoo, solaR, stats, graphics, lubridate, utils, grDevices, lhs, doParallel, foreach, tibble, dplyr, sensitivity, randtoolbox, boot, doSNOW, msm, parallel, magrittr, tools
Suggests: shiny, plotly
Published: 2021-03-24
Author: Richard Peters ORCID iD [cre, aut, cph], Christoforos Pappas ORCID iD [aut, ctb], Alexander Hurley ORCID iD [aut, cph], Rafael Poyatos [ctb], Victor Flo [ctb], Roman Zweifel [ctb], Willem Goossens [ctb], Kathy Steppe [ths, etr, fnd]
Maintainer: Richard Peters <richardlouispeters3 at>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: TREXr citation info
Materials: README
CRAN checks: TREXr results


Reference manual: TREXr.pdf
Package source: TREXr_1.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: TREXr_1.0.0.tgz, r-oldrel: TREXr_1.0.0.tgz


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