aaSEA: Amino Acid Substitution Effect Analyser

Given a protein multiple sequence alignment, it is daunting task to assess the effects of substitutions along sequence length. 'aaSEA' package is intended to help researchers to rapidly analyse property changes caused by single, multiple and correlated amino acid substitutions in proteins. Methods for identification of co-evolving positions from multiple sequence alignment are as described in : Pelé et al., (2017) <doi:10.4172/2379-1764.1000250>.

Version: 1.1.0
Depends: R (≥ 3.4.0)
Imports: DT (≥ 0.4), networkD3 (≥ 0.4), shiny (≥ 1.0.5), shinydashboard (≥ 0.7.0), magrittr (≥ 1.5), Bios2cor (≥ 2.0), seqinr (≥ 3.4-5), plotly (≥ 4.7.1), Hmisc (≥ 4.1-1)
Suggests: knitr, rmarkdown
Published: 2019-11-09
Author: Raja Sekhara Reddy D.M
Maintainer: Raja Sekhara Reddy D.M <raja.duvvuru at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: aaSEA results


Reference manual: aaSEA.pdf
Vignettes: aaSEA Documentation


Package source: aaSEA_1.1.0.tar.gz
Windows binaries: r-devel: aaSEA_1.1.0.zip, r-release: aaSEA_1.1.0.zip, r-oldrel: aaSEA_1.1.0.zip
macOS binaries: r-release (arm64): aaSEA_1.1.0.tgz, r-release (x86_64): aaSEA_1.1.0.tgz, r-oldrel: aaSEA_1.1.0.tgz
Old sources: aaSEA archive


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