apcluster: Affinity Propagation Clustering

The 'apcluster' package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are largely analogous to the 'Matlab' code published by Frey and Dueck. The package further provides leveraged affinity propagation and an algorithm for exemplar-based agglomerative clustering that can also be used to join clusters obtained from affinity propagation. Various plotting functions are available for analyzing clustering results.

Version: 1.4.2
Depends: R (≥ 3.0.0)
Imports: Rcpp (≥ 0.11.1), methods, Matrix, stats, graphics, grDevices
LinkingTo: Rcpp
Suggests: Biostrings, kebabs, knitr
Published: 2015-12-24
Author: Ulrich Bodenhofer, Johannes Palme, Chrats Melkonian, Andreas Kothmeier
Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.bioinf.jku.at/software/apcluster/
NeedsCompilation: yes
Citation: apcluster citation info
Materials: NEWS
In views: Cluster
CRAN checks: apcluster results

Downloads:

Reference manual: apcluster.pdf
Vignettes: An R Package for Affinity Propagation Clustering
Package source: apcluster_1.4.2.tar.gz
Windows binaries: r-devel: apcluster_1.4.2.zip, r-release: apcluster_1.4.2.zip, r-oldrel: apcluster_1.4.2.zip
OS X Snow Leopard binaries: r-release: apcluster_1.4.1.tgz, r-oldrel: apcluster_1.4.1.tgz
OS X Mavericks binaries: r-release: apcluster_1.4.2.tgz
Old sources: apcluster archive