apmsWAPP: Pre- and Postprocessing for AP-MS data analysis based on spectral counts

apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.

Version: 1.0
Depends: R (≥ 3.0.1)
Imports: genefilter, Biobase, seqinr, multtest, gtools, edgeR, DESeq, aroma.light
Published: 2014-04-22
Author: Martina Fischer
Maintainer: Martina Fischer <fischerm at rki.de>
License: LGPL-3
NeedsCompilation: no
SystemRequirements: SAINT_v2.3.4
CRAN checks: apmsWAPP results

Downloads:

Reference manual: apmsWAPP.pdf
Package source: apmsWAPP_1.0.tar.gz
Windows binaries: r-devel: apmsWAPP_1.0.zip, r-release: apmsWAPP_1.0.zip, r-oldrel: apmsWAPP_1.0.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: apmsWAPP_1.0.tgz

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