Copy-Number Analysis of Large Microarray Data Sets

Methods for analyzing DNA copy-number data. Specifically, this package implements the multi-source copy-number normalization (MSCN) method for normalizing copy-number data obtained on various platforms and technologies. It also implements the TumorBoost method for normalizing paired tumor-normal SNP data.

Version: 1.6.0
Depends: R (≥ 3.0.3), R.utils (≥ 1.34.0), aroma.core (≥ 2.13.0)
Imports: R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.18.0), R.filesets (≥ 2.7.0), R.cache (≥ 0.10.0), matrixStats (≥ 0.14.0), PSCBS (≥ 0.44.0)
Suggests: aroma.light (≥ 1.32.0), DNAcopy (≥ 1.36.0), GLAD (≥ 1.12.0)
Published: 2015-02-24
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut]
Maintainer: Henrik Bengtsson <henrikb at>
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
NeedsCompilation: no
Citation: citation info
Materials: NEWS
CRAN checks: results


Reference manual:
Package source: aroma.cn_1.6.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: not available, r-oldrel: aroma.cn_1.6.0.tgz
OS X Mavericks binaries: r-release: aroma.cn_1.6.0.tgz
Old sources: archive

Reverse dependencies:

Reverse suggests: MPAgenomics