Date | Package | Title |
---|---|---|

2014-10-30 | etasFLP | Mixed FLP and ML Estimation of ETAS Space-Time Point Processes |

2014-10-30 | fAssets | Rmetrics - Analysing and Modelling Financial Assets |

2014-10-30 | fPortfolio | Rmetrics - Portfolio Selection and Optimization |

2014-10-30 | MortalitySmooth | Smoothing and Forecasting Poisson Counts with P-Splines |

2014-10-30 | multicon | Multivariate Constructs |

2014-10-30 | pollstR | R client for the Huffpost Pollster API |

2014-10-30 | PrevMap | PrevMap - an R package for prevalence mapping |

2014-10-30 | RcppArmadillo | Rcpp Integration for the Armadillo Templated Linear Algebra Library |

2014-10-30 | sn | The skew-normal and skew-t distributions |

2014-10-30 | surveillance | Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena |

2014-10-30 | webutils | Utility Functions for Web Applications |

2014-10-29 | addreg | Additive Regression for Discrete Data |

2014-10-29 | alm | R Client for the Lagotto Altmetrics API Platform |

2014-10-29 | DAMOCLES | Dynamic Assembly Model Of Colonization, Local Extinction and Speciation |

2014-10-29 | deSolve | General Solvers for Initial Value Problems of Ordinary Differential Equations (ODE), Partial Differential Equations (PDE), Differential Algebraic Equations (DAE), and Delay Differential Equations (DDE) |

2014-10-29 | exCon | Interactive Exploration of Contour Data |

2014-10-29 | fBasics | Rmetrics - Markets and Basic Statistics |

2014-10-29 | HTSDiff | Differential Analysis of RNA-Seq Data with Poisson Mixture Models |

2014-10-29 | isdals | Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences |

2014-10-29 | ldr | Methods for likelihood-based dimension reduction in regression |

2014-10-29 | mlr | Machine Learning in R |

2014-10-29 | nullabor | Tools for Graphical Inference |

2014-10-29 | pander | An R Pandoc Writer |

2014-10-29 | peacots | Periodogram Peaks in Correlated Time Series |

2014-10-29 | qtl | Tools for analyzing QTL experiments |

2014-10-29 | R6 | Classes with reference semantics |

2014-10-29 | RefManageR | Straightforward BibTeX and BibLaTeX Bibliography Management |

2014-10-29 | rqPen | R Package for Penalized Quantile Regression |

2014-10-29 | Taxonstand | Taxonomic standardization of plant species names |

2014-10-28 | BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |

2014-10-28 | CateSelection | Categorical Variable Selection Methods |

2014-10-28 | Ecfun | Functions for Ecdat |

2014-10-28 | energy | E-statistics (energy statistics) |

2014-10-28 | FAOSTAT | A complementary package to the FAOSTAT database and the Statistical Yearbook of the Food and Agricultural Organization of the United Nations |

2014-10-28 | hht | The Hilbert-Huang Transform: Tools and Methods |

2014-10-28 | knitcitations | Citations for knitr markdown files |

2014-10-28 | lassoscore | High-Dimensional Inference with the Penalized Score Test |

2014-10-28 | logconPH | CoxPH Model with Log Concave Baseline Distribution |

2014-10-28 | MfUSampler | Multivariate-from-Univariate (MfU) MCMC Sampler |

2014-10-28 | qmethod | Analysis of Subjective Perspectives Using Q Methodology |

2014-10-28 | rgl | 3D visualization device system (OpenGL) |

2014-10-28 | robustreg | Robust Regression Functions |

2014-10-28 | safi | Sensitivity Analysis for Functional Input |

2014-10-28 | seqMeta | Meta-Analysis of Region-Based Tests of Rare DNA Variants |

2014-10-28 | settings | Software Option Settings Manager for R |

2014-10-28 | timeSeries | Rmetrics - Financial Time Series Objects |

2014-10-28 | TR8 | A tool for downloading functional traits data for plant species |

2014-10-28 | TSclust | Time series clustering utilities |

2014-10-27 | astsa | Applied Statistical Time Series Analysis |

2014-10-27 | bdscale | Remove Weekends and Holidays From ggplot2 Axes |

2014-10-27 | bio3d | Biological Structure Analysis |

2014-10-27 | choroplethr | Simplify the creation of choropleth maps in R |

2014-10-27 | DALY | DALY Calculator - A GUI for stochastic DALY calculation in R |

2014-10-27 | fICA | Classical, Reloaded and Adaptive FastICA Algorithms |

2014-10-27 | h2o | H2O R Interface |

2014-10-27 | pitchRx | Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x |

2014-10-27 | PopGenReport | PopGenReport: A simple way to analyse and visualize population genetic data |

2014-10-27 | qdm | Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments |

2014-10-27 | rangeMapper | A platform for the study of macroecology of life history traits |

2014-10-27 | RGA | A Google Analytics API client for R |

2014-10-27 | rjags | Bayesian graphical models using MCMC |

2014-10-27 | ropensecretsapi | R Package for the OpenSecrets.org API |

2014-10-27 | RQDA | R-based Qualitative Data Analysis |

2014-10-27 | sirt | Supplementary Item Response Theory Models |

2014-10-27 | sqldf | Perform SQL Selects on R Data Frames |

2014-10-27 | timeDate | Rmetrics - Chronological and Calendar Objects |

2014-10-26 | rdrobust | Robust data-driven statistical inference in Regression-Discontinuity designs |

2014-10-26 | RODBC | ODBC Database Access |

2014-10-26 | RSelenium | R bindings for Selenium WebDriver |

2014-10-26 | statar | Tools Inspired by Stata to Clean, Explore and Join Datasets |

2014-10-25 | BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |

2014-10-25 | BiSEp | Toolkit To Identify Candidate Synthetic Lethality |

2014-10-25 | choroplethrMaps | Contains maps used by the choroplethr package |

2014-10-25 | DBKGrad | Discrete Beta Kernel Graduation of Mortality Data |

2014-10-25 | FSelector | Selecting attributes |

2014-10-25 | HiDimDA | High Dimensional Discriminant Analysis |

2014-10-25 | highD2pop | Two-Sample Tests for Equality of Means in High Dimension |

2014-10-25 | ivpack | Instrumental Variable Estimation |

2014-10-25 | MAINT.Data | Model and Analyse Interval Data |

2014-10-25 | managelocalrepo | Manage a CRAN-style Local Repository |

2014-10-25 | rasterVis | Visualization methods for the raster package |

2014-10-25 | replicationInterval | Replication Interval Functions |

2014-10-25 | RSQLite | SQLite Interface for R |

2014-10-25 | simTool | Conduct Simulation Studies with a Minimal Amount of Source Code |

2014-10-25 | sparr | The sparr package: SPAtial Relative Risk |

2014-10-25 | spBayesSurv | Bayesian Modeling and Analysis of Spatially Correlated Survival Data |

2014-10-25 | Surrogate | Evaluation of surrogate endpoints in clinical trials |

2014-10-25 | TwoStepCLogit | Conditional logistic regression: A two-step estimation method |

2014-10-25 | vecsets | like base::sets tools but keeps duplicate elements |

2014-10-25 | VIM | Visualization and Imputation of Missing Values |

2014-10-24 | matrixpls | Matrix-based Partial Least Squares estimation |

2014-10-24 | P2C2M | Posterior Predictive Checks of Coalescent Models |

2014-10-24 | PANICr | PANIC Tests of Nonstationarity |

2014-10-24 | PHENIX | Phenotypic Integration Index |

2014-10-24 | polyCub | Cubature over Polygonal Domains |

2014-10-24 | ruv | Detect and Remove Unwanted Variation using Negative Controls |

2014-10-24 | spatstat | Spatial Point Pattern analysis, model-fitting, simulation, tests |

2014-10-24 | spocc | R Interface to Many Species Occurrence Data Sources |

2014-10-24 | WRS2 | Wilcox Robust Estimation and Testing |

2014-10-23 | CAMAN | Finite Mixture Models and meta-analysis tools - based on C.A.MAN |

2014-10-23 | highr | Syntax highlighting for R |

2014-10-23 | httpuv | HTTP and WebSocket server library |

2014-10-23 | IsingFit | Fitting Ising models using the eLasso method |

2014-10-23 | JADE | JADE and other BSS methods as well as some BSS performance criteria |

2014-10-23 | leafletR | Interactive Web-Maps Based on the Leaflet JavaScript Library |

2014-10-23 | matR | Metagenomics Analysis Tools for R |

2014-10-23 | MRH | Multi-Resolution Estimation of the Hazard Rate |

2014-10-23 | rsml | Root System Markup Language (RSML) file processing |

2014-10-23 | rtkpp | STK++ Integration To R Using Rcpp |

2014-10-23 | sgof | Multiple hypothesis testing |

2014-10-23 | sld | Estimation and Use of the Quantile-Based Skew Logistic Distribution |

2014-10-23 | splitstackshape | Stack and Reshape Datasets After Splitting Concatenated Values |

2014-10-22 | AutoSEARCH | General-to-Specific (GETS) Model Selection |

2014-10-22 | BAT | Biodiversity Assessment Tools |

2014-10-22 | BayesFactor | Computation of Bayes factors for common designs |

2014-10-22 | confidence | Confidence Estimation of Environmental State Classifications |

2014-10-22 | FDGcopulas | Multivariate Dependence with FDG Copulas |

2014-10-22 | FLSSS | Fixed Size Subset Sum Solution |

2014-10-22 | glmvsd | Variable Selection Deviation (VSD) Measures and Instability Tests for High-dimensional Generalized Linear Models |

2014-10-22 | gramEvol | Grammatical Evolution For R |

2014-10-22 | indicoio | A simple R Wrapper for the indico set of APIs - http://indico.io |

2014-10-22 | JMdesign | Joint Modeling of Longitudinal and Survival Data - Power Calculation |

2014-10-22 | lmenssp | Linear Mixed Effects Models with Non-stationary Stochastic Processes |

2014-10-22 | MixGHD | Model based clustering, classification and discriminant analysis using the mixture of generalized hyperbolic distributions |

2014-10-22 | ore | An R Interface to the Oniguruma Regular Expression Library |

2014-10-22 | ParetoPosStable | Computing, fitting and validating the PPS distribution |

2014-10-22 | pcaPP | Robust PCA by Projection Pursuit |

2014-10-22 | RAM | R for Amplicon-based Metagenomics |

2014-10-22 | rpf | Response Probability Functions |

2014-10-22 | saeSim | Simulation Tools for Small Area Estimation |

2014-10-22 | scrm | Simulating the Evolution of Biological Sequences |

2014-10-22 | sigloc | Signal Location Estimation |

2014-10-22 | speedglm | Fitting Linear and Generalized Linear Models to large data sets |

2014-10-22 | stepp | Subpopulation Treatment Effect Pattern Plot (STEPP) |

2014-10-22 | synbreed | Framework for the analysis of genomic prediction data using R |

2014-10-22 | TDboost | A Boosted Nonparametric Tweedie Model |

2014-10-22 | timeordered | Time-ordered and time-aggregated network analyses |

2014-10-22 | traj | Trajectory Analysis |

2014-10-21 | cdcsis | Conditional Distance Correlation and Its Related Feature Screening Method |

2014-10-21 | DetMCD | DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |

2014-10-21 | EnvStats | Package for Environmental Statistics, including US EPA Guidance |

2014-10-21 | equate | Observed-Score Linking and Equating |

2014-10-21 | extracat | Categorical Data Analysis and Visualization |

2014-10-21 | GGIR | Raw Accelerometer Data Analysis |

2014-10-21 | jackknifeKME | Jackknife Estimates of Kaplan-Meier Estimators or Integrals |

2014-10-21 | jsonlite | A Robust, High Performance JSON Parser and Generator for R |

2014-10-21 | MESS | Miscellaneous Esoteric Statistical Scripts |

2014-10-21 | MPTinR | Analyze Multinomial Processing Tree Models |

2014-10-21 | nhlscrapr | Compiling the NHL Real Time Scoring System Database for easy use in R |

2014-10-21 | npsp | Nonparametric spatial (geo)statistics |

2014-10-21 | openssl | Bindings to OpenSSL |

2014-10-21 | PKfit | Data Analysis Tool for Pharmacokinetics |

2014-10-21 | prevalence | The prevalence package |

2014-10-21 | RcppParallel | Parallel programming tools for Rcpp |

2014-10-21 | redcapAPI | R interface to REDCap |

2014-10-21 | rex | Simpler Regular Expressions |

2014-10-21 | RnavGraph | Using Graphs as a Navigational Infrastructure |

2014-10-21 | rplexos | Read and Analyze PLEXOS Solutions from R |

2014-10-21 | SamplingStrata | Optimal stratification of sampling frames for multipurpose sampling surveys |

2014-10-21 | STARSEQ | Secondary Trait Association analysis for Rare variants via SEQuence data |

2014-10-21 | tclust | Robust Trimmed Clustering |

2014-10-20 | commentr | Print Nicely Formatted Comments for use in Script Files |

2014-10-20 | geonames | Interface to www.geonames.org web service |

2014-10-20 | icapca | Mixed ICA/PCA |

2014-10-20 | imputeYn | Imputing the Last Largest Censored Observation(s) under Weighted Least Squares |

2014-10-20 | MDSGUI | A GUI for interactive MDS in R |

2014-10-20 | multiwayvcov | Multi-way Standard Error Clustering |

2014-10-20 | npmlreg | Nonparametric maximum likelihood estimation for random effect models |

2014-10-20 | restlos | Robust Estimation of Location and Scatter |

2014-10-20 | Rook | Rook - a web server interface for R |

2014-10-20 | ShrinkCovMat | Shrinkage Covariance Matrix Estimators |

2014-10-19 | AdapEnetClass | A Class of Adaptive Elastic-net Methods for Censored Data |

2014-10-19 | checkmate | Fast and versatile argument checks |

2014-10-19 | DEoptimR | Differential Evolution Optimization in pure R |

2014-10-19 | flare | Family of Lasso Regression |

2014-10-19 | meteoForecast | Numerical Weather Predictions |

2014-10-19 | multispatialCCM | Multispatial Convergent Cross Mapping |

2014-10-19 | picasso | Pathwise Calibrated Sparse Shooting Algorithm |

2014-10-19 | stylo | Functions for a Variety of Stylometric Analyses |

2014-10-19 | TAM | Test Analysis Modules |

2014-10-19 | tis | Time Indexes and Time Indexed Series |

2014-10-18 | landpred | Landmark Prediction of a Survival Outcome |

2014-10-18 | openxlsx | Read, Write and Edit XLSX Files |

2014-10-18 | rareNMtests | Ecological and biogeographical null model tests for comparing rarefaction curves |

2014-10-18 | raster | raster: Geographic data analysis and modeling |

2014-10-18 | stochprofML | Stochastic Profiling using Maximum Likelihood Estimation |

2014-10-17 | AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |

2014-10-17 | BcDiag | Diagnostics plots for Bicluster Data |

2014-10-17 | CINOEDV | Co-Information based N-Order Epistasis Detector and Visualizer |

2014-10-17 | CLME | Constrained Inference for Linear Mixed Effects Models |

2014-10-17 | ecoval | Procedures for Ecological Assessment of Surface Waters |

2014-10-17 | enigma | R Client for the Enigma API |

2014-10-17 | ExtDist | Extended Probability Distribution Functions |

2014-10-17 | fat2Lpoly | Two-locus Family-based Association Test with Polytomous Outcome |

2014-10-17 | gsg | Calculation of selection coefficients |

2014-10-17 | highTtest | Simultaneous Critical Values for t-Tests in Very High Dimensions |

2014-10-17 | kselection | Selection of k in k-means clustering |

2014-10-17 | laGP | Local Approximate Gaussian Process Regression |

2014-10-17 | likert | Functions to analyze and visualize likert type items |

2014-10-17 | mdscore | Improved Score Tests for Generalized Linear Models |

2014-10-17 | pBrackets | Plot Brackets |

2014-10-17 | PtProcess | Time Dependent Point Process Modelling |

2014-10-17 | R2GUESS | Wrapper functions for GUESS |

2014-10-17 | R.devices | Unified handling of graphics devices |

2014-10-17 | RMKdiscrete | Sundry Discrete Probability Distributions |

2014-10-17 | segmag | Determine Event Boundaries in Event Segmentation Experiments |

2014-10-17 | SemiParBIVProbit | Semiparametric Bivariate Probit Modelling |

2014-10-17 | sisVIVE | Some Invalid Some Valid Instrumental Variables Estimator |

2014-10-16 | frailtypack | General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction |

2014-10-16 | logbin | Relative Risk Regression Using the Log Binomial Model |

2014-10-16 | metaMix | Bayesian Mixture Analysis for Metagenomic Community Profiling |

2014-10-16 | Metatron | Meta-analysis for Classification Data and Correction to Imperfect Reference |

2014-10-16 | NbClust | NbClust package for determining the best number of clusters |

2014-10-16 | NPCirc | Nonparametric Circular Methods |

2014-10-16 | pdc | Permutation Distribution Clustering |

2014-10-16 | Peptides | Calculate indices and theoretical physicochemical properties of peptides and protein sequences |

2014-10-16 | PubMedWordcloud | PubMed Word Clouds |

2014-10-16 | RcmdrPlugin.steepness | Steepness Rcmdr Plug-in |

2014-10-16 | RCMIP5 | Tools for Manipulating and Summarizing CMIP5 Data |

2014-10-16 | rfoaas | R Interface to FOAAS |

2014-10-16 | rivernet | Read, Analyze and Plot River Networks |

2014-10-16 | Rrdrand | Generate Physical Random Numbers on Intel CPUs with the RdRand instruction |

2014-10-16 | seedy | Simulation of Evolutionary and Epidemiological Dynamics |

2014-10-16 | SMR | Externally Studentized Midrange Distribution |

2014-10-16 | StMoSim | Plots a QQ-Norm Plot with several Gaussian simulations |

2014-10-16 | stochvol | Efficient Bayesian Inference for Stochastic Volatility (SV) Models |

2014-10-16 | transport | Optimal transport in various forms |

2014-10-16 | windex | windex: Analysing convergent evolution using the Wheatsheaf index |

2014-10-15 | AlgDesign | Algorithmic Experimental Design |

2014-10-15 | berryFunctions | Function Collection related to Hydrology, Zooming and Plotting |

2014-10-15 | clustvarsel | Variable Selection for Model-Based Clustering |

2014-10-15 | crayon | Colored Terminal Output |

2014-10-15 | cwhmisc | Miscellaneous Functions for math, plotting, printing, statistics, strings, and tools |

2014-10-15 | evtree | Evolutionary Learning of Globally Optimal Trees |

2014-10-15 | GA | Genetic Algorithms |

2014-10-15 | gets | General-to-Specific (GETS) Model Selection |

2014-10-15 | ggRandomForests | Creating and Plotting Data Objects for Understanding Random Forests |

2014-10-15 | matrixStats | Methods that apply to rows and columns of a matrix |

2014-10-15 | mirtCAT | Computerized Adaptive Testing with Multidimensional Item Response Theory |

2014-10-15 | MVN | Multivariate Normality Tests |

2014-10-15 | nsgp | Non-Stationary Gaussian Process Regression |

2014-10-15 | rbison | R interface to the USGS BISON API |

2014-10-15 | spark | Sparklines in the R Terminal |

2014-10-15 | SpecsVerification | Forecast verification routines for the SPECS FP7 project |

2014-10-15 | spgrass6 | Interface between GRASS 6+ geographical information system and R |

2014-10-15 | strvalidator | Process Control And Internal Validation Of Forensic STR Kits |

2014-10-15 | TDA | Statistical Tools for Topological Data Analysis |

2014-10-15 | utility | Construct, Evaluate and Plot Value and Utility Functions |

2014-10-15 | vetools | Tools for Venezuelan Environmental Data |

2014-10-14 | dice | Calculate probabilities of various dice-rolling events |

2014-10-14 | epinet | A Collection of Epidemic/Network-Related Tools |

2014-10-14 | FADA | Variable selection for supervised classification in high dimension |

2014-10-14 | InterVA4 | Replicate and analyse InterVA4 |

2014-10-14 | mclogit | Mixed Conditional Logit |

2014-10-14 | metaplus | Robust meta-analysis and meta-regression |

2014-10-14 | overlap | Estimates of coefficient of overlapping for animal activity patterns |

2014-10-14 | randomLCA | Random Effects Latent Class Analysis |

2014-10-14 | rPref | rPref |

2014-10-14 | SCGLR | Supervised Component Generalized Linear Regression (SCGLR) |

2014-10-14 | soilphysics | Soil Physical Analysis |

2014-10-14 | spgwr | Geographically weighted regression |

2014-10-13 | Anthropometry | Statistical Methods for Anthropometric Data |

2014-10-13 | ASMap | Linkage map construction using the MSTmap algorithm |

2014-10-13 | circlize | Circular Visualization in R |

2014-10-13 | CP | Conditional Power Calculations |

2014-10-13 | datamart | Unified access to your data sources |

2014-10-13 | dataRetrieval | Retrieval functions for hydrologic data |

2014-10-13 | eegkit | Toolkit for Electroencephalography Data |

2014-10-13 | flam | Fits Piecewise Constant Models with Data-Adaptive Knots |

2014-10-13 | knitr | A general-purpose package for dynamic report generation in R |

2014-10-13 | memisc | Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation |

2014-10-13 | msBP | Multiscale Bernstein Polynomials for Densities |

2014-10-13 | mwaved | Multichannel wavelet deconvolution with additive long memory noise |

2014-10-13 | popRange | popRange: A spatially and temporally explicit forward genetic simulator |

2014-10-13 | prettyunits | Pretty, Human Readable Formatting of Quantities |

2014-10-13 | QualInt | Test for Qualitative Interactions |

2014-10-13 | rcdk | rcdk - Interface to the CDK Libraries |

2014-10-13 | RImpala | R and Impala |

2014-10-13 | rNOMADS | An interface to the NOAA Operational Model Archive and Distribution System |

2014-10-13 | sptm | SemiParametric Transformation Model Methods |

2014-10-12 | afex | Analysis of Factorial Experiments |

2014-10-12 | Bergm | Bayesian analysis for exponential random graph models |

2014-10-12 | BIFIEsurvey | Some Tools for Survey Statistics in Educational Assessment, Developed by BIFIE |

2014-10-12 | BSGW | Bayesian Survival Model using Generalized Weibull Regression |

2014-10-12 | ConvergenceConcepts | Seeing convergence concepts in action |

2014-10-12 | googleVis | Interface between R and Google Charts |

2014-10-12 | mkin | Routines for fitting kinetic models with one or more state variables to chemical degradation data |

2014-10-12 | pracma | Practical Numerical Math Functions |

2014-10-12 | RNetLogo | Provides an Interface to the Agent-Based Modelling Platform NetLogo |

2014-10-12 | VdgRsm | Variance Dispersion and Fraction of Design Space Plots |

2014-10-11 | dplyr | A Grammar of Data Manipulation |

2014-10-11 | GetoptLong | Parse command-line arguments and variable interpolation |

2014-10-11 | mfblock | Fitting and Simulation of a block multifactor model |

2014-10-11 | RAdwords | RAdwords: Loading Adwords data into R |

2014-10-11 | timetools | provides objects and tools to manipulate irregular heterogeneous time data and subtime data |

2014-10-11 | VAR.etp | VAR modelling: estimation, testing, and prediction |

2014-10-10 | adwave | Wavelet Analysis of Genomic Data from Admixed Populations |

2014-10-10 | Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |

2014-10-10 | BNSP | Bayesian Non- and Semi-parametric Model Fitting |

2014-10-10 | checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |

2014-10-10 | G2Sd | Grain-size Statistics and Description of Sediment |

2014-10-10 | HierO | A graphical user interface for calculating power and sample size for hierarchical data |

2014-10-10 | lfe | Linear Group Fixed Effects |

2014-10-10 | mirt | Multidimensional Item Response Theory |

2014-10-10 | MplusAutomation | Automating Mplus Model Estimation and Interpretation |

2014-10-10 | ParamHelpers | Helpers for parameters in black-box optimization, tuning and machine learning |

2014-10-10 | PivotalR | R front-end to PostgreSQL and Pivotal (Greenplum) database, wrapper for MADlib |

2014-10-10 | Power2Stage | Power and Sample size distribution of 2-stage BE studies via simulations |

2014-10-10 | protr | Generating Various Numerical Representation Schemes of Protein Sequence |

2014-10-10 | R.matlab | Read and write of MAT files together with R-to-MATLAB connectivity |

2014-10-10 | RPushbullet | R Interface to the Pushbullet Messaging Service |

2014-10-10 | RSQLServer | SQL Server R Database Interface (DBI) |

2014-10-09 | anominate | alpha-NOMINATE Ideal Point Estimator |

2014-10-09 | CEC | Cross-Entropy Clustering |

2014-10-09 | ENiRG | Ecological Niche in R and GRASS |

2014-10-09 | freqweights | Working with frequency tables |

2014-10-09 | minqa | Derivative-free optimization algorithms by quadratic approximation |

2014-10-09 | mpcv | Multivariate Process Capability Vector |

2014-10-09 | phangorn | Phylogenetic analysis in R |

2014-10-09 | Rcmdr | R Commander |

2014-10-08 | cclust | Convex Clustering Methods and Clustering Indexes |

2014-10-08 | geospt | Spatial geostatistics; some geostatistical and radial basis functions, prediction and cross validation; design of optimal spatial sampling networks based on geostatistical modelling |

2014-10-08 | HiDimMaxStable | Inference on High Dimensional Max-Stable Distributions |

2014-10-08 | moult | Models for analysing moult in birds |

2014-10-08 | pvclust | Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling |

2014-10-08 | quantmod | Quantitative Financial Modelling Framework |

2014-10-08 | Rdsm | Threads Environment for R |

2014-10-08 | R.utils | Various programming utilities |

2014-10-08 | saps | Significance Analysis of Prognostic Signatures |

2014-10-08 | seqDesign | Simulation and group sequential monitoring of randomized multi-arm two-stage Phase IIb/III treatment efficacy trials with time-to-event endpoints |

2014-10-08 | sequenza | Copy number estimation from tumor genome sequencing data |

2014-10-08 | subselect | Selecting variable subsets |

2014-10-07 | CINID | Curculionidae INstar IDentification |

2014-10-07 | devtools | Tools to make developing R code easier |

2014-10-07 | dpcR | Digital PCR Analysis |

2014-10-07 | GlobalOptions | Generate functions to get or set global options |

2014-10-07 | ibelief | An R Package for Implementing Belief Functions |

2014-10-07 | MareyMap | Estimation of meiotic recombination rates using marey maps |

2014-10-07 | mnormpow | Multivariate Normal Distributions with Power Integrand |

2014-10-07 | MTurkR | R Client for the MTurk Requester API |

2014-10-07 | nlme | Linear and Nonlinear Mixed Effects Models |

2014-10-07 | PerFit | Person Fit |

2014-10-07 | PLordprob | Multivariate Ordered Probit Model via Pairwise Likelihood |

2014-10-07 | PoweR | Computation of Power and Level Tables for Hypothesis Tests |

2014-10-07 | qcc | Quality Control Charts |

2014-10-07 | qicharts | Quality improvement charts |

2014-10-07 | sft | Functions for Systems Factorial Technology Analysis of Data |

2014-10-07 | ssym | Fitting Semi-parametric Symmetric Regression Models |

2014-10-07 | stringdist | Approximate string matching and string distance functions |

2014-10-07 | TEEReg | Trimmed Elemental Estimation for Linear Models |

2014-10-07 | TurtleGraphics | Turtle graphics in R |

2014-10-07 | VecStatGraphs3D | Vector analysis using graphical and analytical methods in 3D |

2014-10-07 | vegan3d | Static and dynamic 3D plots for vegan package |

2014-10-06 | COPASutils | Tools for processing COPAS large-particle flow cytometer data |

2014-10-06 | diseasemapping | Calculate observed and expected disease incidence counts from a case file and population data |

2014-10-06 | embryogrowth | Tools to Analyze the Thermal Reaction Norm of Embryo Growth |

2014-10-06 | fscaret | Automated caret feature selection |

2014-10-06 | GISTools | Some further GIS capabilities for R |

2014-10-06 | GMCM | Fast estimation of Gaussian Mixture Copula Models |

2014-10-06 | grofit | The package was developed to fit fit many growth curves obtained under different conditions |

2014-10-06 | lllcrc | Local Log-linear Models for Capture-Recapture |

2014-10-06 | MonetDB.R | Connect MonetDB to R |

2014-10-06 | mpt | Multinomial Processing Tree (MPT) Models |

2014-10-06 | mvprpb | Orthant Probability of the Multivariate Normal Distribution |

2014-10-06 | NB | Maximum Likelihood method in estimating effective population size from genetic data |

2014-10-06 | phenology | Tools to manage a parametric function that describes phenology |

2014-10-06 | pingr | Check If a Remote Computer is Up |

2014-10-06 | PowerTOST | Power and Sample size based on two one-sided t-tests (TOST) for (bio)equivalence studies |

2014-10-06 | ProjectTemplate | Automates the creation of new statistical analysis projects |

2014-10-06 | repra | Renewable Energy Probability Resource Assessment Tool (REPRA) |

2014-10-06 | RMark | R Code for MARK Analysis |

2014-10-06 | SemiMarkov | Multi-States Semi-Markov Models |

2014-10-06 | snipEM | Snipping methods for robust estimation and clustering |

2014-10-06 | vardpoor | Variance estimation for sample surveys by the ultimate cluster method |

2014-10-06 | VLMC | VLMC – Variable Length Markov Chains |

2014-10-06 | YourCast | Forecasting age-sex-country-cause mortality rates |

2014-10-06 | ZIM | Zero-Inflated Models for Count Time Series with Excess Zeros |

2014-10-05 | catIrt | An R Package for Simulating IRT-Based Computerized Adaptive Tests |

2014-10-05 | ENMeval | Automated runs and evaluations of ecological niche models |

2014-10-05 | ordinalgmifs | Ordinal Regression for High-dimensional Data |

2014-10-05 | pbdMPI | Programming with Big Data – Interface to MPI |

2014-10-05 | rainfreq | Rainfall Frequency (Design Storm) Estimates from the US National Weather Service |

2014-10-04 | BMA | Bayesian Model Averaging |

2014-10-04 | DynNom | A Dynamic Nomogram for Linear and Generalized Linear Models as Shiny Applications |

2014-10-04 | ggvis | Interactive grammar of graphics |

2014-10-04 | numOSL | Numeric routines for optically stimulated luminescence dating |

2014-10-04 | qdap | Bridging the Gap Between Qualitative Data and Quantitative Analysis |

2014-10-04 | qdapTools | Tools for the qdap package |

2014-10-04 | R2HTML | HTML exportation for R objects |

2014-10-04 | saccades | Detection of Fixations in Eye-Tracking Data |

2014-10-04 | SightabilityModel | Wildlife Sightability Modeling |

2014-10-04 | simPH | Tools for Simulating and Plotting Quantities of Interest Estimated From Cox Proportional Hazards Models |

2014-10-04 | stm | Estimation of the Structural Topic Model |

2014-10-04 | vec2dtransf | 2D Cartesian Coordinate Transformation |

2014-10-03 | bigsplines | Smoothing Splines for Large Samples |

2014-10-03 | blocksdesign | Nested Block Designs for Unstructured Treatments |

2014-10-03 | dawai | Discriminant analysis with additional information |

2014-10-03 | enpls | Ensemble Partial Least Squares (EnPLS) Regression |

2014-10-03 | gMCP | Graph Based Multiple Comparison Procedures |

2014-10-03 | HIBAG | HIBAG – HLA Genotype Imputation with Attribute Bagging |

2014-10-03 | MAPA | Multiple Aggregation Prediction Algorithm |

2014-10-03 | msda | Multi-class Sparse Discriminant Analysis |

2014-10-03 | RobPer | Robust periodogram methods for irregularly sampled time series and robust periodicity detection methods |

2014-10-03 | semTools | Useful tools for structural equation modeling |

2014-10-03 | simsem | SIMulated Structural Equation Modeling |

2014-10-03 | splancs | Spatial and Space-Time Point Pattern Analysis |

2014-10-03 | tsintermittent | Intermittent Time Series Forecasting |

2014-10-02 | carcass | Estimation of the number of fatalities from carcass searches |

2014-10-02 | ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |

2014-10-02 | copula | Multivariate Dependence with Copulas |

2014-10-02 | CorReg | Linear regression based on linear structure between covariates |

2014-10-02 | data.table | Extension of data.frame |

2014-10-02 | DDIwR | DDI with R |

2014-10-02 | fpc | Flexible procedures for clustering |

2014-10-02 | geostatsp | Geostatistics using SpatialPoints and rasters |

2014-10-02 | mboost | Model-Based Boosting |

2014-10-02 | mfp | Multivariable Fractional Polynomials |

2014-10-02 | mi | Missing Data Imputation and Model Checking |

2014-10-02 | multcomp | Simultaneous Inference in General Parametric Models |

2014-10-02 | mycor | Automatic Correlation and Regression Test in a Data Frame |

2014-10-02 | repfdr | Replicability Analysis for Multiple Studies of High Dimension |

2014-10-02 | rsm | Response-surface analysis |

2014-10-02 | seasonal | R interface to X-13ARIMA-SEATS |

2014-10-02 | shrink | Global, Parameterwise and Joint Post-Estimation Shrinkage |

2014-10-02 | spTimer | Spatio-Temporal Bayesian Modelling Using R |

2014-10-02 | stabs | Stability Selection with Error Control |

2014-10-02 | TED | Turbulence Time Series Event Detection and Classification |

2014-10-02 | WriteXLS | Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX) files |

2014-10-01 | cna | A Package for Coincidence Analysis (CNA) |

2014-10-01 | deducorrect | deducorrect: Deductive correction, deductive imputation, and deterministic correction |

2014-10-01 | distrom | Distributed Multinomial Regression |

2014-10-01 | eaf | Plots of the Empirical Attainment Function |

2014-10-01 | EpiModel | Mathematical Modeling of Infectious Disease |

2014-10-01 | exsic | Convenience Functions for Botanists to Create Specimens Indices |

2014-10-01 | FuzzyNumbers | Tools to deal with fuzzy numbers |

2014-10-01 | gamlr | Gamma Lasso Regression |

2014-10-01 | kyotil | Utility Functions by Youyi & Krisz |

2014-10-01 | lazyeval | Lazy (Non-Standard) Evaluation |

2014-10-01 | measuRing | Detection and Control of Tree-Ring Widths on Scanned Image Sections of Dendrochronological Samples |

2014-10-01 | miniCRAN | Tools to create an internally consistent, mini version of CRAN with selected packages only |

2014-10-01 | RandomFields | Simulation and Analysis of Random Fields |

2014-10-01 | shiny | Web Application Framework for R |

2014-10-01 | SQDA | Sparse Quadratic Discriminant Analysis |

2014-10-01 | steepness | Testing Steepness of Dominance Hierarchies |

2014-10-01 | testthat | Testthat code. Tools to make testing fun :) |

2014-10-01 | TFDEA | TFDEA (Technology Forecasting using DEA) |

2014-09-30 | boot | Bootstrap Functions (originally by Angelo Canty for S) |

2014-09-30 | gvcm.cat | Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth effects in GLMs |

2014-09-30 | lavaan | Latent Variable Analysis |

2014-09-30 | MASS | Support Functions and Datasets for Venables and Ripley's MASS |

2014-09-30 | mco | Multiple Criteria Optimization Algorithms and Related Functions |

2014-09-30 | mdsdt | Functions for Analysis of Data with General Recognition Theory |

2014-09-30 | NPBayesImpute | Non-parametric Bayesian Multiple Imputation for Categorical Data |

2014-09-30 | pipeR | Pipe operator and function |

2014-09-30 | protViz | Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics |

2014-09-30 | rbamtools | An R package for reading and writing BAM (Binary alignment) files |

2014-09-30 | rcicr | Reverse correlation image classification toolbox |

2014-09-30 | RHive | R and Hive |

2014-09-29 | activity | Animal Activity Statistics |

2014-09-29 | aLFQ | An R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data |

2014-09-29 | atmcmc | Automatically Tuned Markov Chain Monte Carlo |

2014-09-29 | chipPCR | Toolkit of helper functions to pre-process amplification data |

2014-09-29 | corpcor | Efficient Estimation of Covariance and (Partial) Correlation |

2014-09-29 | dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |

2014-09-29 | DoE.base | Full factorials, orthogonal arrays and base utilities for DoE packages |

2014-09-29 | DoE.wrapper | Wrapper package for design of experiments functionality |

2014-09-29 | EffectStars | Visualization of Categorical Response Models |

2014-09-29 | FeedbackTS | Analysis of Feedback in Time Series |

2014-09-29 | fSRM | Social Relations Analyses with roles ("Family SRM") |

2014-09-29 | gapmap | Functions for Drawing Gapped Cluster Heatmap with ggplot2 |

2014-09-29 | gender | Gender: predict gender from names using historical data |

2014-09-29 | ggdendro | Tools for extracting dendrogram and tree diagram plot data for use with ggplot2 |

2014-09-29 | GPFDA | Apply Gaussian Process in Functional data analysis |

2014-09-29 | hierfstat | Estimation and tests of hierarchical F-statistics |

2014-09-29 | httpRequest | Basic HTTP Request |

2014-09-29 | log4r | A simple logging system for R, based on log4j |

2014-09-29 | LSAfun | Applied Latent Semantic Analysis (LSA) functions |

2014-09-29 | magicaxis | Pretty scientific plotting with minor-tick and log minor-tick support |

2014-09-29 | nleqslv | Solve systems of non linear equations |

2014-09-29 | RcmdrPlugin.EZR | R Commander Plug-in for the EZR (Easy R) Package |

2014-09-29 | Rcpp | Seamless R and C++ Integration |

2014-09-29 | rFDSN | Get Seismic Data from the International Federation of Digital Seismograph Networks |

2014-09-29 | rjstat | Read and write JSON-stat data sets |

2014-09-29 | robustDA | Robust Mixture Discriminant Analysis |

2014-09-29 | ScottKnott | The ScottKnott Clustering Algorithm |

2014-09-29 | signal.hsmm | Predict Presence of Signal Peptides |

2014-09-29 | soiltexture | Functions for soil texture plot, classification and transformation |

2014-09-29 | sprint | Simple Parallel R INTerface |

2014-09-29 | yuima | The YUIMA Project package for SDEs |

2014-09-28 | DoseFinding | Planning and Analyzing Dose Finding experiments |

2014-09-28 | ecoretriever | R Interface to the EcoData Retriever |

2014-09-28 | expands | ExPANdS |

2014-09-28 | HotDeckImputation | Hot Deck Imputation Methods for Missing Data |

2014-09-28 | LARF | Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects |

2014-09-28 | lm.beta | Add Standardized Regression Coefficients to lm-Objects |

2014-09-28 | mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |

2014-09-28 | meboot | Maximum Entropy Bootstrap for Time Series |

2014-09-28 | microbenchmark | Accurate Timing Functions |

2014-09-28 | neural | Neural Networks |

2014-09-28 | pdfetch | Fetch economic and financial time series data from public sources |

2014-09-28 | readMzXmlData | Reads Mass Spectrometry Data in mzXML Format |

2014-09-28 | sweidnumbr | Handling of Swedish Identity Numbers |

2014-09-27 | BrailleR | Improved access for blind useRs |

2014-09-27 | eHOF | Extended and enhanced Hierarchical Logistic Regression models (so called Huisman-Olff-Fresco models) |

2014-09-27 | FastPCS | R package to compute the FastPCS outlyingness index |

2014-09-27 | FastRCS | R package to compute the FastRCS outlyingness index |

2014-09-27 | hglm | Hierarchical Generalized Linear Models |

2014-09-27 | MetFns | Analysis of Visual Meteor Data |

2014-09-27 | mrds | Mark-Recapture Distance Sampling (mrds) |

2014-09-27 | oro.pet | Rigorous - Positron Emission Tomography |

2014-09-27 | propagate | Propagation of Uncertainty |

2014-09-27 | readBrukerFlexData | Reads mass spectrometry data in Bruker *flex format |

2014-09-27 | RVAideMemoire | Diverse basic statistical and graphical functions |

2014-09-27 | trustOptim | Trust region nonlinear optimization, efficient for sparse Hessians |

2014-09-26 | ADDT | A Package for Analysis of Accelerated Destructive Degradation Test Data |

2014-09-26 | alr4 | Data to accompany Applied Linear Regression 4rd edition |

2014-09-26 | aplpack | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions |

2014-09-26 | cape | Combined analysis of pleiotropy and epistasis |

2014-09-26 | copBasic | Basic Theoretical Copula, Empirical Copula, and Various Utility Functions |

2014-09-26 | GENLIB | Genealogical Data Analysis |

2014-09-26 | GenWin | Spline Based Window Boundaries for Genomic Analyses |

2014-09-26 | glcm | Calculate textures from grey-level co-occurrence matrices (GLCMs) in R |

2014-09-26 | Guerry | Maps, data and methods related to Guerry (1833) "Moral Statistics of France" |

2014-09-26 | iC10 | A copy number and expression-based classifier for breast tumours |

2014-09-26 | iC10TrainingData | Training datasets for iC10 package |

2014-09-26 | jSonarR | jSonar Analytics Platform API for R |

2014-09-26 | lmSupport | Support for Linear Models |

2014-09-26 | MAT | Multidimensional Adaptive Testing |

2014-09-26 | mime | Map filenames to MIME types |

2014-09-26 | oc | OC Roll Call Analysis Software |

2014-09-26 | snpEnrichment | SNPs enrichment analysis |

2014-09-25 | agrmt | Calculate agreement |

2014-09-25 | betareg | Beta Regression |

2014-09-25 | causaleffect | Deriving Expressions of Joint Interventional Distributions in Causal Models |

2014-09-25 | Crossover | Crossover Designs |

2014-09-25 | dcGOR | Analysis of ontologies and protein domain annotations |

2014-09-25 | exactci | Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases |

2014-09-25 | glarma | Generalized Linear Autoregressive Moving Average Models |

2014-09-25 | GSE | Robust Estimation of Multivariate Location and Scatter in the Presence of Missing Data |

2014-09-25 | HiddenMarkov | Hidden Markov Models |

2014-09-25 | indicspecies | Studying the statistical relationship between species and groups of sites |

2014-09-25 | ivprobit | Instrumental variables probit model |

2014-09-25 | Morpho | Calculations and visualisations related to Geometric Morphometrics |

2014-09-25 | qqman | Q-Q and manhattan plots for GWAS data |

2014-09-25 | SPREDA | Statistical Package for Reliability Data Analysis |

2014-09-25 | virtualspecies | Generation of Virtual Species Distributions |

2014-09-24 | BatchExperiments | Statistical experiments on batch computing clusters |

2014-09-24 | BatchJobs | Batch computing with R |

2014-09-24 | BDgraph | Graph estimation based on birth-death MCMC approach |

2014-09-24 | birdring | Methods to analyse ring re-encounter data |

2014-09-24 | Compind | Composite indicators functions |

2014-09-24 | DBI | R Database Interface |

2014-09-24 | Delaporte | Statistical functions for the Delaporte distribution |

2014-09-24 | deming | Deming, Thiel-Sen and Passing-Bablock Regression |

2014-09-24 | flexmix | Flexible Mixture Modeling |

2014-09-24 | forecast | Forecasting functions for time series and linear models |

2014-09-24 | hddtools | Hydrological Data Discovery Tools |

2014-09-24 | kofnGA | A genetic algorithm for fixed-size subset selection |

2014-09-24 | mmand | Mathematical morphology in any number of dimensions |

2014-09-24 | NHMM | Bayesian NHMM modeling (multiple time series) |

2014-09-24 | parsedate | Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formats |

2014-09-24 | qdapRegex | Regular Expression Removal, Extraction, and Replacement Tools |

2014-09-24 | rentrez | Entrez in R |

2014-09-24 | RSurvey | Analysis of Spatially Distributed Data |

2014-09-24 | scam | Shape constrained additive models |

2014-09-24 | shinyFiles | A server-side file system viewer for shiny |

2014-09-24 | SimplicialCubature | Numerical integration of functions over simplices |

2014-09-24 | VennDiagram | Generate high-resolution Venn and Euler plots |

2014-09-23 | ClickClust | Model-Based Clustering of Categorical Sequences |

2014-09-23 | datacheck | Tools for checking data consistency |

2014-09-23 | ivivc | A data analysis tool for in vitro-in vivo correlation (IVIVC) |

2014-09-23 | lessR | Less Code, More Results |

2014-09-23 | lsmeans | Least-Squares Means |

2014-09-23 | mpath | Regularized Linear Models |

2014-09-23 | pvsR | An R package to interact with the Project Vote Smart API for scientific research |

2014-09-23 | RJSDMX | R interface to SDMX Web Services |

2014-09-23 | Rvcg | Manipulations of triangular meshes (smoothing, quadric edge collapse decimation, im- and export of various mesh file-formats, cleaning, etc.) based on the VCGLIB API |

2014-09-23 | SemiPar | Semiparametic Regression |

2014-09-23 | TreePar | Estimating birth and death rates based on phylogenies |

2014-09-23 | trip | Spatial analysis of animal track data |

2014-09-23 | wnominate | WNOMINATE Roll Call Analysis Software |

2014-09-22 | dendextend | Extending R's dendrogram functionality |

2014-09-22 | DescTools | Tools for descriptive statistics |

2014-09-22 | dnet | Integrative analysis of omics data in terms of network, evolution and ontology |

2014-09-22 | documair | Automatic Documentation for R packages |

2014-09-22 | flexsurv | Flexible parametric survival and multi-state models |

2014-09-22 | IBrokers | R API to Interactive Brokers Trader Workstation |

2014-09-22 | maps | Draw Geographical Maps |

2014-09-22 | mpmi | Mixed-pair mutual information estimators |

2014-09-22 | polysat | Tools for Polyploid Microsatellite Analysis |

2014-09-22 | predictmeans | Calculate Predicted Means for Linear Models |

2014-09-22 | proxy | Distance and Similarity Measures |

2014-09-22 | recosystem | Recommender System using Matrix Factorization |

2014-09-22 | secr | Spatially explicit capture-recapture |

2014-09-22 | sglasso | Lasso method for RCON(V,E) models |

2014-09-21 | archivist | Tools for storing, restoring and searching for R objects |

2014-09-21 | CGP | Composite Gaussian process models |

2014-09-21 | RcmdrPlugin.MA | Graphical User Interface for Conducting Meta-Analyses in R |

2014-09-21 | rgeos | Interface to Geometry Engine - Open Source (GEOS) |

2014-09-21 | rmngb | rmngb Miscellaneous |

2014-09-21 | samplesize4surveys | Sample size calculations for complex surveys |

2014-09-21 | sendmailR | send email using R |

2014-09-21 | trotter | Pseudo-Vectors Containing All Permutations, Combinations and Subsets of Objects Taken from a Vector |

2014-09-20 | audited | Automatic Tracing and Display of Changes to Row Count |

2014-09-20 | Density.T.HoldOut | Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation |

2014-09-20 | llama | Leveraging Learning to Automatically Manage Algorithms |

2014-09-20 | mitools | Tools for multiple imputation of missing data |

2014-09-20 | mp | Multidimensional Projection Techniques |

2014-09-20 | MST | Multivariate Survival Trees |

2014-09-20 | OrdLogReg | Ordinal Logic Regression |

2014-09-20 | randomizationInference | Flexible Randomization-Based Inference |

2014-09-20 | RcppOctave | Seamless Interface to Octave – and Matlab |

2014-09-20 | REDCapR | Interaction between R and REDCap |

2014-09-20 | RRreg | Correlation and Regression Analyses of Randomized Response Designs |

2014-09-20 | shapes | Statistical shape analysis |

2014-09-20 | vdmR | Visual Data Mining Tools for R |

2014-09-19 | allelematch | Identifying unique multilocus genotypes where genotyping error and missing data may be present |

2014-09-19 | beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |

2014-09-19 | BEANSP | Bayesian Estimate of Age-specific Nest Survival Probabilities |

2014-09-19 | BOIN | Bayesian Optimal Interval Design for Phase I Clinical Trials |

2014-09-19 | bReeze | Functions for wind resource assessment |

2014-09-19 | comclim | Community climate statistics |

2014-09-19 | edgeRun | More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data |

2014-09-19 | gdsfmt | R Interface to CoreArray Genomic Data Structure (GDS) files |

2014-09-19 | gmailr | Access the Gmail RESTful API from R |

2014-09-19 | iki.dataclim | Consistency, Homogeneity and Summary Statistics of Climatological Data |

2014-09-19 | intervals | Tools for working with points and intervals |

2014-09-19 | LogicForest | Logic Forest |

2014-09-19 | multipleNCC | Weighted Cox-regression for nested case-control data |

2014-09-19 | nat.nblast | NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron Similarity and Clustering |

2014-09-19 | nlWaldTest | Wald Test of nonlinear restrictions for regression parameters |

2014-09-19 | opentraj | Tools for Creating and Analysing Air Trajectory Data |

2014-09-19 | randomUniformForest | Random Uniform Forests for Classification and Regression |

2014-09-19 | RcmdrPlugin.NMBU | R Commander Plug-In for Statistics at NMBU |

2014-09-19 | Rhpc | An R package for High-Performance Computing |

2014-09-19 | RidgeFusion | R Package for Ridge Fusion in Statistical Learning |

2014-09-19 | RMOA | Connect R with MOA for Massive Online Analysis |

2014-09-19 | rms | Regression Modeling Strategies |

2014-09-19 | RUnit | R Unit test framework |

2014-09-19 | sdmvspecies | Create virtual species for species distribution modelling |

2014-09-19 | SmoothHazard | Fitting illness-death model for interval-censored data |

2014-09-19 | spatialnbda | Performs spatial NBDA in a Bayesian context |

2014-09-19 | spdep | Spatial dependence: weighting schemes, statistics and models |

2014-09-19 | spMC | Continuous Lag Spatial Markov Chains |

2014-09-18 | adaptDA | Adaptive Mixture Discriminant Analysis |

2014-09-18 | aRxiv | Interface to the arXiv API |

2014-09-18 | bbo | Biogeography-Based Optimization |

2014-09-18 | betategarch | Simulation, estimation and forecasting of Beta-Skew-t-EGARCH models |

2014-09-18 | boral | Bayesian Ordination and Regression AnaLysis |

2014-09-18 | clhs | Conditioned Latin Hypercube Sampling |

2014-09-18 | corHMM | Analysis of binary character evolution |

2014-09-18 | DirichletReg | Dirichlet Regression in R |

2014-09-18 | gfcanalysis | Tools for working with Hansen et al. 2013 Global Forest Change dataset |

2014-09-18 | gplots | Various R programming tools for plotting data |

2014-09-18 | ivbma | Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors |

2014-09-18 | mapmisc | Utilities for producing maps |

2014-09-18 | modTempEff | Modelling temperature effects using time series data |

2014-09-18 | paleotree | Paleontological and Phylogenetic Analyses of Evolution |

2014-09-18 | powerr | Analysis of Power System |

2014-09-18 | refGenome | Gene And Splice Site Annotation Using Annotation Data From Ensembl And UCSC Genome Browsers |

2014-09-18 | repmis | A collection of miscellaneous tools for reproducible research with R |

2014-09-18 | rgdal | Bindings for the Geospatial Data Abstraction Library |

2014-09-18 | Rtsne | T-distributed Stochastic Neighbor Embedding using Barnes-Hut implementation |

2014-09-18 | TreeSim | Simulating trees under the birth-death model |

2014-09-18 | uskewFactors | Model-based clustering via mixtures of unrestricted skew-t factor analyzer models |

2014-09-17 | coin | Conditional Inference Procedures in a Permutation Test Framework |

2014-09-17 | EntropyEstimation | Estimation of Entropy and Related Quantities |

2014-09-17 | fCopulae | Rmetrics - Bivariate Dependence Structures with Copulae |

2014-09-17 | gamlss | Generalised Additive Models for Location Scale and Shape |

2014-09-17 | gamlss.dist | Distributions to be used for GAMLSS modelling |

2014-09-17 | party | A Laboratory for Recursive Partytioning |

2014-09-17 | qgtools | Tools for Quantitative Genetics Data Analyses |

2014-09-17 | RadioSonde | Tools for plotting skew-T diagrams and wind profiles |

2014-09-17 | rmarkdown | Dynamic Documents for R |

2014-09-17 | RMOAjars | External jars required for package RMOA |

2014-09-17 | simsalapar | Tools for Simulation Studies in Parallel with R |

2014-09-16 | compute.es | Compute Effect Sizes |

2014-09-16 | Distance | A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations |

2014-09-16 | dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |

2014-09-16 | dsm | Density surface modelling of distance sampling data |

2014-09-16 | fRegression | Rmetrics - Regression Based Decision and Prediction |

2014-09-16 | GuardianR | The Guardian API Wrapper |

2014-09-16 | hypergea | Hypergeometric tests |

2014-09-16 | LiblineaR | Linear Predictive Models Based On The liblinear C/C++ Library |

2014-09-16 | m4fe | Models for Financial Economics |

2014-09-16 | MatchingFrontier | Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference |

2014-09-16 | mclust | Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation |

2014-09-16 | mixlm | Mixed model ANOVA and statistics for education |

2014-09-16 | nat.templatebrains | NeuroAnatomy Toolbox (nat) Extension for Handling Template Brains |

2014-09-16 | ncdf4 | Interface to Unidata netCDF (version 4 or earlier) format data files |

2014-09-16 | nontarget | Detecting, Combining and Filtering Isotope, Adduct and Homologue Series Relations in High-Resolution Mass Spectrometry (HRMS) Data |

2014-09-16 | PerformanceAnalytics | Econometric tools for performance and risk analysis |

2014-09-16 | polidata | Political Data Interface in R |

2014-09-16 | qat | Quality Assurance Toolkit |

2014-09-16 | smoother | Smoother |

2014-09-16 | SSDforR | SSD for R to analyze single system data |

2014-09-16 | tab | Functions for Creating Summary Tables for Statistical Reports |

2014-09-16 | UPMASK | Unsupervised Photometric Membership Assignment in Stellar Clusters |

2014-09-15 | binequality | Methods for Analyzing Binned Income Data |

2014-09-15 | demography | Forecasting mortality, fertility, migration and population data |

2014-09-15 | fmsb | Functions for medical statistics book with some demographic data |

2014-09-15 | genlasso | Path algorithm for generalized lasso problems |

2014-09-15 | hot.deck | Multiple Hot-deck Imputation |

2014-09-15 | investr | Inverse Estimation/Calibration Functions |

2014-09-15 | MissingDataGUI | A GUI for Missing Data Exploration |

2014-09-15 | netweavers | NetWeAvers: Weighted Averages for Networks |

2014-09-15 | nonnest2 | Tests of non-nested models |

2014-09-15 | PerMallows | Permutations and Mallows distributions |

2014-09-15 | propOverlap | Feature (gene) selection based on the Proportional Overlapping Scores |

2014-09-15 | qpcR | Modelling and analysis of real-time PCR data |

2014-09-15 | rredis | Redis client for R |

2014-09-15 | Ryacas | R interface to the yacas computer algebra system |

2014-09-15 | SOR | Estimation using Sequential Offsetted Regression |

2014-09-14 | agop | Aggregation Operators and Preordered Sets |

2014-09-14 | DLMtool | Data-Limited Methods Toolkit |

2014-09-14 | EDISON | Network Reconstruction and Changepoint Detection |

2014-09-14 | geoR | Analysis of geostatistical data |

2014-09-14 | KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |

2014-09-14 | multigroup | methods for multigroup data analysis |

2014-09-14 | RcmdrPlugin.coin | Rcmdr Coin Plug-In |

2014-09-14 | RH2 | DBI/RJDBC interface to h2 Database |

2014-09-14 | RPMM | Recursively Partitioned Mixture Model |

2014-09-13 | geepack | Generalized Estimating Equation Package |

2014-09-13 | HH | Statistical Analysis and Data Display: Heiberger and Holland |

2014-09-13 | iBATCGH | Integrative Bayesian Analysis of Transcriptomic and CGH data |

2014-09-13 | Lahman | Sean Lahman's Baseball Database |

2014-09-13 | ONETr | Efficient authenticated interaction with the O*NET API |

2014-09-13 | phyloland | Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework |

2014-09-13 | referenceIntervals | Reference Intervals |

2014-09-12 | Hmisc | Harrell Miscellaneous |

2014-09-12 | meta | Meta-Analysis with R |

2014-09-12 | Mobilize | Mobilize plots and functions |

2014-09-12 | nettools | A Network Comparison Framework |

2014-09-12 | partykit | A Toolkit for Recursive Partytioning |

2014-09-12 | PepPrep | Insilico peptide mutation, digestion and homologous comparison |

2014-09-12 | PReMiuM | Dirichlet Process Bayesian Clustering, Profile Regression |

2014-09-12 | RGraphics | Data and Functions from the book R Graphics, Second Edition |

2014-09-12 | RhpcBLASctl | Control the number of threads on BLAS for R |

2014-09-12 | seewave | Sound analysis and synthesis |

2014-09-12 | SimComp | Simultaneous Comparisons for Multiple Endpoints |

2014-09-12 | spatsurv | Bayesian spatial survival analysis with parametric proportional hazards models |

2014-09-12 | treatSens | Sensitivity analysis for causal inference |

2014-09-12 | unittest | TAP-compliant unit testing |

2014-09-12 | WhopGenome | High-speed processing of whole-genome VCF-format variation data, FASTA-format sequence data and several alignments formats |

2014-09-12 | xtable | Export tables to LaTeX or HTML |

2014-09-12 | zCompositions | Imputation of Zeros and Nondetects in Compositional Data Sets |

2014-09-11 | DatABEL | file-based access to large matrices stored on HDD in binary format |

2014-09-11 | FRESA.CAD | FeatuRE Selection Algorithms for Computer Aided Diagnosis |

2014-09-11 | funFEM | Clustering in the Discriminative Functional Subspace |

2014-09-11 | glmmLasso | Variable selection for generalized linear mixed models by L1-penalized estimation |

2014-09-11 | intsvy | International Assessment Data Manager |

2014-09-11 | knnIndep | Independence tests and benchmarks |

2014-09-11 | lcmm | Estimation of Extended Mixed Models Using Latent Classes and Latent Processes |

2014-09-11 | lefse | Phylogenetic and Functional Analyses for Ecology |

2014-09-11 | lmms | Linear mixed effect model splines for modelling and analysis of time course data |

2014-09-11 | OjaNP | Multivariate Methods Based on the Oja Median and Related Concepts |

2014-09-11 | pbkrtest | Parametric bootstrap and Kenward Roger based methods for mixed model comparison |

2014-09-11 | pkgKitten | Create Simple Packages Which Do Not Upset R CMD check |

2014-09-11 | RankResponse | Ranking Responses in a Single Response Question or a Multiple Response Question |

2014-09-11 | rChoiceDialogs | rChoiceDialogs collection |

2014-09-11 | rsubgroup | Subgroup Discovery and Analytics |

2014-09-10 | caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |

2014-09-10 | catR | Procedures to generate IRT adaptive tests (CAT) |

2014-09-10 | cgam | Constrained Generalized Additive Model |

2014-09-10 | cmvnorm | Complex multivariate Gaussian distribution |

2014-09-10 | dismo | Species distribution modeling |

2014-09-10 | dunn.test | Dunn's test of multiple comparisons using rank sums |

2014-09-10 | eegkitdata | Data for package eegkit |

2014-09-10 | ForwardSearch | Forward Search using asymptotic theory |

2014-09-10 | GGMselect | Gaussian Graphs Models selection |

2014-09-10 | hwriter | HTML Writer - Outputs R objects in HTML format |

2014-09-10 | isotone | Active set and generalized PAVA for isotone optimization |

2014-09-10 | mmcm | Modified Maximum Contrast Method |

2014-09-10 | mnlogit | Multinomial Logit Model |

2014-09-10 | Ohmage | R Client for Ohmage 2 server |

2014-09-10 | paleobioDB | paleobioDB: a package for downloading, visualizing and processing data from Paleobiology Database |

2014-09-10 | RcmdrPlugin.IPSUR | An IPSUR Plugin for the R Commander |

2014-09-10 | RDML | Importing real-time thermo cycler (qPCR) data from RDML format files |

2014-09-10 | saery | Small Area Estimation for Rao and Yu Model |

2014-09-10 | segmented | Segmented relationships in regression models with breakpoints/changepoints estimation |

2014-09-10 | Sim.DiffProc | Simulation of Diffusion Processes |

2014-09-10 | sjPlot | sjPlot - data visualization for statistics in social science |

2014-09-10 | spaMM | Mixed Models, Particularly Spatial GLMMs |

2014-09-10 | vcrpart | Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models |

2014-09-09 | BGPhazard | Markov beta and gamma processes for modeling hazard rates |

2014-09-09 | bpkde | Back-Projected Kernel Density Estimation |

2014-09-09 | CircE | Circumplex models Estimation |

2014-09-09 | couchDB | Connect and work with couchDB databases |

2014-09-09 | doBy | doBy - Groupwise summary statistics, LSmeans, general linear contrasts, various utilities |

2014-09-09 | domino | Domino Data Lab R console bindings |

2014-09-09 | fcros | FCROS for detecting differentially expressed genes |

2014-09-09 | geosphere | Spherical Trigonometry |

2014-09-09 | globalOptTests | Objective functions for benchmarking the performance of global optimization algorithms |

2014-09-09 | micropan | Microbial Pan-genome Analysis |

2014-09-09 | ngspatial | Fitting the centered autologistic and sparse spatial generalized linear mixed models for areal data |

2014-09-09 | spam | SPArse Matrix |

2014-09-09 | taxize | Taxonomic information from around the web |

2014-09-09 | TripleR | Social Relation Model (SRM) analyses for single or multiple round-robin groups |

2014-09-08 | accrued | Visualization tools for partially accruing data |

2014-09-08 | anacor | Simple and Canonical Correspondence Analysis |

2014-09-08 | astro | Astronomy Functions, Tools and Routines |

2014-09-08 | easyanova | Analysis of variance and other important complementary analyzes |

2014-09-08 | emulator | Bayesian emulation of computer programs |

2014-09-08 | funHDDC | Model-based clustering in group-specific functional subspaces |

2014-09-08 | HDPenReg | High-Dimensional Penalized Regression |

2014-09-08 | hiddenf | Conduct the F test for hidden additivity in two-factor experiments |

2014-09-08 | htmltools | Tools for HTML |

2014-09-08 | ibd | INCOMPLETE BLOCK DESIGNS |

2014-09-08 | LinRegInteractive | Interactive Interpretation of Linear Regression Models |

2014-09-08 | lunar | Lunar Phase & Distance, Seasons and Other Environmental Factors |

2014-09-08 | minque | An R Package for Linear Mixed Model Analyses |

2014-09-08 | MODISTools | MODIS Subsetting Tools |

2014-09-08 | operators | Additional binary operators for the R language |

2014-09-08 | RcmdrPlugin.EBM | Rcmdr Evidence Based Medicine Plug-In package |

2014-09-08 | slackr | Send messages, images, R objects and files to Slack.com channels/users |

2014-09-08 | SNFtool | Similarity Network Fusion |

2014-09-08 | tlm | Effects under Linear, Logistic and Poisson Regression Models with Transformed Variables |

2014-09-07 | bionetdata | Biological and chemical data networks |

2014-09-07 | copCAR | Fitting the copCAR regression model for discrete areal data |

2014-09-07 | evmix | Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation |

2014-09-07 | extraTrees | Extremely Randomized Trees (ExtraTrees) method for classification and regression |

2014-09-07 | GUILDS | Implementation of sampling formulas for the unified neutral model of biodiversity and biogeography, with or without guild structure |

2014-09-07 | JAGUAR | Joint Analysis of Genotype and Group-specific Variability Using a Novel Score Test Approach to Map eQTL |

2014-09-07 | OpenRepGrid | Tools to analyse repertory grid data |

2014-09-07 | PerfMeas | PerfMeas: Performance Measures for ranking and classification tasks |

2014-09-07 | rattle | Graphical user interface for data mining in R |

2014-09-07 | Rsomoclu | R package for somoclu |

2014-09-07 | rucm | Implementation of Unobserved Components Model (UCM) in R |

2014-09-07 | xgboost | eXtreme Gradient Boosting |

2014-09-06 | asbio | A collection of statistical tools for biologists |

2014-09-06 | eggCounts | Hierarchical modelling of faecal egg counts |

2014-09-06 | fMultivar | Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions |

2014-09-06 | GDAtools | A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis |

2014-09-06 | logcondens | Estimate a Log-Concave Probability Density from iid Observations |

2014-09-06 | OrdFacReg | Least Squares, Logistic, and Cox-Regression with Ordered Predictors |

2014-09-06 | pyramid | Functions to draw population pyramid |

2014-09-06 | RcmdrPlugin.temis | Graphical Integrated Text Mining Solution |

2014-09-06 | selectMeta | Estimation of Weight Functions in Meta Analysis |

2014-09-05 | bartMachine | Bayesian Additive Regression Trees |

2014-09-05 | caseMatch | Identify similar cases for qualitative case studies |

2014-09-05 | classyfire | Robust multivariate classification using highly optimised SVM ensembles |

2014-09-05 | GxM | Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models |

2014-09-05 | pec | Prediction Error Curves for Survival Models |

2014-09-05 | powerGWASinteraction | Power Calculations for GxE and GxG Interactions for GWAS |

2014-09-05 | preseqR | Predicting Species Accumulation |

2014-09-05 | readbitmap | Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG) |

2014-09-05 | REBayes | Empirical Bayes Estimation and Inference in R |

2014-09-05 | rebmix | The Rebmix Package |

2014-09-05 | REPPlab | R interface to EPP-lab, a Java program for exploratory projection pursuit |

2014-09-05 | Rmpfr | R MPFR - Multiple Precision Floating-Point Reliable |

2014-09-05 | structSSI | Multiple Testing for Hypotheses with Hierarchical or Group Structure |

2014-09-04 | BCA | Business and Customer Analytics |

2014-09-04 | cluster | Cluster Analysis Extended Rousseeuw et al |

2014-09-04 | ClustVarLV | Clustering of variables around Latent Variables |

2014-09-04 | cooptrees | Cooperative aspects of optimal trees in weighted graphs |

2014-09-04 | CopulaRegression | Bivariate Copula Based Regression Models |

2014-09-04 | Cprob | Conditional probability function of a competing event |

2014-09-04 | Ecdat | Data sets for econometrics |

2014-09-04 | haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |

2014-09-04 | helloJavaWorld | Hello Java World |

2014-09-04 | idr | Irreproducible discovery rate |

2014-09-04 | insuranceData | A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance |

2014-09-04 | kmi | Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting |

2014-09-04 | MCDA | MCDA |

2014-09-04 | miscset | Miscellaneous Tools Set |

2014-09-04 | MRCV | Methods for Analyzing Multiple Response Categorical Variables (MRCVs) |

2014-09-04 | parcor | Regularized estimation of partial correlation matrices |

2014-09-04 | plsdof | Degrees of Freedom and Statistical Inference for Partial Least Squares Regression |

2014-09-04 | PP | Person Parameter estimation |

2014-09-04 | ppls | Penalized Partial Least Squares |

2014-09-04 | pqantimalarials | web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa |

2014-09-04 | pxweb | R interface to the PX-Web/PC-Axis API |

2014-09-04 | RcmdrMisc | R Commander Miscellaneous Functions |

2014-09-04 | RcmdrPlugin.BCA | Rcmdr Plug-In for Business and Customer Analytics |

2014-09-04 | sanon | Stratified Analysis with Nonparametric covariable adjustment |

2014-09-04 | SDaA | Sampling: Design and Analysis |

2014-09-04 | sparseSEM | Sparse-aware Maximum Likelihood for Structural Equation Models |

2014-09-04 | subrank | Computes copula using ranks and subsampling |

2014-09-03 | coreTDT | TDT for compound heterozygous and recessive models |

2014-09-03 | DNAtools | Tools for analysing forensic genetic DNA data |

2014-09-03 | docopt | docopt, command-line interface specification language |

2014-09-03 | GPfit | Gaussian Processes Modeling |

2014-09-03 | jaatha | A Fast Parameter Estimation Method for Evolutionary Biology |

2014-09-03 | logitchoice | Fitting l2-regularized logit choice models via generalized gradient descent |

2014-09-03 | mixAK | Multivariate normal mixture models and mixtures of generalized linear mixed models including model based clustering |

2014-09-03 | MPV | Data Sets from Montgomery, Peck and Vining's Book |

2014-09-03 | MSIseq | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations |

2014-09-03 | nabor | Wraps libnabo, a fast K Nearest Neighbour library for low dimensions |

2014-09-03 | NCmisc | Miscellaneous general purpose functions |

2014-09-03 | packrat | A dependency management system for projects and their R package dependencies |

2014-09-03 | tolerance | Functions for calculating tolerance intervals |

2014-09-03 | upclass | Updated Classification Methods using Unlabeled Data |

2014-09-03 | UsingR | Data sets, etc. for the text "Using R for Introductory Statistics", second edition |

2014-09-03 | wgaim | Whole Genome Average Interval Mapping for QTL detection using mixed models |

2014-09-02 | ds | Descriptive Statistics |

2014-09-02 | easingr | Fetch and plot credit easing policy tool data |

2014-09-02 | enviPick | Peak picking for high resolution mass spectrometry data |

2014-09-02 | exactmeta | Exact fixed effect meta analysis |

2014-09-02 | Frames2 | Estimation in dual frame surveys |

2014-09-02 | HiClimR | Hierarchical Climate Regionalization: An Improved Hierarchical Clustering in R for Climate Regionalization |

2014-09-02 | httr | Tools for working with URLs and HTTP |

2014-09-02 | ica | Independent Component Analysis |

2014-09-02 | mht | Multiple Hypotheses Testing For Variable Selection |

2014-09-02 | nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |

2014-09-02 | optrees | Optimal Trees in Weighted Graphs |

2014-09-02 | prodlim | Product-limit estimation. Kaplan-Meier and Aalen-Johansson method for censored event history (survival) analysis |

2014-09-02 | rappdirs | Application directories: determine where to save data, caches and logs |

2014-09-02 | rcbalance | Large, sparse optimal matching with refined covariate balance |

2014-09-02 | roxygen2 | In-source documentation for R |

2014-09-02 | rpg | Easy interface to advanced PostgreSQL features |

2014-09-02 | SCRT | Single-Case Randomization Tests |

2014-09-02 | SCVA | Single-Case Visual Analysis |

2014-09-02 | sgr | Sample Generation by Replacement |

2014-09-02 | StereoMorph | Stereo Camera Calibration and Reconstruction |

2014-09-01 | agricolae | Statistical Procedures for Agricultural Research |

2014-09-01 | chebpol | Multivariate Chebyshev interpolation |

2014-09-01 | descomponer | Seasonal adjustment by frequency analysis |

2014-09-01 | e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |

2014-09-01 | geoBayes | Analysis of geostatistical data using Bayes and empirical Bayes methods |

2014-09-01 | heavy | Package for robust estimation using heavy-tailed distributions |

2014-09-01 | lgarch | Simulation and estimation of log-GARCH models |

2014-09-01 | mixOmics | Omics Data Integration Project |

2014-09-01 | OpasnetUtils | Utility functions for dealing with data in Opasnet (www.opasnet.org) environment |

2014-09-01 | pdR | panel data regression |

2014-09-01 | RankAggreg | Weighted rank aggregation |

2014-09-01 | Rbitcoin | R & bitcoin integration |

2014-09-01 | RCEIM | RCEIM - R Cross Entropy Inspired Method for Optimization |

2014-09-01 | reader | A suite of functions to flexibly read data from files |

2014-09-01 | rsdmx | Tools for reading SDMX data and metadata |

2014-09-01 | StAMPP | Statistical Analysis of Mixed Ploidy Populations |

2014-09-01 | Tampo | Tools for the Analysis of Microchemical Profiles from Otoliths |

2014-09-01 | traitr | An interface for creating GUIs modeled in part after traits UI module for python |

2014-09-01 | wordnet | WordNet Interface |

2014-08-31 | CDM | Cognitive Diagnosis Modeling |

2014-08-31 | chemosensors | A tool for the design of synthetic experiments in machine olfaction |

2014-08-31 | chords | Estimation in respondent driven samples |

2014-08-31 | lbfgs | Limited-memory BFGS Optimization |

2014-08-31 | ngramr | Retrieve and plot Google n-gram data |

2014-08-31 | pmg | Poor Man's GUI |

2014-08-31 | rcdklibs | rcdklib - CDK libraries packaged for R |

2014-08-31 | RNetCDF | R Interface to NetCDF Datasets |

2014-08-30 | apc | Age-period-cohort analysis |

2014-08-30 | jvmr | Integration of R, Java, and Scala |

2014-08-30 | mcIRT | IRT models for multiple choice items (mcIRT) |

2014-08-30 | nsRFA | Non-supervised Regional Frequency Analysis |

2014-08-30 | PopGenome | An Efficient Swiss Army Knife for Population Genomic Analyses |

2014-08-30 | RSiteCatalyst | R Client for Adobe Analytics API v1.4 |

2014-08-30 | survivalMPL | Penalised Maximum Likelihood for Survival Analysis Models |

2014-08-30 | TDMR | Tuned Data Mining in R |

2014-08-29 | analogue | Analogue and weighted averaging methods for palaeoecology |

2014-08-29 | BH | Boost C++ header files |

2014-08-29 | BIOM.utils | Utilities for the BIOM (Biological Observation Matrix) Format |

2014-08-29 | birk | MA Birk functions |

2014-08-29 | compendiumdb | Tools for Storage and Retrieval of Gene Expession Data |

2014-08-29 | corrgram | Plot a correlogram |

2014-08-29 | decompr | Export Decomposition (Wang-Wei-Zhu and source) |

2014-08-29 | Eplot | Plotting longitudinal series |

2014-08-29 | FreeSortR | Free Sorting data analysis |

2014-08-29 | heatmap3 | A improved heatmap package |

2014-08-29 | icamix | Estimation of ICA Mixture Models |

2014-08-29 | iosmooth | Functions for smoothing with infinite order flat-top kernels |

2014-08-29 | lakemorpho | Lake morphometry in R |

2014-08-29 | mgcv | Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation |

2014-08-29 | MGSDA | Multi-Group Sparse Discriminant Analysis |

2014-08-29 | mme | Multinomial Mixed Effects Models |

2014-08-29 | psychotools | Infrastructure for Psychometric Modeling |

2014-08-29 | psychotree | Recursive Partitioning Based on Psychometric Models |

2014-08-29 | raincpc | Obtain and Analyze Rainfall Data from the Climate Prediction Center |

2014-08-29 | Rcapture | Loglinear Models for Capture-Recapture Experiments |

2014-08-29 | RcmdrPlugin.FactoMineR | Graphical User Interface for FactoMineR |

2014-08-29 | riverplot | Sankey or ribbon plots |

2014-08-29 | sns | Stochastic Newton Sampler (SNS) |

2014-08-29 | SQUAREM | Squared extrapolation methods for accelerating fixed-point iterations |

2014-08-29 | ttScreening | Genome-wide DNA methylation sites screening by use of training and testing samples |

2014-08-29 | turboEM | A Suite of Convergence Acceleration Schemes for EM, MM and other fixed-point algorithms |

2014-08-29 | vows | Voxelwise semiparametrics |

2014-08-28 | bfast | Breaks For Additive Season and Trend (BFAST) |

2014-08-28 | BioStatR | Initiation à la Statistique avec R |

2014-08-28 | bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |

2014-08-28 | cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |

2014-08-28 | cheddar | Analysis and visualisation of ecological communities |

2014-08-28 | compareGroups | Descriptive analysis by groups |

2014-08-28 | effsize | Efficient effect size computation |

2014-08-28 | FactoMineR | Multivariate Exploratory Data Analysis and Data Mining with R |

2014-08-28 | fastR | Data sets and utilities for Foundations and Applications of Statistics by R Pruim |

2014-08-28 | georob | Robust Geostatistical Analysis of Spatial Data |

2014-08-28 | gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |

2014-08-28 | ifultools | Insightful Research Tools |

2014-08-28 | LatticeKrig | Multiresolution Kriging based on Markov random fields |

2014-08-28 | QuantifQuantile | Estimation of conditional quantiles using optimal quantization |

2014-08-28 | rAvis | Interface to the bird-watching datasets at proyectoavis.com |

2014-08-28 | RcmdrPlugin.DoE | R Commander Plugin for (industrial) Design of Experiments |

2014-08-28 | Rlabkey | Data exchange between R and LabKey Server |

2014-08-28 | Runuran | R interface to the UNU.RAN random variate generators |

2014-08-28 | trajectories | Classes and methods for trajectory data |

2014-08-27 | arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |

2014-08-27 | blkergm | Fitting block ERGM given the block structure on social networks |

2014-08-27 | dotenv | Load environment variables from .env |

2014-08-27 | falsy | Define truthy and falsy values |

2014-08-27 | fwsim | Fisher-Wright Population Simulation |

2014-08-27 | GMD | Generalized Minimum Distance of distributions |

2014-08-27 | GoFKernel | GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator |

2014-08-27 | gsubfn | Utilities for strings and function arguments |

2014-08-27 | lmeVarComp | Testing for a subset of variance components in linear mixed models |

2014-08-27 | mediation | Causal Mediation Analysis |

2014-08-27 | MultiSV | MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing |

2014-08-27 | pamr | Pam: prediction analysis for microarrays |

2014-08-27 | pscl | Political Science Computational Laboratory, Stanford University |

2014-08-27 | ptinpoly | Point-In-Polyhedron Test (2D and 3D) |

2014-08-27 | R.filesets | Easy handling of and access to files organized in structured directories |

2014-08-27 | SelvarMix | Regularization for variable selection in model-based clustering and discriminant analysis |

2014-08-27 | SemiParSampleSel | Semiparametric Sample Selection Modelling with Continuous Response |

2014-08-27 | shopifyr | An R Interface to the Shopify API |

2014-08-27 | statebins | statebins is an alternative to choropleth maps for USA States |

2014-08-26 | BoolNet | Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks |

2014-08-26 | BTSPAS | Bayesian Time-Strat. Population Analysis |

2014-08-26 | cents | Censored time series |

2014-08-26 | DepthProc | DepthProc |

2014-08-26 | ecoengine | Programmatic interface to the API serving UC Berkeley's Natural History Data |

2014-08-26 | emplik | Empirical likelihood ratio for censored/truncated data |

2014-08-26 | extRemes | Extreme Value Analysis |

2014-08-26 | GGally | Extension to ggplot2 |

2014-08-26 | gmatrix | An R Package for Harnessing GPU Power |

2014-08-26 | HistogramTools | Utility Functions for R Histograms |

2014-08-26 | HTSCluster | Clustering high throughput sequencing (HTS) data |

2014-08-26 | KANT | Package to identify and sort genes overexpressed |

2014-08-26 | ks | Kernel smoothing |

2014-08-26 | MBmca | Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R |

2014-08-26 | minerva | minerva: Maximal Information-Based Nonparametric Exploration R package for Variable Analysis |

2014-08-26 | phytools | Phylogenetic Tools for comparative biology (and other things) |

2014-08-26 | pubmed.mineR | Text mining of PubMed Abstracts |

2014-08-26 | randomForestSRC | Random Forests for Survival, Regression and Classification (RF-SRC) |

2014-08-26 | sensitivity | Sensitivity Analysis |

2014-08-26 | spcadjust | Functions for calibrating control charts |

2014-08-26 | Sunder | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |

2014-08-26 | swirl | Learn R, in R |

2014-08-26 | testthatsomemore | A mocking, stubbing, and file testing framework extending testthat |

2014-08-26 | tsDyn | Nonlinear time series models with regime switching |

2014-08-26 | visreg | Visualization of regression models |

2014-08-25 | commandr | Command pattern in R |

2014-08-25 | CommonJavaJars | Useful libraries for building a Java based GUI under R |

2014-08-25 | exact2x2 | Exact Conditional Tests and Confidence Intervals for 2x2 tables |

2014-08-25 | formatR | Format R Code Automatically |

2014-08-25 | granova | Graphical Analysis of Variance |

2014-08-25 | hapassoc | Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm |

2014-08-25 | MultNonParam | Multivariate Nonparametric Methods |

2014-08-25 | mutossGUI | A graphical user interface for the MuToss Project |

2014-08-25 | nanop | Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function |

2014-08-25 | ncdf | Interface to Unidata netCDF data files |

2014-08-25 | nopp | Nash Optimal Party Positions |

2014-08-25 | Rd2roxygen | Convert Rd to roxygen documentation and utilities to improve documentation |

2014-08-25 | remote | Empirical Orthogonal Teleconnections in R |

2014-08-25 | sde | Simulation and Inference for Stochastic Differential Equations |

2014-08-25 | shotGroups | Analyze shot group data |

2014-08-24 | caret | Classification and Regression Training |

2014-08-24 | CosmoPhotoz | Photometric redshift estimation using generalized linear models |

2014-08-24 | EMP | Expected Maximum Profit for Credit Scoring |

2014-08-24 | HLSM | Hierarchical latent space network model (HLSM) |

2014-08-24 | hypervolume | High-dimensional kernel density estimation and geometry operations |

2014-08-24 | markdown | Markdown rendering for R |

2014-08-24 | mkde | 2D and 3D movement-based kernel density estimates (MKDEs) |

2014-08-24 | rARPACK | R wrapper of ARPACK for large scale eigenvalue/vector problems, on both dense and sparse matrices |

2014-08-24 | RsimMosaic | R Simple IMage Mosaic creation library |

2014-08-24 | sandwich | Robust Covariance Matrix Estimators |

2014-08-24 | schoRsch | Tools for analyzing factorial experiments |

2014-08-24 | sonicLength | Estimating Abundance of Clones from DNA fragmentation data |

2014-08-23 | AMOEBA | A Multidirectional Optimum Ecotope-Based Algorithm |

2014-08-23 | bigRR | Generalized Ridge Regression (with special advantage for p >> n cases) |

2014-08-23 | ChainLadder | Statistical methods and models for the calculation of outstanding claims reserves in general insurance |

2014-08-23 | CompRandFld | Composite-likelihood based Analysis of Random Fields |

2014-08-23 | gamclass | Functions and data for a course on modern regression and classification |

2014-08-23 | gsDesign | Group Sequential Design |

2014-08-23 | labeling | Axis Labeling |

2014-08-23 | mosaic | Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities |

2014-08-23 | mosaicData | Project MOSAIC (mosaic-web.org) data sets |

2014-08-23 | mppa | Statistics for analysing multiple simultaneous point processes on the real line |

2014-08-23 | NHANES | NHANES data |

2014-08-23 | NLP | Natural Language Processing Infrastructure |

2014-08-23 | pauwels2014 | Bayesian Experimental Design for Systems Biology |

2014-08-23 | season | Seasonal analysis of health data |

2014-08-23 | spacetime | classes and methods for spatio-temporal data |

2014-08-23 | survAccuracyMeasures | Estimate accuracy measures for risk prediction markers from survival data |

2014-08-22 | bdsmatrix | Routines for Block Diagonal Symmetric matrices |

2014-08-22 | PResiduals | Probability scale residuals and residual correlations |

2014-08-22 | qualityTools | Statistical Methods for Quality Science |

2014-08-22 | rlist | A set of tools for working with list objects |

2014-08-22 | scaRabee | Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models |

2014-08-22 | scholar | Analyse citation data from Google Scholar |

2014-08-22 | spdynmod | Spatio-dynamic wetland plant communities model |

2014-08-22 | tuple | Find every match, or orphan, duplicate, triplicate, or other replicated values |

2014-08-22 | visova | Visualization of Analysis of Variance(VISOVA) |

2014-08-22 | wpp2012 | World Population Prospects 2012 |

2014-08-22 | wppExplorer | Explorer of World Population Prospects |

2014-08-22 | xlsxjars | Package required POI jars for the xlsx package |

2014-08-21 | boilerpipeR | Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/) |

2014-08-21 | childsds | Calculation of standard deviation scores adduced from different growth standards |

2014-08-21 | codetools | Code Analysis Tools for R |

2014-08-21 | EpiDynamics | Dynamic Models in Epidemiology |

2014-08-21 | mvnfast | Fast multivariate normal methods |

2014-08-21 | nat | nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data |

2014-08-21 | pegas | Population and Evolutionary Genetics Analysis System |

2014-08-21 | RcppEigen | Rcpp integration for the Eigen templated linear algebra library |

2014-08-21 | sensory | Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization (PEM) algorithm |

2014-08-21 | SocialNetworks | Generates social networks based on distance |

2014-08-21 | SparseTSCGM | Sparse time series chain graphical models |

2014-08-21 | TableToLongForm | TableToLongForm |

2014-08-20 | bold | Interface to Bold Systems API |

2014-08-20 | CCTpack | Cultural Consensus Theory applications to data |

2014-08-20 | GLSME | Generalized Least Squares with Measurement Error |

2014-08-20 | hydrostats | Hydrologic indices for daily time series data |

2014-08-20 | matpow | matrix powers |

2014-08-20 | mokken | Mokken Scale Analysis in R |

2014-08-20 | opencpu | The OpenCPU system for embedded scientific computing and reproducible research |

2014-08-20 | RcppMLPACK | Rcpp integration for MLPACK library |

2014-08-20 | reldist | Relative Distribution Methods |

2014-08-20 | robumeta | Robust variance meta-regression |

2014-08-20 | rsunlight | Interface to Sunlight Foundation APIs |

2014-08-20 | x.ent | eXtraction of ENTity |

2014-08-19 | arules | Mining Association Rules and Frequent Itemsets |

2014-08-19 | DStree | Recursive Partitioning for Discrete-Time Survival Trees |

2014-08-19 | extlasso | Maximum penalized likelihood estimation with extended lasso penalty |

2014-08-19 | FD | Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology |

2014-08-19 | HSAUR | A Handbook of Statistical Analyses Using R |

2014-08-19 | HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |

2014-08-19 | HSAUR3 | A Handbook of Statistical Analyses Using R (3rd Edition) |

2014-08-19 | laeken | Estimation of indicators on social exclusion and poverty |

2014-08-19 | mRMRe | R package for parallelized mRMR ensemble feature selection |

2014-08-19 | RcmdrPlugin.EcoVirtual | Rcmdr EcoVirtual Plugin |

2014-08-19 | rite | The Right Editor to Write R |

2014-08-19 | spartan | Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN) |

2014-08-19 | teigen | Model-based clustering and classification with the multivariate t-distribution |

2014-08-19 | TukeyC | Conventional Tukey Test |

2014-08-18 | BayesX | R Utilities Accompanying the Software Package BayesX |

2014-08-18 | bigmemory.sri | A shared resource interface for Bigmemory Project packages |

2014-08-18 | gap | Genetic analysis package |

2014-08-18 | geigen | Calculate generalized eigenvalues of a matrix pair |

2014-08-18 | grplasso | Fitting user specified models with Group Lasso penalty |

2014-08-18 | kedd | Kernel Estimator and Bandwidth Selection for Density and its Derivatives |

2014-08-18 | list | Statistical Methods for the Item Count Technique and List Experiment |

2014-08-18 | lmmot | Multiple Ordinal Tobit (MOT) model |

2014-08-18 | mvrtn | Mean and Variance of Truncated Normal Distribution |

2014-08-18 | PhyActBedRest | Marks periods of sleep in Actigraph accelerometer data |

2014-08-18 | recommenderlab | Lab for Developing and Testing Recommender Algorithms |

2014-08-18 | rfordummies | Code examples to accompany the book "R for Dummies" |

2014-08-18 | robCompositions | Robust Estimation for Compositional Data |

2014-08-18 | synthpop | Generating synthetic versions of sensitive microdata for statistical disclosure control |

2014-08-18 | wildlifeDI | Calculate Indices of Dynamic Interaction for Wildlife Telemetry Data |

2014-08-17 | classify | Classification Accuracy and Consistency under IRT models |

2014-08-17 | complmrob | Robust linear regression with compositional data as covariates |

2014-08-17 | gglasso | Group Lasso Penalized Learning Using A Unified BMD Algorithm |

2014-08-17 | LPmerge | Merging linkage maps by linear programming |

2014-08-17 | PTAk | Principal Tensor Analysis on k modes |

2014-08-17 | W3CMarkupValidator | R Interface to W3C Markup Validation Services |

2014-08-17 | WikipediR | A MediaWiki API wrapper |

2014-08-16 | car | Companion to Applied Regression |

2014-08-16 | EcoVirtual | Simulation of Ecological Models |

2014-08-16 | ELT | ELT - A package to build Experience Life Tables |

2014-08-16 | planar | Multilayer optics |

2014-08-16 | RECA | Relevant Component Analysis for Supervised Distance Metric Learning |

2014-08-16 | RGoogleAnalytics | R Wrapper for the Google Analytics API |

2014-08-16 | RootsExtremaInflections | Finds roots, extrema and inflection points of a curve |

2014-08-16 | snpar | Supplementary Non-parametric Statistics Methods |

2014-08-16 | tbart | Teitz and Bart p-median algorithm |

2014-08-15 | BBEST | Bayesian Estimation of Incoherent Neutron scattering Backgrounds |

2014-08-15 | COUNT | Functions, data and code for count data |

2014-08-15 | CVTuningCov | Regularized Estimators of Covariance Matrices with CV Tuning |

2014-08-15 | gCat | Graph-based two-sample tests for categorical data |

2014-08-15 | phtt | Panel Data Analysis with Heterogeneous Time Trends |

2014-08-15 | pycno | Pycnophylactic Interpolation |

2014-08-15 | rnrfa | UK National River Flow Archive data from R |

2014-08-15 | rowr | Row-based functions for R objects |

2014-08-15 | rprintf | Adaptive builder for formatted strings |

2014-08-15 | Rttf2pt1 | Package for ttf2pt1 program |

2014-08-15 | rtype | A strong type system for R |

2014-08-15 | semPlot | Path diagrams and visual analysis of various SEM packages' output |

2014-08-15 | survey | analysis of complex survey samples |

2014-08-15 | Vdgraph | This package creates variance dispersion graphs and fraction of design space plots for response surface designs |

2014-08-14 | AntWeb | programmatic interface to the AntWeb |

2014-08-14 | bamboo | Protein Secondary Structure Prediction Using the Bamboo Method |

2014-08-14 | bayesPop | Probabilistic Population Projection |

2014-08-14 | CBPS | R Package for Covariate Balancing Propensity Score |

2014-08-14 | effects | Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models |

2014-08-14 | fastGHQuad | Fast Rcpp implementation of Gauss-Hermite quadrature |

2014-08-14 | hmmm | hierarchical multinomial marginal models |

2014-08-14 | OceanView | Visualisation of Oceanographic Data and Model Output |

2014-08-14 | RFLPtools | Tools to analyse RFLP data |

2014-08-14 | spatialTailDep | Estimation of spatial tail dependence models |

2014-08-14 | trimTrees | Trimmed opinion pools of trees in a random forest |

2014-08-14 | XLConnect | Excel Connector for R |

2014-08-14 | XLConnectJars | JAR dependencies for the XLConnect package |

2014-08-13 | BlandAltmanLeh | Plots (slightly extended) Bland-Altman plots |

2014-08-13 | DataCombine | R tools for making it easier to combine and clean data sets |

2014-08-13 | dicionariosIBGE | Dictionaries for reading microdata surveys from IBGE |

2014-08-13 | dynsim | An R implementation of dynamic simulations of autoregressive relationships |

2014-08-13 | growthrate | Bayesian reconstruction of growth velocity |

2014-08-13 | grpreg | Regularization paths for regression models with grouped covariates |

2014-08-13 | HAC | Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC) |

2014-08-13 | LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring Genotypes |

2014-08-13 | linkcomm | Tools for Generating, Visualizing, and Analysing Link Communities in Networks |

2014-08-13 | optmatch | Functions for optimal matching |

2014-08-13 | ReporteRs | Microsoft Word, Microsoft Powerpoint and HTML documents generation from R |

2014-08-13 | ReporteRsjars | External jars required for package ReporteRs |

2014-08-13 | rockchalk | Regression Estimation and Presentation |

2014-08-13 | tvd | Total Variation Denoising |

2014-08-12 | astrodatR | Astronomical Data |

2014-08-12 | cAIC4 | Conditional Akaike information criterion for lme4 |

2014-08-12 | cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |

2014-08-12 | ergm.graphlets | ergm.graphlets: A Package for ERG Modeling Based on Graphlet Properties |

2014-08-12 | lfstat | Calculation of Low Flow Statistics for daily stream flow data |

2014-08-12 | LindenmayeR | Functions to Explore L-Systems (Lindenmayer Systems) |

2014-08-12 | msarc | Draws diagrams (mis)representing the results of mass spec experiments |

2014-08-12 | MuMIn | Multi-model inference |

2014-08-12 | psych | Procedures for Psychological, Psychometric, and Personality Research |

2014-08-12 | R4CouchDB | A R convenience layer for CouchDB |

2014-08-12 | random.polychor.pa | A Parallel Analysis With Polychoric Correlation Matrices |

2014-08-12 | rfPermute | Estimate Permutation p-values for Random Forest Importance Metrics |

2014-08-12 | RLRsim | Exact (Restricted) Likelihood Ratio tests for mixed and additive models |

2014-08-12 | swfscMisc | Miscellaneous Functions for Southwest Fisheries Science Center |

2014-08-12 | twostageTE | Two-Stage Threshold Estimation |

2014-08-12 | Xmisc | Xiaobei's miscellaneous classes and functions |

2014-08-11 | accelerometry | Functions for processing minute-to-minute accelerometer data |

2014-08-11 | apt | Asymmetric Price Transmission (apt) |

2014-08-11 | CARBayesST | Poisson Log-linear Models with Spatio-temporal Random Effects |

2014-08-11 | crs | Categorical Regression Splines |

2014-08-11 | erer | Empirical Research in Economics with R |

2014-08-11 | GrammR | Graphical Representation and Modeling of Metagenomic Reads |

2014-08-11 | HardyWeinberg | Graphical tests for Hardy-Weinberg equilibrium |

2014-08-11 | hdi | High-Dimensional Inference |

2014-08-11 | ibeemd | Irregular-lattice based ensemble empirical mode decomposition |

2014-08-11 | LakeMetabolizer | Tools for the analysis of ecosystem metabolism |

2014-08-11 | lgtdl | A set of methods for longitudinal data objects |

2014-08-11 | MALDIquant | Quantitative Analysis of Mass Spectrometry Data |

2014-08-11 | MALDIquantForeign | Import/Export routines for MALDIquant |

2014-08-11 | MicroDatosEs | Utilities for Official Spanish Microdata |

2014-08-11 | OutbreakTools | basic tools for the analysis of disease outbreaks |

2014-08-11 | summarytools | Dataframe Summaries, Frequency Tables and Numerical Summaries with Customizable Output |

2014-08-11 | threeboost | Thresholded variable selection and prediction based on estimating equations |

2014-08-11 | tigerstats | R for Elementary Statistics |

2014-08-11 | vartors | Transform Definition of Variables to R Scripts |

2014-08-11 | wfe | Weighted Linear Fixed Effects Regression Models for Causal Inference |

2014-08-11 | XBRL | Extraction of business financial information from XBRL documents |

2014-08-10 | alleHap | Allele simulation and Haplotype reconstruction from pedigree databases |

2014-08-10 | hglasso | Learning graphical models with hubs |

2014-08-10 | RWebLogo | plotting custom sequence logos |

2014-08-10 | tiger | TIme series of Grouped ERrors |

2014-08-10 | UScancer | Create US cancer datasets from SEER, IARC, and US Census data |

2014-08-10 | vrtest | Variance Ratio tests and other tests for Martingale Difference Hypothesis |

2014-08-09 | astrolibR | Astronomy Users Library |

2014-08-09 | bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |

2014-08-09 | binseqtest | Exact Binary Sequential Designs and Analysis |

2014-08-09 | CHAT | Clonal Heterogeneity Analysis Tool |

2014-08-09 | dglars | Differential Geometric LARS (dgLARS) method |

2014-08-09 | distr | Object oriented implementation of distributions |

2014-08-09 | ecipex | Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models |

2014-08-09 | growfunctions | Bayesian non-parametric dependent models for time-indexed functional data |

2014-08-09 | hexbin | Hexagonal Binning Routines |

2014-08-09 | muhaz | Hazard Function Estimation in Survival Analysis |

2014-08-09 | mvmeta | Multivariate and Univariate Meta-Analysis and Meta-Regression |

2014-08-09 | NScluster | Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models |

2014-08-09 | SnowballC | Snowball stemmers based on the C libstemmer UTF-8 library |

2014-08-09 | SNSequate | Standard and Nonstandard Statistical Models and Methods for Test Equating |

2014-08-09 | sybilcycleFreeFlux | cycle-Free Flux balance analysis: Efficient removal of thermodynamically infeasible cycles from metabolic flux distributions |

2014-08-08 | itertools2 | itertools2: Functions creating iterators for efficient looping |

2014-08-08 | LDRTools | Tools for Linear Dimension Reduction |

2014-08-08 | pedometrics | Pedometric Tools and Techniques |

2014-08-08 | portes | Portmanteau Tests for Univariate and Multivariate Time Series Models |

2014-08-08 | rgp | R genetic programming framework |

2014-08-08 | RTriangle | Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator |

2014-08-08 | SpatialPack | Package for analysis of spatial data |

2014-08-08 | strap | Stratigraphic Tree Analysis for Palaeontology |

2014-08-08 | treeclim | Numerical calibration of proxy-climate relationships |

2014-08-08 | wbs | Wild Binary Segmentation for multiple change-point detection |

2014-08-07 | HWxtest | Exact Tests for Hardy-Weinberg Proportions |

2014-08-07 | RGENERATE | RGENERATE A tool for generation random variable time series using the tools of 'vars' or 'RMAWGEN' |

2014-08-07 | xergm | Extensions for Exponential Random Graph Models (ERGM) |

2014-08-06 | BioMark | Find biomarkers in two-class discrimination problems |

2014-08-06 | colourlovers | R client for the COLOURlovers API |

2014-08-06 | epiR | An R package for the analysis of epidemiological data |

2014-08-06 | federalregister | Client package for the U.S. Federal Register API |

2014-08-06 | GeneticTools | Collection of Genetic Data Analysis Tools |

2014-08-06 | gMWT | Generalized Mann-Whitney Type Tests |

2014-08-06 | heatmapFit | Fit statistic for binary dependent variable models |

2014-08-06 | klaR | Classification and visualization |

2014-08-06 | osDesign | Design and analysis of observational studies |

2014-08-06 | rags2ridges | Ridge Estimation of Precision Matrices from High-Dimensional Data |

2014-08-06 | rje | Miscellaneous useful functions |

2014-08-06 | RNeXML | Implement semantically rich I/O for NeXML format |

2014-08-05 | dave | Functions for "Data Analysis in Vegetation Ecology" |

2014-08-05 | dendroextras | Extra functions to cut, label and colour dendrogram clusters |

2014-08-05 | dlnm | Distributed Lag Non-linear Models |

2014-08-05 | EMMIXuskew | Fitting Unrestricted Multivariate Skew t Mixture Models |

2014-08-05 | expp | Spatial analysis of extra-pair paternity |

2014-08-05 | hitandrun | "Hit and Run" method for sampling uniformly from convex shapes |

2014-08-05 | hmm.discnp | Hidden Markov models with discrete non-parametric observation distributions |

2014-08-05 | MXM | Discovering multiple, statistically-equivalent signatures |

2014-08-05 | rfigshare | an R interface to figshare.com |

2014-08-05 | SDMTools | Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises |

2014-08-04 | BHMSMAfMRI | Bayesian hierarchical multi-subject multiscale analysis of functional MRI data |

2014-08-04 | breakaway | Species richness estimation and modelling |

2014-08-04 | ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |

2014-08-04 | decctools | Get energy data from the UK Dept of Energy and Climate Change |

2014-08-04 | EIAdata | R Wrapper for the Energy Information Administration (EIA) API |

2014-08-04 | kohonen | Supervised and unsupervised self-organising maps |

2014-08-04 | MixedTS | Mixed Tempered Stable Distribution |

2014-08-04 | nloptr | R interface to NLopt |

2014-08-04 | npsm | Package for Nonparametric Statistical Methods using R |

2014-08-04 | phonTools | Functions for phonetics in R |

2014-08-04 | pomp | Statistical inference for partially observed Markov processes |

2014-08-04 | RKEA | R/KEA interface |

2014-08-04 | RWekajars | R/Weka interface jars |

2014-08-04 | squash | Color-based plots for multivariate visualization |

2014-08-04 | symmoments | Symbolic central and noncentral moments of the multivariate normal distribution |

2014-08-03 | deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |

2014-08-03 | interAdapt | interAdapt |

2014-08-03 | mmod | Modern measures of population differentiation |

2014-08-03 | PottsUtils | Utility Functions of the Potts Models |

2014-08-03 | rPython | Package allowing R to call Python |

2014-08-03 | sanitizers | C/C++ source code to trigger Address and Undefined Behaviour Sanitizers |

2014-08-03 | sem | Structural Equation Models |

2014-08-03 | statfi | statfi R tools |

2014-08-03 | vcd | Visualizing Categorical Data |

2014-08-02 | CerioliOutlierDetection | Outlier detection using the iterated RMCD method of Cerioli (2010) |

2014-08-02 | gettingtothebottom | Getting to the Bottom, A Package for Learning Optimization Methods |

2014-08-02 | MGRASTer | API Client for the MG-RAST Server of the US DOE KBase |

2014-08-02 | topologyGSA | Gene Set Analysis Exploiting Pathway Topology |

2014-08-02 | xlsx | Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files |

2014-08-01 | coenocliner | Coenocline simulation |

2014-08-01 | descr | Descriptive statistics |

2014-08-01 | emil | Evaluation of Modeling without Information Leakage |

2014-08-01 | Familias | Probabilities for Pedigrees given DNA data |

2014-08-01 | fanplot | Visualisation of sequential probability distributions using fan charts |

2014-08-01 | ic.infer | Inequality constrained inference in linear normal situations |

2014-08-01 | LinearizedSVR | Linearized Support Vector Regression |

2014-08-01 | LPStimeSeries | Learned Pattern Similarity and Representation for Time Series |

2014-08-01 | optiscale | Optimal scaling |

2014-08-01 | qdapDictionaries | Dictionaries and word lists for the qdap package |

2014-08-01 | SIS | Sure Independence Screening |

2014-08-01 | subgroup | Methods for exploring treatment effect heterogeneity in subgroup analysis of clinical trials |

2014-07-31 | agsemisc | Miscellaneous plotting and utility functions |

2014-07-31 | aoristic | aoristic analysis with spatial output (kml) |

2014-07-31 | bayou | Bayesian fitting of Ornstein-Uhlenbeck models to phylogenies |

2014-07-31 | ctv | CRAN Task Views |

2014-07-31 | FrF2 | Fractional Factorial designs with 2-level factors |

2014-07-31 | fslr | Wrapper functions for FSL (FMRIB Software Library) from Functional MRI. of the Brain (FMRIB) |

2014-07-31 | GeoDE | A geometrical Approach to Differential expression and gene-set enrichment |

2014-07-31 | GNE | Computation of generalized Nash equilibria |

2014-07-31 | mvSLOUCH | MultiVariate Stochastic Linear Ornstein-Uhlenbeck models for phylogenetic Comparative hypotHeses |

2014-07-31 | plotKML | Visualization of spatial and spatio-temporal objects in Google Earth |

2014-07-31 | RefFreeEWAS | EWAS using reference-Free DNA methylation mixture deconvolution |

2014-07-31 | rgbif | Interface to the Global Biodiversity Information Facility API |

2014-07-31 | SAPP | Statistical Analysis of Point Processes |

2014-07-31 | spnet | Plotting (social) networks on maps |

2014-07-31 | timsac | TIMe Series Analysis and Control package |

2014-07-31 | wskm | Weighted k-means Clustering |

2014-07-30 | arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |

2014-07-30 | btf | Estimates univariate function via Bayesian trend filtering |

2014-07-30 | codep | Multiscale Codependence Analysis |

2014-07-30 | CRF | CRF - Conditional Random Fields |

2014-07-30 | ExceedanceTools | Confidence regions for exceedance sets and contour lines |

2014-07-30 | metafor | Meta-Analysis Package for R |

2014-07-30 | miceadds | Some additional multiple imputation functions, especially for mice |

2014-07-30 | mwa | MWA package for causal inference in spatiotemporal event data |

2014-07-30 | rareGE | Testing Gene-Environment Interaction for Rare Genetic Variants |

2014-07-30 | RbioRXN | RbioRXN - process Rhea, KEGG, MetaCyc, Unipathway biochemical reaction data |

2014-07-30 | tmap | Thematic Maps |

2014-07-29 | hasseDiagram | Drawing Hasse diagram |

2014-07-29 | lctools | Local Correlation, Spatial Inequalities and other tools |

2014-07-29 | NeatMap | Non-clustered heatmap alternatives |

2014-07-29 | netmeta | Network meta-analysis with R |

2014-07-29 | pheno2geno | Pheno2Geno - Generating genetic markers and maps from molecular phenotypes |

2014-07-29 | phreeqc | R interface to the phreeqc geochemical modeling program |

2014-07-29 | poppr | an R package for genetic analysis of populations with mixed reproduction |

2014-07-29 | psychomix | Psychometric Mixture Models |

2014-07-29 | RCurl | General network (HTTP/FTP/...) client interface for R |

2014-07-29 | RODBCext | Parameterized queries extension for RODBC |

2014-07-29 | rorutadis | Robust Ordinal Regression UTADIS |

2014-07-29 | stocc | Fit a spatial occupancy model via Gibbs sampling |

2014-07-28 | care | High-Dimensional Regression and CAR Score Variable Selection |

2014-07-28 | cosinor | Tools for estimating and predicting the cosinor model |

2014-07-28 | cplexAPI | R Interface to C API of IBM ILOG CPLEX |

2014-07-28 | cvxclustr | Splitting methods for convex clustering |

2014-07-28 | discreteRV | Functions to create and manipulate discrete random variables |

2014-07-28 | drfit | Dose-response data evaluation |

2014-07-28 | GeneNet | Modeling and Inferring Gene Networks |

2014-07-28 | Gmisc | Collection of functions for plotting relations, generating tables, and more |

2014-07-28 | gmp | Multiple Precision Arithmetic |

2014-07-28 | LowRankQP | Low Rank Quadratic Programming |

2014-07-28 | ltbayes | Simulation-Based Bayesian Inference for Latent Traits of Item Response Models |

2014-07-28 | peptider | Evaluation of diversity in nucleotide libraries |

2014-07-28 | pryr | Tools for computing on the language |

2014-07-28 | RJSONIO | Serialize R objects to JSON, JavaScript Object Notation |

2014-07-28 | rYoutheria | Access to the YouTheria mammal trait database |

2014-07-28 | sda | Shrinkage Discriminant Analysis and CAT Score Variable Selection |

2014-07-27 | GrapheR | A multi-platform GUI for drawing customizable graphs in R |

2014-07-27 | KFKSDS | Kalman Filter, Smoother and Disturbance Smoother |

2014-07-27 | migest | Useful R code for the Estimation of Migration |

2014-07-27 | stsm | Structural Time Series Models |

2014-07-26 | dcmr | Attribute profile estimation using Diagnostic Classification Models and MCMC |

2014-07-26 | DiscML | DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood |

2014-07-26 | influence.SEM | Case Influence in Structural Equation Models |

2014-07-26 | infotheo | Information-Theoretic Measures |

2014-07-26 | lpSolve | Interface to Lp_solve v. 5.5 to solve linear/integer programs |

2014-07-26 | OUwie | Analysis of evolutionary rates in an OU framework |

2014-07-26 | stsm.class | Class and Methods for Structural Time Series Models |

2014-07-25 | animation | A gallery of animations in statistics and utilities to create animations |

2014-07-25 | AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |

2014-07-25 | inTrees | Interpret Tree Ensembles |

2014-07-25 | MSBVAR | Markov-Switching, Bayesian, Vector Autoregression Models |

2014-07-25 | nicheROVER | (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches |

2014-07-25 | phylin | Spatial interpolation of genetic data |

2014-07-25 | quantregGrowth | Growth charts via regression quantiles |

2014-07-25 | Rankcluster | Model-based clustering for multivariate partial ranking data |

2014-07-25 | rngWELL | toolbox for WELL random number generators |

2014-07-25 | TreeSimGM | Simulating Phylogenetic Trees under a General Model |

2014-07-24 | imguR | Imgur API Client Package for R |

2014-07-24 | lmerTest | Tests for random and fixed effects for linear mixed effect models (lmer objects of lme4 package) |

2014-07-24 | ManyTests | Multiple testing procedures of Cox (2011) and Wang and Cox (2007) |

2014-07-24 | mtk | Mexico ToolKit library (MTK) |

2014-07-24 | pocrm | Dose-finding in drug combination Phase I trials using the partial order continual reassessment method (PO-CRM) |

2014-07-24 | randtoolbox | toolbox for pseudo and quasi random number generation and RNG tests |

2014-07-24 | RItools | Randomization inference tools |

2014-07-24 | rvalues | Computation of r-values for ranking in high-dimensional settings |

2014-07-24 | sensitivitymw | Sensitivity analysis using weighted M-statistics |

2014-07-24 | spuRs | Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R" |

2014-07-24 | ssh.utils | Local and remote system commands with output and error capture |

2014-07-24 | tables | Formula-driven table generation |

2014-07-23 | acp | Autoregressive Conditional Poisson |

2014-07-23 | CAvariants | Correspondence Analysis Variants |

2014-07-23 | deltaPlotR | Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method |

2014-07-23 | ecospat | Spatial ecology miscellaneous methods |

2014-07-23 | Epi | A package for statistical analysis in epidemiology |

2014-07-23 | hglm.data | Data for The hglm Package |

2014-07-23 | hts | Hierarchical and grouped time series |

2014-07-23 | IBDhaploRtools | Functions for the Analysis of IBD Haplo output |

2014-07-23 | mada | Meta-Analysis of Diagnostic Accuracy (mada) |

2014-07-23 | miscFuncs | Miscellaneous Useful Functions |

2014-07-23 | MPAgenomics | Multi-Patient Analysis of Genomic Markers |

2014-07-23 | ReorderCluster | Reordering the dendrogram according to the class labels |

2014-07-23 | rnaseqWrapper | Wrapper for several R packages and scripts to automate RNA-seq analysis |

2014-07-23 | survsim | Simulation of simple and complex survival data |

2014-07-22 | AdaptFitOS | Adaptive Semiparametric Regression with Simultaneous Confidence Bands |

2014-07-22 | babynames | US baby names 1880-2013 |

2014-07-22 | clinfun | Clinical Trial Design and Data Analysis Functions |

2014-07-22 | fueleconomy | EPA fuel economy data |

2014-07-22 | glasso | Graphical lasso- estimation of Gaussian graphical models |

2014-07-22 | kinship2 | Pedigree functions |

2014-07-22 | leapp | latent effect adjustment after primary projection |

2014-07-22 | MDPtoolbox | Markov Decision Processes toolbox |

2014-07-22 | mewAvg | A Fixed Memeory Moving Expanding Window Average |

2014-07-22 | nasaweather | Collection of datasets from the ASA 2006 data expo |

2014-07-22 | nontargetData | Quantized simulation data of isotope pattern centroids |

2014-07-22 | nycflights13 | Data about flights departing NYC in 2013 |

2014-07-22 | Rcpp11 | R and C++11 |

2014-07-22 | RMRAINGEN | RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values |

2014-07-22 | rnbn | Access NBN data |

2014-07-22 | rplos | Interface to PLoS Journals search API |

2014-07-22 | SPACECAP | A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models |

2014-07-22 | splusTimeDate | Times and Dates from S-PLUS |

2014-07-21 | BayesBridge | Bridge Regression |

2014-07-21 | BayesLogit | Logistic Regression |

2014-07-21 | bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |

2014-07-21 | BTYD | Implementing Buy 'Til You Die Models |

2014-07-21 | class | Functions for Classification |

2014-07-21 | densityClust | Clustering by fast search and find of density peaks |

2014-07-21 | gamm4 | Generalized additive mixed models using mgcv and lme4 |

2014-07-21 | GeoGenetix | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |

2014-07-21 | gss | General Smoothing Splines |

2014-07-21 | HSSVD | Biclustering with heterogeneous variance |

2014-07-21 | icd9 | Tools for Working with ICD-9 Codes, and Finding Comorbidities |

2014-07-21 | ineq | Measuring Inequality, Concentration, and Poverty |

2014-07-21 | msme | Functions and Datasets for "Methods of Statistical Model Estimation" |

2014-07-21 | RANN | Fast Nearest Neighbour Search (wraps Arya and Mount's ANN library) |

2014-07-21 | rnoaa | NOAA climate data from R |

2014-07-21 | SASxport | Read and Write SAS XPORT Files |

2014-07-21 | SuperLearner | Super Learner Prediction |

2014-07-21 | TableMonster | Table Monster |

2014-07-21 | texreg | Conversion of R regression output to LaTeX or HTML tables |

2014-07-21 | tidyr | Easily tidy data with spread and gather functions |

2014-07-20 | astrochron | An R Package for Astrochronology |

2014-07-20 | coxinterval | Cox-type models for interval-censored data |

2014-07-20 | ecp | Nonparametric Multiple Change Point Analysis of Multivariate Data |

2014-07-20 | ExomeDepth | Calls CNV from exome sequence data |

2014-07-20 | gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |

2014-07-20 | ProgGUIinR | support package for "Programming Graphical User Interfaces in R" |

2014-07-20 | SBRect | Detecting structural breaks using rectangle covering (non-parametric method) |

2014-07-19 | ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |

2014-07-19 | geomorph | Geometric morphometric analyses of 2d/3d landmark data |

2014-07-19 | lme4 | Linear mixed-effects models using Eigen and S4 |

2014-07-19 | pcnetmeta | Methods for patient-centered network meta-analysis |

2014-07-19 | permGPU | permPGU: Using GPUs in Statistical Genomics |

2014-07-19 | plsRcox | Partial least squares Regression for Cox models and related techniques |

2014-07-19 | plsRglm | Partial least squares Regression for generalized linear models |

2014-07-19 | RGtk2 | R bindings for Gtk 2.8.0 and above |

2014-07-19 | slp | Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers |

2014-07-19 | TEQR | Target Equivalence Range Design |

2014-07-19 | yhatr | R binder for the Yhat API |

2014-07-18 | bezier | Bezier Curve and Spline Toolkit |

2014-07-18 | cherry | Multiple testing methods for exploratory research |

2014-07-18 | colorscience | Color Science methods and data |

2014-07-18 | fuzzyMM | Map Matching Using Fuzzy Logic |

2014-07-18 | mem | Moving Epidemic Method R Package |

2014-07-18 | sdcMicro | Statistical Disclosure Control methods for anonymization of microdata and risk estimation |

2014-07-18 | siRSM | Single-Index Response Surface Models |

2014-07-18 | SMNCensReg | Fitting univariate censored regression model under the scale mixture of normal distributions |

2014-07-17 | crrstep | Stepwise covariate selection for the Fine & Gray competing risks regression model |

2014-07-17 | flora | tools for interacting with the Brazilian Flora Checklist |

2014-07-17 | mvcwt | Wavelet analysis of multiple time series |

2014-07-17 | nscancor | Non-Negative and Sparse CCA |

2014-07-17 | nsprcomp | Non-Negative and Sparse PCA |

2014-07-17 | randomForest | Breiman and Cutler's random forests for classification and regression |

2014-07-17 | RTDE | Robust Tail Dependence Estimation |

2014-07-16 | functional | Curry, Compose, and other higher-order functions |

2014-07-16 | GCAI.bias | Guided Correction Approach for Inherited bias (GCAI.bias) |

2014-07-16 | hillmakeR | Perform occupancy analysis |

2014-07-16 | hpcwld | High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion |

2014-07-16 | NAPPA | Performs the processing and normalisation of Nanostring miRNA and mRNA data |

2014-07-16 | ORCME | Order Restricted Clustering for Microarray Experiments |

2014-07-16 | PCovR | Principal Covariates Regression |

2014-07-16 | phaseR | Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems |

2014-07-16 | questionr | Functions to make surveys processing easier |

2014-07-16 | SigTree | Identify and visualize significantly responsive branches in a phylogenetic tree |

2014-07-16 | translate | Bindings for the Google Translate API v2 |

2014-07-16 | TSP | Traveling Salesperson Problem (TSP) |

2014-07-15 | ape | Analyses of Phylogenetics and Evolution |

2014-07-15 | archdata | Example Datasets from Archaeological Research |

2014-07-15 | clickstream | Analyzes clickstreams based on Markov chains |

2014-07-15 | countrycode | Convert country names and country codes |

2014-07-15 | DFIT | Differential Functioning of Items and Tests (DFIT) framework analyses |

2014-07-15 | ParallelForest | Random Forest Classification with Parallel Computing |

2014-07-15 | quad | Exact permutation moments of quadratic form statistics |

2014-07-15 | ROSE | ROSE: Random Over-Sampling Examples |

2014-07-15 | synchrony | Methods for computing spatial, temporal, and spatiotemporal statistics |

2014-07-15 | TSdist | Distance Measures for Time Series data |

2014-07-14 | cg | The cg package to compare groups |

2014-07-14 | dbarts | Discrete Bayesian Additive Regression Trees Sampler |

2014-07-14 | enviPat | Isotope pattern, profile and centroid calculation for mass spectrometry |

2014-07-14 | FatTailsR | Power Hyperbolic Functions and Kiener Distributions |

2014-07-14 | gdimap | Generalized Diffusion Magnetic Resonance Imaging |

2014-07-14 | IDPSurvival | Imprecise Dirichlet Process for Survival Analysis |

2014-07-14 | regress | Gaussian linear models with linear covariance structure |

2014-07-14 | SparseM | Sparse Linear Algebra |

2014-07-14 | stream | Infrastructure for Data Stream Mining |

2014-07-13 | d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |

2014-07-13 | Formula | Extended Model Formulas |

2014-07-13 | imputeLCMD | A collection of methods for left-censored missing data imputation |

2014-07-13 | pgmm | Parsimonious Gaussian mixture models |

2014-07-13 | QoLR | Analysis of Health-Related Quality of Life in oncology |

2014-07-13 | YuGene | YuGene: A simple approach to scale gene expression data derived from different platforms for integrated analyses |

2014-07-12 | FastHCS | R package to compute the FastHCS outlyingness index |

2014-07-12 | IAT | Functions to use with data from the Implicit Association Test |

2014-07-12 | mixture | Mixture Models for Clustering and Classification |

2014-07-12 | ncvreg | Regularization paths for SCAD- and MCP-penalized regression models |

2014-07-12 | r4ss | R code for Stock Synthesis |

2014-07-11 | abc | Tools for Approximate Bayesian Computation (ABC) |

2014-07-11 | popKorn | For interval estimation of mean of selected populations |

2014-07-11 | refund.wave | Wavelet-Domain Regression with Functional Data |

2014-07-11 | robustlmm | Robust Linear Mixed Effects Models |

2014-07-11 | tth | TeX to HTML/MathML Translators tth/ttm |

2014-07-11 | yaImpute | yaImpute: An R Package for k-NN Imputation |

2014-07-10 | BAMMtools | Analysis and visualization of macroevolutionary dynamics on phylogenetic trees |

2014-07-10 | CondReg | Condition Number Regularized Covariance Estimation |

2014-07-10 | COSINE | COndition SpecIfic sub-NEtwork |

2014-07-10 | irace | Iterated Racing Procedures |

2014-07-10 | likeLTD | Tools to determine DNA profile evidence |

2014-07-10 | metafolio | Metapopulation simulations for conserving salmon through portfolio optimization |

2014-07-10 | mvglmmRank | Multivariate Generalized Linear Mixed Models for Ranking Sports Teams |

2014-07-10 | planor | Generation of regular factorial designs |

2014-07-10 | pRSR | Test of periodicity using response surface regression |

2014-07-10 | robustvarComp | Robust Estimation of Variance Component Models |

2014-07-10 | rysgran | Grain size analysis, textural classifications and distribution of unconsolidated sediments |

2014-07-10 | StatMethRank | Statistical Methods for Ranking Data |

2014-07-10 | surv2sampleComp | Inference for model-free between-group parameters for censored survival data |

2014-07-09 | CNOGpro | Copy Numbers of Genes in prokaryotes |

2014-07-09 | crossReg | Confidence intervals for crossover points of two simple regression lines |

2014-07-09 | DTR | Estimation and comparison of dynamic treatment regimes |

2014-07-09 | INLABMA | Bayesian Model Averaging with INLA |

2014-07-09 | network | Classes for Relational Data |

2014-07-09 | translateR | Bindings for the Google and Microsoft Translation APIs |

2014-07-09 | verification | Weather Forecast Verification Utilities |

2014-07-09 | VideoComparison | Video comparison tool |

2014-07-08 | EvoRAG | Evolutionary Rates Across Gradients |

2014-07-08 | libamtrack | Computational routines for proton and ion radiotherapy |

2014-07-08 | msm | Multi-state Markov and hidden Markov models in continuous time |

2014-07-08 | mvtnorm | Multivariate Normal and t Distributions |

2014-07-08 | npcp | Some nonparametric tests for change-point detection in (multivariate) observations |

2014-07-08 | RcmdrPlugin.ROC | Rcmdr Receiver Operator Characteristic Plug-In package |

2014-07-08 | RmixmodCombi | Combining Mixture Components for Clustering |

2014-07-08 | sievetest | Sieve test reporting functions |

2014-07-08 | sms | Spatial Microsimulation |

2014-07-07 | biomod2 | Ensemble platform for species distribution modeling |

2014-07-07 | clusterSim | Searching for optimal clustering procedure for a data set |

2014-07-07 | CoClust | Copula based cluster analysis |

2014-07-07 | MCAvariants | Multiple Correspondence Analysis Variants |

2014-07-07 | muscle | Multiple Sequence Alignment |

2014-07-07 | plotSEMM | Graphing nonlinear latent variable interactions in SEMM |

2014-07-07 | readODS | Read ODS files and puts them into data frames |

2014-07-07 | rLakeAnalyzer | Package for the analysis of lake physics |

2014-07-06 | ca | Simple, Multiple and Joint Correspondence Analysis |

2014-07-06 | rkvo | Read Key/Value Pair Observations |

2014-07-05 | eive | An algorithm for reducing errors-in-variable bias in simple linear regression |

2014-07-05 | ForIT | Functions from the 2nd Italian Forest Inventory (INFC) |

2014-07-05 | TestScorer | GUI for entering test items and obtaining raw and transformed scores |

2014-07-05 | Thinknum | Thinknum Data Connection |

2014-07-05 | tm.plugin.factiva | Import articles from Factiva using the tm text mining framework |

2014-07-04 | CompGLM | Conway-Maxwell-Poisson GLM and distribution functions |

2014-07-04 | dslice | Dynamic slicing |

2014-07-04 | epi2loc | Epistatic and penetrance models for two-locus genetic interactions |

2014-07-04 | lvm4net | Latent Variable Models for Networks |

2014-07-04 | rinat | Access iNaturalist data through APIs |

2014-07-04 | SOD | SOD for multidimensional scaling |

2014-07-03 | Bayesianbetareg | Bayesian Beta regression: joint mean and precision modeling |

2014-07-03 | binr | Cut Numeric Values Into Evenly Distributed Groups |

2014-07-03 | CarletonStats | Functions For Statistics Classes At Carleton College |

2014-07-03 | fwi.fbp | Fire Weather Index System and Fire Behaviour Prediction System Calculations |

2014-07-03 | mcc | Moment Corrected Correlation |

2014-07-03 | morse | MOdelling tools for Reproduction and Survival data in Ecotoxicology |

2014-07-03 | movMF | Mixtures of von Mises-Fisher Distributions |

2014-07-03 | parallelMap | Unified interface to some popular parallelization back-ends for interactive usage and package development |

2014-07-03 | qualCI | Causal Inference with Qualitative and Ordinal Information on Outcomes |

2014-07-03 | spfrontier | Spatial Stochastic Frontier models estimation |

2014-07-03 | strum | STRUctural Modeling of Latent Variables for General Pedigree |

2014-07-02 | agridat | Agricultural datasets |

2014-07-02 | aprof | Amdahl's profiler, directed optimization made easy |

2014-07-02 | FunctionalNetworks | An algorithm for gene and gene set network inference |

2014-07-02 | heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |

2014-07-02 | hSDM | hierarchical Bayesian species distribution models |

2014-07-02 | LogConcDEAD | Log-concave Density Estimation in Arbitrary Dimensions |

2014-07-02 | MAVTgsa | Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest |

2014-07-02 | MicSim | Performing continuous-time microsimulation |

2014-07-02 | penMSM | Estimating regularized multistate models using L1 penalties |

2014-07-02 | PolyPatEx | Paternity exclusion in autopolyploid species |

2014-07-02 | PSAboot | Bootstrapping for Propensity Score Analysis |

2014-07-02 | sads | Maximum Likelihood Models for Species Abundance Distributions |

2014-07-02 | spatial.tools | R functions for working with spatial data |

2014-07-02 | SpatialTools | Tools for spatial data analysis |

2014-07-02 | spd | Semi Parametric Distribution |

2014-07-01 | arfima | Fractional ARIMA Time Series Modeling |

2014-07-01 | csn | Closed-skew normal distribution |

2014-07-01 | pcalg | Methods for graphical models and causal inference |

2014-07-01 | PRISMA | Protocol Inspection and State Machine Analysis |

2014-07-01 | Rcplex | R interface to CPLEX |

2014-07-01 | scoring | Proper scoring rules |

2014-07-01 | sparkTable | Sparklines and graphical tables for tex and html |

2014-07-01 | subsemble | An Ensemble Method for Combining Subset-Specific Algorithm Fits |

2014-07-01 | sudoku | Sudoku Puzzle Generator and Solver |

2014-06-30 | CORM | The Clustering of Regression Models Method |

2014-06-30 | diskmemoiser | Disk Memoisation For R |

2014-06-30 | GenBinomApps | Clopper-Pearson Confidence Interval and Generalized Binomial Distribution |

2014-06-30 | groc | Generalized Regression on Orthogonal Components |

2014-06-30 | miRtest | combined miRNA- and mRNA-testing |

2014-06-30 | mnormt | The multivariate normal and t distributions |

2014-06-30 | rioja | Analysis of Quaternary Science Data |

2014-06-30 | rmgarch | Multivariate GARCH models |

2014-06-30 | rococo | RObust rank COrrelation COefficient and test |

2014-06-30 | stressr | Fetch and plot financial stress index and component data |

2014-06-30 | subplex | Subplex optimization algorithm |

2014-06-29 | BANOVA | Hierarchical Bayesian ANOVA Models |

2014-06-29 | RPPanalyzer | Reads, annotates, and normalizes reverse phase protein array data |

2014-06-28 | dynBiplotGUI | dynBiplotGUI: Full Interactive GUI for Dynamic Biplot in R |

2014-06-28 | mvabund | statistical methods for analysing multivariate abundance data |

2014-06-28 | np | Nonparametric kernel smoothing methods for mixed data types |

2014-06-28 | npRmpi | Parallel nonparametric kernel smoothing methods for mixed data types |

2014-06-28 | refund | Regression with Functional Data |

2014-06-28 | stosim | Stochastic Simulator for Reliability Modeling of Repairable Systems |

2014-06-28 | tsoutliers | Automatic Detection of Outliers in Time Series |

2014-06-27 | bsts | Bayesian structural time series |

2014-06-27 | cond | Approximate conditional inference for logistic and loglinear models |

2014-06-27 | hsphase | Phasing, sire imputation, recombination events identification and pedigree reconstruction of half-sib families using SNP data |

2014-06-27 | icensmis | Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes |

2014-06-27 | likelihood | Methods for maximum likelihood estimation |

2014-06-27 | lpSolveAPI | R Interface for lp_solve version 5.5.2.0 |

2014-06-27 | rforensicbatwing | BATWING for calculating forensic trace-suspect match probabilities |

2014-06-27 | RSA | Response surface analysis |

2014-06-27 | sitar | SITAR growth curve analysis |

2014-06-27 | STEPCAM | ABC-SMC inference of the STEPCAM model |

2014-06-26 | apcluster | Affinity Propagation Clustering |

2014-06-26 | base64enc | Tools for base64 encoding |

2014-06-26 | beepr | Easily Play Notification Sounds on any Platform |

2014-06-26 | Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |

2014-06-26 | CovSel | Model-Free Covariate Selection |

2014-06-26 | dgmb | dgmb Simulating data for PLS structural models |

2014-06-26 | ezsim | provide an easy to use framework to conduct simulation |

2014-06-26 | gamboostLSS | Boosting Methods for GAMLSS |

2014-06-26 | pedigreemm | Pedigree-based mixed-effects models |

2014-06-26 | RelValAnalysis | Relative Value Analysis |

2014-06-26 | Rfit | Rank Estimation for Linear Models |

2014-06-26 | RJDBC | Provides access to databases through the JDBC interface |

2014-06-26 | sp23design | Design and Simulation of seamless Phase II-III Clinical Trials |

2014-06-25 | abctools | Tools for ABC analyses |

2014-06-25 | antitrust | Antitrust Library |

2014-06-25 | boolean3 | Boolean Binary Response Models |

2014-06-25 | changepoint | An R package for changepoint analysis |

2014-06-25 | csvread | Fast Specialized CSV File Loader |

2014-06-25 | dagbag | Learning directed acyclic graphs (DAGs) through bootstrap aggregating |

2014-06-25 | GB2 | Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation |

2014-06-25 | ngram | An n-gram Babbler |

2014-06-25 | nlsMicrobio | Nonlinear regression in predictive microbiology |

2014-06-25 | nlstools | Tools for nonlinear regression diagnostics |

2014-06-25 | PMCMR | Calculate Pairwise Multiple Comparisons of Mean Rank Sums |

2014-06-25 | SocialMediaMineR | A Social Media Search and Analytic Tool |

2014-06-25 | TopKLists | Inference, aggregation and visualization for top-k ranked lists |

2014-06-24 | bingat | Binary Graph Analysis Tools |

2014-06-24 | BoomSpikeSlab | MCMC for spike and slab regression |

2014-06-24 | bst | Gradient Boosting |

2014-06-24 | bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |

2014-06-24 | cati | Community Assembly by Traits: Individuals and beyond |

2014-06-24 | EasyStrata | Evaluation of stratified genome-wide association meta-analysis results |

2014-06-24 | fdakma | Functional Data Analysis: K-Mean Alignment |

2014-06-24 | FisHiCal | Iterative FISH-based Calibration of Hi-C Data |

2014-06-24 | ftsa | Functional time series analysis |

2014-06-24 | goftest | Classical Goodness-of-Fit Tests for Univariate Distributions |

2014-06-24 | InventorymodelPackage | Inventorymodel |

2014-06-24 | LS2Wstat | A Multiscale Test of Spatial Stationarity for LS2W processes |

2014-06-24 | matlab | MATLAB emulation package |

2014-06-24 | metasens | Advanced statistical methods to model and adjust for bias in meta-analysis |

2014-06-24 | mvpart | Multivariate partitioning |

2014-06-24 | optR | Optimization Toolbox for solving linear systems |

2014-06-24 | pedgene | Gene-level statistics for Pedigree Data |

2014-06-24 | revealedPrefs | Revealed preferences and microeconomic rationality |

2014-06-24 | RWBP | Detects spatial outliers using a Random Walk on Bipartite Graph |

2014-06-24 | rwt | Rice Wavelet Toolbox wrapper |

2014-06-24 | sampleSelection | Sample Selection Models |

2014-06-24 | weatherData | Get Weather Data from the Web |

2014-06-23 | DNAprofiles | DNA profiling evidence analysis |

2014-06-23 | GPvam | Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling |

2014-06-23 | mvoutlier | Multivariate outlier detection based on robust methods |

2014-06-23 | rClinicalCodes | R tools for integrating with the www.clinicalcodes.org repository |

2014-06-23 | sdcTable | Methods for statistical disclosure control in tabular data |

2014-06-23 | smacof | Multidimensional Scaling in R: SMACOF |

2014-06-22 | bayescount | Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC |

2014-06-22 | eegAnalysis | Tools for analysis and classification of electroencephalography (EEG) data |

2014-06-22 | mded | Measuring the difference between two empirical distributions |

2014-06-22 | MultiLCIRT | Multidimensional latent class Item Response Theory models |

2014-06-22 | pbdNCDF4 | Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files |

2014-06-22 | PracTools | Tools for Designing and Weighting Survey Samples |

2014-06-22 | support.BWS | Basic functions for supporting an implementation of best-worst scaling |

2014-06-22 | support.CEs | Basic functions for supporting an implementation of choice experiments |

2014-06-22 | TaoTeProgramming | Illustrations from Tao Te Programming |

2014-06-21 | aemo | Download and process AEMO price and demand data |

2014-06-21 | BBmisc | Miscellaneous helper functions for B. Bischl |

2014-06-21 | bcpmeta | Bayesian Multiple Changepoint Detection Using Metadata |

2014-06-21 | Boom | Bayesian Object Oriented Modeling |

2014-06-21 | ConnMatTools | Tools for working with connectivity matrices |

2014-06-21 | copulaedas | Estimation of Distribution Algorithms Based on Copulas |

2014-06-21 | funreg | funreg (Functional Regression for Irregularly Timed Data) |

2014-06-21 | markovchain | A package to handle and analyse discrete Markov chains |

2014-06-21 | runjags | Interface utilities, parallel computing methods and additional distributions for MCMC models in JAGS |

2014-06-20 | MPSEM | Modeling Phylogenetic Signals using Eigenvector Maps |

2014-06-20 | nadiv | Functions to construct (non)additive genetic relatedness matrices and facilitate animal model analyses |

2014-06-20 | parallelMCMCcombine | Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set |

2014-06-20 | pawacc | Physical activity with accelerometers |

2014-06-20 | usl | Analyze system scalability with the Universal Scalability Law |

2014-06-19 | CIDnetworks | Generative models for complex networks with conditionally independent dyadic structure |

2014-06-19 | CommunityCorrelogram | Ecological Community Correlogram |

2014-06-19 | hazus | Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters |

2014-06-19 | plotGoogleMaps | Plot spatial or spatio-temporal data over Google Maps |

2014-06-19 | pushoverr | Send push notifications using Pushover |

2014-06-19 | R2jags | A Package for Running jags from R |

2014-06-19 | RoughSets | Data Analysis Using Rough Set and Fuzzy Rough Set Theories |

2014-06-19 | StatMatch | Statistical Matching (aka data fusion) |

2014-06-18 | fmri | Analysis of fMRI experiments |

2014-06-18 | iGasso | Genetic association tests and utilities |

2014-06-18 | localsolver | R API to LocalSolver |

2014-06-18 | OmicKriging | OmicKriging for Phenotypic Prediction |

2014-06-18 | pse | Parameter space exploration with Latin Hypercubes |

2014-06-18 | rivervis | River Visualisation Tool |

2014-06-17 | bnlearn | Bayesian network structure learning, parameter learning and inference |

2014-06-17 | BradleyTerry2 | Bradley-Terry Models |

2014-06-17 | clogitL1 | Fitting exact conditional logistic regression with lasso and elastic net penalties |

2014-06-17 | cmprsk | Subdistribution Analysis of Competing Risks |

2014-06-17 | KernSmoothIRT | Nonparametric Item Response Theory |

2014-06-17 | marked | R Code for mark-recapture analysis |

2014-06-17 | marmap | Import, plot and analyze bathymetric and topographic data |

2014-06-17 | pmml | Generate PMML for various models |

2014-06-17 | pmmlTransformations | Transforms input data from a PMML perspective |

2014-06-17 | spcr | Sparse principal component regression |

2014-06-17 | streamMOA | stream - Interface to MOA Algorithms |

2014-06-17 | tictoc | Functions for timing R scripts, as well as implementations of Stack and List structures |

2014-06-17 | TreatmentSelection | Evaluate Treatment Selection Biomarkers |

2014-06-17 | vdg | Variance Dispersion Graphs and Fraction of Design Space Plots |

2014-06-16 | arnie | "Arnie" box office records 1982-2014 |

2014-06-16 | bizdays | Functions to handle business days calculations |

2014-06-16 | ipdw | ipdw: Interpolation by Inverse Path Distance Weighting |

2014-06-16 | nat.utils | File System Utility Functions for NeuroAnatomy Toolbox |

2014-06-16 | Rglpk | R/GNU Linear Programming Kit Interface |

2014-06-16 | RI2by2 | Randomization inference for treatment effects on a binary outcome |

2014-06-16 | sfsmisc | Utilities from Seminar fuer Statistik ETH Zurich |

2014-06-16 | StratSel | Strategic Selection Estimator |

2014-06-16 | textometry | Textual Data Analysis Package used by the TXM Software |

2014-06-15 | installr | Using R to install stuff (such as: R, Rtools, RStudio, git, and more!) |

2014-06-15 | Matrix | Sparse and Dense Matrix Classes and Methods |

2014-06-15 | NLPutils | Natural Language Processing Utilities |

2014-06-15 | RSKC | Robust sparse K-means |

2014-06-15 | tm.plugin.dc | Text Mining Distributed Corpus Plug-In |

2014-06-15 | xhmmScripts | XHMM R scripts |

2014-06-14 | babel | Ribosome profiling data analysis |

2014-06-14 | disclapmix | Discrete Laplace mixture inference using the EM algorithm |

2014-06-14 | rbitcoinchartsapi | R Package for the BitCoinCharts.com API |

2014-06-14 | table1xls | Produces summary tables and exports them to multi-tab spreadsheet format (.xls or .xlsx) |

2014-06-14 | WGCNA | Weighted Correlation Network Analysis |

2014-06-13 | AssetPricing | Optimal pricing of assets with fixed expiry date |

2014-06-13 | DeducerText | Deducer GUI for Text Data |

2014-06-13 | ElstonStewart | Elston-Stewart Algorithm |

2014-06-13 | ESGtoolkit | Toolkit for the simulation of financial assets and interest rates models |

2014-06-13 | PCDSpline | Semiparametric regression analysis of panel count data using monotone splines |

2014-06-13 | prim | Patient Rule Induction Method (PRIM) |

2014-06-13 | pROC | display and analyze ROC curves |

2014-06-13 | ReliabilityTheory | Tools for structural reliability analysis |

2014-06-13 | s2dverification | Set of common tools for model diagnostics |

2014-06-13 | wordcloud | Word Clouds |

2014-06-12 | apsimr | Edit, run and evaluate APSIM simulations from R easily |

2014-06-12 | clustMD | Model based clustering for mixed data |

2014-06-12 | CopyDetect | Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests |

2014-06-12 | Evapotranspiration | Evapotranspiration |

2014-06-12 | excursions | Functions that compute probabilistic excursion sets and contour credibility regions for latent Gaussian random processes and fields |

2014-06-12 | faraway | Functions and datasets for books by Julian Faraway |

2014-06-12 | flip | Multivariate Permutation Tests |

2014-06-12 | iterpc | Efficient iterator for permutations and combinations |

2014-06-12 | poweRlaw | Fitting heavy tailed distributions: the poweRlaw package |

2014-06-12 | QCA | A Package for Qualitative Comparative Analysis |

2014-06-12 | qVarSel | Variables Selection for Clustering and Classification |

2014-06-12 | RXMCDA | An XMCDA parser for R |

2014-06-12 | ustyc | Fetch US Treasury yield curve data |

2014-06-12 | yaml | Methods to convert R data to YAML and back |

2014-06-11 | conting | Bayesian analysis of contingency tables |

2014-06-11 | enaR | Tools for ecological network analysis (ena) in R |

2014-06-11 | JMbayes | Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach |

2014-06-11 | mice | Multivariate Imputation by Chained Equations |

2014-06-11 | munsellinterpol | Interpolation of Munsell renotation data to convert any hue and chroma values to CIE xyY, CIE XYZ, sRGB, CIE Lab or CIE Luv |

2014-06-11 | pvclass | P-values for Classification |

2014-06-11 | R.cache | Fast and light-weight caching (memoization) of objects and results to speed up computations |

2014-06-11 | tau | Text Analysis Utilities |

2014-06-11 | textcat | N-Gram Based Text Categorization |

2014-06-11 | tm | Text Mining Package |

2014-06-11 | tm.plugin.alceste | Import texts from files in the Alceste format using the tm text mining framework |

2014-06-11 | tm.plugin.europresse | Import articles from Europresse using the tm text mining framework |

2014-06-11 | tm.plugin.lexisnexis | Import articles from LexisNexis using the tm text mining framework |

2014-06-11 | tm.plugin.mail | Text Mining E-Mail Plug-In |

2014-06-11 | tm.plugin.webmining | Retrieve structured, textual data from various web sources |

2014-06-11 | topicmodels | Topic models |

2014-06-10 | BEDASSLE | Disentangles the effects of geographic and ecological isolation on genetic differentiation |

2014-06-10 | BEQI2 | Benthic Ecosystem Quality Index 2 |

2014-06-10 | BGLR | Bayesian Generalized Linear Regression |

2014-06-10 | evolvability | Calculation of evolvability parameters |

2014-06-10 | exams | Automatic Generation of Exams in R |

2014-06-10 | gsmoothr | Smoothing tools |

2014-06-10 | HiCseg | Detection of domains in HiC data |

2014-06-10 | ICsurv | A package for semiparametric regression analysis of interval-censored data |

2014-06-10 | openair | Tools for the analysis of air pollution data |

2014-06-10 | ORCI | Several confidence intervals for the odds ratio |

2014-06-10 | popdemo | Provides Tools For Demographic Modelling Using Projection Matrices |

2014-06-10 | PSCBS | Analysis of Parent-Specific DNA Copy Numbers |

2014-06-10 | qmap | Statistical transformations for post-processing climate model output |

2014-06-10 | RcppRedis | Rcpp bindings for Redis using the hiredis library |

2014-06-10 | rjson | JSON for R |

2014-06-10 | rlme | Rank-based Estimation and Prediction in Random Effects Nested Models |

2014-06-10 | RSNPset | RSNPset |

2014-06-10 | SCI | Standardized Climate Indices such as SPI, SRI or SPEI |

2014-06-10 | SeqFeatR | Calculates possible epitopes and co-mutations |

2014-06-10 | vcdExtra | vcd extensions and additions |

2014-06-09 | EBEN | Empirical Bayesian Elastic Net |

2014-06-09 | helsinki | Helsinki open data R tools |

2014-06-09 | IsoCI | Confidence intervals for current status data based on transformations and bootstrap |

2014-06-09 | MCMCglmm | MCMC Generalised Linear Mixed Models |

2014-06-09 | pgirmess | Data analysis in ecology |

2014-06-09 | primerTree | primerTree |

2014-06-08 | Boruta | A wrapper algorithm for all-relevant feature selection |

2014-06-08 | Luminescence | Package for Luminescence Dating data analysis |

2014-06-08 | R.rsp | Dynamic generation of scientific reports |

2014-06-08 | synlik | Synthetic Likelihood methods for intractable likelihoods |

2014-06-07 | C50 | C5.0 Decision Trees and Rule-Based Models |

2014-06-07 | compositions | Compositional Data Analysis |

2014-06-07 | Cubist | Rule- and Instance-Based Regression Modeling |

2014-06-07 | genasis | Global ENvironmental ASsessment Information System (GENASIS) computational tools |

2014-06-07 | hoardeR | hoardeR package |

2014-06-07 | Interact | Tests for marginal interactions in a 2 class response model |

2014-06-07 | io | A unified framework for input-output operations in R |

2014-06-07 | kobe | Tools for the provision of scientific fisheries management advice |

2014-06-07 | PortRisk | Portfolio Risk Analysis |

2014-06-07 | Rmalschains | Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R |

2014-06-06 | BEST | Bayesian Estimation Supersedes the t-Test |

2014-06-06 | equivalence | Provides tests and graphics for assessing tests of equivalence |

2014-06-06 | KFAS | Kalman Filter and Smoother for Exponential Family State Space Models |

2014-06-06 | memgene | Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps |

2014-06-06 | quantspec | Quantile-based Spectral Analysis of Time Series |

2014-06-06 | tweedie | Tweedie exponential family models |

2014-06-05 | AR1seg | Segmentation of an autoregressive Gaussian process of order 1 |

2014-06-05 | diffIRT | Diffusion IRT models for Response and Response Time Data |

2014-06-05 | maptools | Tools for reading and handling spatial objects |

2014-06-05 | mbest | Moment-Based Estimation for Hierarchical Models |

2014-06-05 | phylolm | Phylogenetic Linear Regression |

2014-06-05 | SpatialEpi | Methods and Data for Spatial Epidemiology |

2014-06-05 | vbsr | Variational Bayes Spike Regression Regularized Linear Models |

2014-06-04 | agRee | Various Methods for Measuring Agreement |

2014-06-04 | ChargeTransport | Charge Transfer Rates and Charge Carrier Mobilities |

2014-06-04 | GIGrvg | Random variate generator for the GIG distribution |

2014-06-04 | kequate | The kernel method of test equating |

2014-06-04 | rsdepth | Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis |

2014-06-04 | sas7bdat | SAS Database Reader (experimental) |

2014-06-04 | secrdesign | Sampling Design for Spatially Explicit Capture–Recapture |

2014-06-04 | sybil | sybil - Efficient Constrained Based Modelling in R |

2014-06-04 | zoib | Bayesian Inference for Zero/One Inflated Beta Regression |

2014-06-03 | ebSNP | Genotyping and SNP calling using single-sample next generation sequencing data |

2014-06-03 | gamlss.add | GAMLSS Additive |

2014-06-03 | gstudio | Analyses and functions related to the spatial analysis of genetic marker data |

2014-06-03 | mapdata | Extra Map Databases |

2014-06-03 | popgraph | This is an R package that constructs and manipulates population graphs |

2014-06-03 | sorvi | Finnish Open Government Data Toolkit |

2014-06-02 | adehabitatLT | Analysis of animal movements |

2014-06-02 | bayesLife | Bayesian Projection of Life Expectancy |

2014-06-02 | CORE | Cores of Recurrent Events |

2014-06-02 | dissUtils | Utilities for making pairwise comparisons of multivariate data |

2014-06-02 | HiveR | 2D and 3D Hive Plots for R |

2014-06-02 | lmomco | L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions |

2014-06-02 | Mposterior | Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures |

2014-06-02 | NCBI2R | NCBI2R-An R package to navigate and annotate genes and SNPs |

2014-06-02 | orloca | The package deals with Operations Research LOCational Analysis models |

2014-06-02 | rHealthDataGov | Retrieve data sets from the HealthData.gov data API |

2014-06-02 | tableone | Create "Table 1" to describe baseline characteristics |

2014-06-01 | acss | Algorithmic Complexity for Short Strings |

2014-06-01 | aster | Aster Models |

2014-06-01 | rmetasim | An individual-based population genetic simulation environment |

2014-05-31 | ChemoSpec | Exploratory Chemometrics for Spectroscopy |

2014-05-31 | ggtern | An extension to ggplot2, for the creation of ternary diagrams |

2014-05-31 | lasso2 | L1 constrained estimation aka ‘lasso’ |

2014-05-31 | pbdSLAP | Programming with Big Data – Scalable Linear Algebra Packages |

2014-05-31 | pbo | Probability of Backtest Overfitting |

2014-05-31 | RadOnc | Analytical Tools for Radiation Oncology |

2014-05-31 | RcppGSL | Rcpp integration for GNU GSL vectors and matrices |

2014-05-31 | ripa | R Image Processing and Analysis |

2014-05-31 | rplotengine | R as a plotting engine |

2014-05-31 | statmod | Statistical Modeling |

2014-05-31 | STPGA | Selection of Training Populations by Genetic Algorithm |

2014-05-31 | taRifx.geo | Collection of various spatial functions |

2014-05-30 | argparser | Command-line argument parser |

2014-05-30 | ARPobservation | Tools for simulating different methods of observing behavior based on alternating renewal processes |

2014-05-30 | chngpt | Change Point Logistic Regression |

2014-05-30 | GSIF | Global Soil Information Facilities |

2014-05-30 | IBDsim | Simulation of chromosomal regions shared by family members |

2014-05-30 | interventionalDBN | Interventional Inference for Dynamic Bayesian Networks |

2014-05-30 | kdetrees | Nonparametric method for identifying discordant phylogenetic trees |

2014-05-30 | mcprofile | Multiple Contrast Profiles |

2014-05-30 | mstate | Data preparation, estimation and prediction in multi-state models |

2014-05-30 | qcr | Quality control and reliability |

2014-05-30 | RSGHB | Functions for Hierarchical Bayesian Estimation: A Flexible Approach |

2014-05-30 | SensitivityCaseControl | Sensitivity Analysis for Case-Control Studies |

2014-05-30 | TBEST | Tree Branches Evaluated Statistically for Tightness |

2014-05-30 | wsrf | Weighted Subspace Random Forest |

2014-05-29 | bootruin | A bootstrap test for the probability of ruin in the classical risk process |

2014-05-29 | fda.usc | Functional Data Analysis and Utilities for Statistical Computing (fda.usc) |

2014-05-29 | hamlet | Hierarchical Optimal Matching and Machine Learning Toolbox |

2014-05-29 | LearnBayes | Functions for Learning Bayesian Inference |

2014-05-29 | pairwise | Rasch Model Parameters by Pairwise Algorithm |

2014-05-29 | SSN | Spatial Modeling on Stream Networks |

2014-05-29 | stargazer | LaTeX/HTML code and ASCII text for well-formatted regression and summary statistics tables |

2014-05-29 | taRifx | Collection of utility and convenience functions |

2014-05-28 | dostats | Compute statistics helper functions |

2014-05-28 | gtools | Various R programming tools |

2014-05-28 | harvestr | A Parallel Simulation Framework |

2014-05-28 | ivlewbel | Uses heteroscedasticity to estimate mismeasured and endogenous regressor models |

2014-05-28 | mixexp | Design and analysis of mixture experiments |

2014-05-28 | ordBTL | Modelling comparison data with ordinal response |

2014-05-28 | SAVE | Bayesian emulation, calibration and validation of computer models |

2014-05-28 | SciencesPo | Tools for analyzing political behaviour data |

2014-05-28 | seg | A set of tools for measuring spatial segregation |

2014-05-28 | SINGLE | Estimate sparse dynamic graphs using the Smooth Incremental Graphical Lasso Estimation (SINGLE) algorithm |

2014-05-28 | VGAM | Vector Generalized Linear and Additive Models |

2014-05-28 | VGAMdata | Data supporting the VGAM package |

2014-05-27 | bbmle | Tools for general maximum likelihood estimation |

2014-05-27 | bmmix | Bayesian multinomial mixture |

2014-05-27 | bootLR | Bootstrapped confidence intervals for (negative) likelihood ratio tests |

2014-05-27 | capm | Companion Animal Population Management |

2014-05-27 | DiceEval | Construction and evaluation of metamodels |

2014-05-27 | frm | Regression analysis of fractional responses |

2014-05-27 | gems | Generalized multistate simulation model |

2014-05-27 | GPLTR | Generalized Partially Linear Tree-based Regression Model |

2014-05-27 | metagen | Inference in Meta Analysis and Meta Regression |

2014-05-27 | micromap | Linked Micromap Plots |

2014-05-27 | PHeval | Evaluation of the proportional hazards assumption with a standardized score process |

2014-05-27 | PopED | Population (and individual) optimal Experimental Design |

2014-05-27 | timereg | Flexible regression models for survival data |

2014-05-26 | biotools | Tools for Biometry and Applied Statistics in Agricultural Science |

2014-05-26 | constrainedKriging | Constrained, covariance-matching constrained and universal point or block kriging |

2014-05-26 | DDD | Diversity-dependent diversification |

2014-05-26 | NHPoisson | Modelling and validation of non homogeneous Poisson processes |

2014-05-26 | PBD | Protracted birth-death model of diversification |

2014-05-26 | pbdPROF | Programming with Big Data — MPI Profiling Tools |

2014-05-26 | plotrix | Various plotting functions |

2014-05-26 | rugarch | Univariate GARCH models |

2014-05-26 | SRRS | The Stepwise Response Refinement Screener (SRRS) |

2014-05-25 | prettyR | Pretty descriptive stats |

2014-05-24 | bigGP | Distributed Gaussian process calculations |

2014-05-24 | EMMREML | Fitting mixed models with known covariance structures |

2014-05-24 | faoutlier | Influential case detection methods for factor analysis and SEM |

2014-05-24 | glmnet | Lasso and elastic-net regularized generalized linear models |

2014-05-24 | RSocrata | Download Socrata datasets as R data frames |

2014-05-23 | alphashape3d | Implementation of the 3D alpha-shape for the reconstruction of 3D sets from a point cloud |

2014-05-23 | blockTools | Block, assign, and diagnose potential interference in randomized experiments |

2014-05-23 | ExtremeBounds | Extreme Bounds Analysis (EBA) |

2014-05-23 | fda | Functional Data Analysis |

2014-05-23 | hyperSpec | Interface for hyperspectral data, i.e. spectra + meta info (spatial, time, concentration, ...) |

2014-05-23 | lazyWeave | LaTeX Wrappers for R Users |

2014-05-23 | Modalclust | Hierarchical Modal Clustering |

2014-05-23 | OrgMassSpecR | Organic Mass Spectrometry |

2014-05-23 | rpart.utils | Tools for parsing and manipulating rpart objects, including generating machine readable rules |

2014-05-23 | RSNNS | Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS) |

2014-05-23 | tsbridge | Calculate normalising constants for Bayesian time series models |

2014-05-23 | ucbthesis | UC Berkeley graduate division thesis template |

2014-05-22 | BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |

2014-05-22 | GCD | Global Charcoal Database |

2014-05-22 | geotopbricks | geotopbricks |

2014-05-22 | nmcdr | Non-parametric Multiple Change-points Detection |

2014-05-22 | paleofire | paleofire: an R package to analyse sedimentary charcoal records from the Global Charcoal Database to reconstruct past biomass burning |

2014-05-22 | qgraph | Network-based data visualization |

2014-05-22 | Storm | Write Storm Bolts in R using the Storm Multi-Language Protocol |

2014-05-22 | treecm | Centre of mass assessment and consolidation of trees |

2014-05-21 | autoencoder | An implementation of sparse autoencoder for automatic learning of representative features from unlabeled data |

2014-05-21 | clues | Clustering Method Based on Local Shrinking |

2014-05-21 | ggplot2 | An implementation of the Grammar of Graphics |

2014-05-21 | KRLS | Kernel-based Regularized Least squares (KRLS) |

2014-05-21 | monomvn | Estimation for multivariate normal and Student-t data with monotone missingness |

2014-05-21 | Rmpi | Interface (Wrapper) to MPI (Message-Passing Interface) |

2014-05-21 | spatial.gev.bma | Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA) |

2014-05-21 | sybilSBML | SBML Integration in Package sybil |

2014-05-21 | Wats | Wrap Around Time Series graphics |

2014-05-20 | prefmod | Utilities to fit paired comparison models for preferences |

2014-05-20 | ResourceSelection | Resource Selection (Probability) Functions for Use-Availability Data |

2014-05-20 | xpose4 | Xpose 4 |

2014-05-19 | cubfits | Codon Usage Bias Fits |

2014-05-19 | FLIM | Farewell’s Linear Increments Model |

2014-05-19 | ggm | A package for Graphical Markov Models |

2014-05-19 | GRTo | Tools for the analysis of Gutenberg-Richter distributions of earthquake magnitudes |

2014-05-19 | gset | Group Sequential Design in Equivalence Studies |

2014-05-19 | hawkes | Hawkes process simulation and calibration toolkit |

2014-05-19 | letsR | Tools for data handling and analysis in macroecology |

2014-05-19 | MASSTIMATE | Body Mass Estimation Equations for Vertebrates |

2014-05-19 | oce | Analysis of Oceanographic data |

2014-05-19 | ODMconverter | tools to convert ODM files |

2014-05-19 | PVAClone | Population Viability Analysis with Data Cloning |

2014-05-19 | qlcMatrix | Utility sparse matrix functions for Quantitative Language Comparison |

2014-05-19 | sharx | Models and Data Sets for the Study of Species-Area Relationships |

2014-05-19 | sse | Sample size estimation |

2014-05-18 | cladoRcpp | C++ implementations of phylogenetic cladogenesis calculations |

2014-05-18 | cstar | Substantive significance testing for regression estimates and marginal effects |

2014-05-18 | Hankel | Univariate non-parametric two-sample test based on empirical Hankel transforms |

2014-05-18 | isingLenzMC | Monte Carlo for classical Ising Model |

2014-05-18 | MC2toPath | Translates information from netcdf files with MC2 output into inter-PVT transitions |

2014-05-18 | R4CDISC | Read CDISC data files |

2014-05-18 | robust | Robust Library |

2014-05-17 | boostr | A modular framework to bag or boost any estimation procedure |

2014-05-17 | entropart | Entropy partitioning to measure diversity |

2014-05-17 | gambin | Fit the GamBin model to species abundance distributions |

2014-05-17 | mailR | A utility to send emails from R |

2014-05-17 | micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |

2014-05-17 | pmr | Probability Models for Ranking Data |

2014-05-17 | VNM | Multiple objective optimal design |

2014-05-16 | bigrf | Big Random Forests: Classification and Regression Forests for Large Data Sets |

2014-05-16 | detect | Analyzing Wildlife Data with Detection Error |

2014-05-16 | dynia | Fit Dynamic Intervention Model |

2014-05-16 | FGN | Fractional Gaussian Noise and power law decay time series model fitting |

2014-05-16 | fields | Tools for spatial data |

2014-05-16 | geiger | Analysis of evolutionary diversification |

2014-05-16 | mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |

2014-05-16 | mvctm | Multivariate Variance Components Tests for Multilevel Data |

2014-05-16 | pbapply | Adding Progress Bar to '*apply' Functions |

2014-05-16 | PBSddesolve | Solver for Delay Differential Equations |

2014-05-16 | QRM | Provides R-language Code to Examine Quantitative Risk Management Concepts |

2014-05-16 | rspa | Adapt numerical records to fit (in)equality restrictions with the Successive Projection Algorithm |

2014-05-16 | Skillings.Mack | The Skillings-Mack test Statistic for block designs with missing observations |

2014-05-16 | stringi | Character string processing facilities |

2014-05-15 | BiodiversityR | GUI for biodiversity, suitability and community ecology analysis |

2014-05-15 | DoubleExpSeq | Differential Exon Usage Test for RNA-Seq data via Empirical Bayes Shrinkage of the Dispersion Parameter |

2014-05-15 | equateIRT | Direct, chain and average equating coefficients with standard errors using IRT methods |

2014-05-15 | magrittr | magrittr - a forward-pipe operator for R |

2014-05-15 | monitoR | Acoustic template detection in R |

2014-05-15 | SimRAD | Simulations to predict the number of loci expected in RAD and GBS approaches |

2014-05-15 | wq | Exploring water quality monitoring data |

2014-05-14 | ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |

2014-05-14 | erpR | Event-related potentials (ERP) analysis, graphics and utility functions |

2014-05-14 | hydroApps | Tools and models for hydrological applications |

2014-05-14 | imputeR | A General Imputation Framework in R |

2014-05-14 | LogisticDx | Diagnostic tests for logistic regression models |

2014-05-14 | mixtools | Tools for analyzing finite mixture models |

2014-05-14 | phyloTop | Phylogenetic Tree Topological Properties Evaluator |

2014-05-14 | pkgmaker | Package development utilities |

2014-05-14 | rvHPDT | Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees |

2014-05-14 | shp2graph | Convert a SpatialLinesDataFrame object to a "igraph-class" object |

2014-05-14 | tdm | A Tool for Therapeutic Drug Monitoring (TDM) |

2014-05-13 | adegenet | adegenet: an R package for the exploratory analysis of genetic and genomic data |

2014-05-13 | cutoffR | CUTOFF: A Spatio-temporal Imputation Method |

2014-05-13 | dbmss | Distance-based measures of spatial structures |

2014-05-13 | dynatopmodel | Implementation of the Dynamic TOPMODEL hydrological model |

2014-05-13 | emdatr | Global Disaster Losses from the EMDAT database Using R |

2014-05-13 | mets | Analysis of Multivariate Event Times |

2014-05-13 | nplr | N-Parameter Logistic Regression |

2014-05-13 | OptimalCutpoints | Computing optimal cutpoints in diagnostic tests |

2014-05-13 | PCPS | PCPS - Principal Coordinates of Phylogenetic Structure |

2014-05-13 | samplingEstimates | Sampling Estimates |

2014-05-13 | samplingVarEst | Sampling Variance Estimation |

2014-05-13 | SpatialVx | Spatial Forecast Verification |

2014-05-13 | survMisc | Miscellaneous functions for survival data |

2014-05-13 | turfR | TURF Analysis for R |

2014-05-12 | CORElearn | Classification, regression, feature evaluation and ordinal evaluation |

2014-05-12 | dti | Analysis of diffusion weighted imaging (DWI) data |

2014-05-12 | finiteruinprob | Computation of the probability of ruin within a finite time horizon |

2014-05-12 | GWmodel | Geographically weighted models |

2014-05-12 | stilt | Separable Gaussian Process Interpolation (Emulation) |

2014-05-12 | VSURF | Variable Selection Using Random Forests |

2014-05-11 | BerlinData | Easy access to Berlin related data |

2014-05-11 | siplab | Spatial individual-plant modelling |

2014-05-11 | TFMPvalue | Efficient and accurate P-value computation for Position Weight Matrices |

2014-05-11 | vines | Multivariate Dependence Modeling with Vines |

2014-05-10 | hpoPlot | Functions to plot graphviz style graphs of sets of HPO terms |

2014-05-10 | recalls | Access U.S. Federal Government Recall Data |

2014-05-10 | rmatio | Read and write matlab files |

2014-05-10 | RPublica | ProPublica API Client |

2014-05-10 | rSCA | An R Package for Stepwise Cluster Analysis |

2014-05-09 | akmeans | Adaptive Kmeans algorithm based on threshold |

2014-05-09 | blowtorch | Constrained optimization via stochastic gradient descent |

2014-05-09 | DiceDesign | Designs of Computer Experiments |

2014-05-09 | lgcp | Log-Gaussian Cox Process |

2014-05-09 | msap | Statistical analysis for Methylation-sensitive Amplification Polymorphism data |

2014-05-08 | adaptivetau | Tau-leaping stochastic simulation |

2014-05-08 | BayesGESM | Bayesian Analysis of Generalized Elliptical Semiparametric Models |

2014-05-08 | fishMod | Fits Poisson-sum-of-Gammas GLMs, Tweedie GLMs, and delta log-normal mdoels |

2014-05-08 | gendata | Generate and modify synthetic datasets |

2014-05-08 | iRepro | Reproducibility for Interval-Censored Data |

2014-05-08 | outbreaker | Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data |

2014-05-08 | PPtree | Projection pursuit classification tree |

2014-05-08 | ProfessR | Grades Setting and Exam Maker |

2014-05-08 | psgp | Projected Spatial Gaussian Process (psgp) methods |

2014-05-08 | rbundler | Rbundler manages an application's dependencies systematically and repeatedly |

2014-05-08 | Rwave | Time-Frequency analysis of 1-D signals |

2014-05-08 | sensR | Thurstonian models for sensory discrimination |

2014-05-08 | slfm | Tools for fitting sparse latent factor model |

2014-05-07 | bda | Density Estimation for Binned/Weighted Data |

2014-05-07 | bdvis | Biodiversity Data Visualizations |

2014-05-07 | BlakerCI | Blaker's binomial confidence limits |

2014-05-07 | broman | Karl Broman's R code |

2014-05-07 | CALIBERrfimpute | Multiple imputation using MICE and Random Forest |

2014-05-07 | cancerTiming | Estimation of temporal ordering of cancer abnormalities |

2014-05-07 | CollocInfer | Collocation Inference for Dynamic Systems |

2014-05-07 | Dominance | ADI (average dominance index), social network graphs with dual directions, and music notation graph |

2014-05-07 | freestats | Statistical algorithms used in common data mining course |

2014-05-07 | futile.matrix | Random matrix generation and manipulation |

2014-05-07 | genSurv | Generating multi-state survival data |

2014-05-07 | glm2 | Fitting Generalized Linear Models |

2014-05-07 | gplm | Generalized partial linear models (GPLM) |

2014-05-07 | lava | Linear Latent Variable Models |

2014-05-07 | MAMS | Designing Multi-Arm Multi-Stage Studies |

2014-05-07 | metap | Meta-analysis of significance values |

2014-05-07 | noncensus | U.S. Census Regional and Demographic Data |

2014-05-07 | ocedata | Oceanographic datasets for Oce |

2014-05-07 | PCGSE | Principal Component Gene Set Enrichment |

2014-05-07 | RDS | Respondent-Driven Sampling |

2014-05-07 | RObsDat | Store your observations: R-Interface to the Observations Data Model from QUASHI |

2014-05-07 | seqminer | Efficiently Read Sequence Data (VCF format, BCF format and METAL format) into R |

2014-05-07 | tawny | Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators |

2014-05-06 | bandit | Functions for simple A/B split test and multi-armed bandit analysis |

2014-05-06 | cooccur | Probabilistic Species Co-occurrence Analysis in R |

2014-05-06 | FLR | Fuzzy Logic Rule Classifier |

2014-05-06 | HHG | Heller-Heller-Gorfine Tests of Independence |

2014-05-06 | KappaV | Calculates "vectorial Kappa", an index of congruence between patchy mosaics |

2014-05-06 | networkreporting | Tools for using network reporting estimators |

2014-05-06 | RcmdrPlugin.MPAStats | R Commander Plug-in for MPA Statistics |

2014-05-06 | sharpshootR | A collection of functions to support soil survey |

2014-05-06 | tawny.types | Common types for tawny |

2014-05-06 | VBmix | Variational Bayesian mixture models |

2014-05-05 | dams | Dams in the United States from the National Inventory of Dams (NID) |

2014-05-05 | GUTS | GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model |

2014-05-05 | MCMC.OTU | Bayesian analysis of multivariate counts data |

2014-05-05 | nlmrt | Functions for nonlinear least squares solutions |

2014-05-05 | polyclip | Polygon Clipping |

2014-05-05 | REdaS | Companion Package to the Book “R: Einführung durch angewandte Statistik” |

2014-05-05 | truncSP | Semi-parametric estimators of truncated regression models |

2014-05-05 | wtcrsk | Competing risks regression models with covariate-adjusted censoring weight |

2014-05-04 | endorse | R Package for Analyzing Endorsement Experiments |

2014-05-04 | hydrogeo | Groundwater data presentation and interpretation |

2014-05-03 | aqp | Algorithms for Quantitative Pedology |

2014-05-03 | OrdinalLogisticBiplot | Biplot representations of ordinal variables |

2014-05-03 | sglr | An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test |

2014-05-03 | spatialprobit | Spatial Probit Models |

2014-05-02 | BalancedSampling | Balanced and spatially balanced sampling |

2014-05-02 | benchmark | Benchmark Experiments Toolbox |

2014-05-02 | GeneFeST | Bayesian calculation of gene-specific FST from genomic SNP data |

2014-05-02 | HK80 | Conversion Tools for HK80 Geographical Coordinate System |

2014-05-02 | irtProb | Utilities and Probability Distributions Related to Multidimensional Person Item Response Models |

2014-05-02 | NominalLogisticBiplot | Biplot representations of categorical data |

2014-05-02 | NPCD | Nonparametric Methods for Cognitive Diagnosis |

2014-05-02 | rcppbugs | R binding for cppbugs |

2014-05-02 | RcppSMC | Rcpp bindings for Sequential Monte Carlo |

2014-05-02 | sqlutils | Utilities for working with SQL files |

2014-05-01 | benford.analysis | Benford Analysis for data validation and forensic analytics |

2014-05-01 | dynsurv | Dynamic models for survival data |

2014-05-01 | JM | Joint Modeling of Longitudinal and Survival Data |

2014-05-01 | lifecontingencies | A package to perform actuarial mathematics for life contingencies insurances |

2014-05-01 | lqmm | Linear Quantile Mixed Models |

2014-05-01 | MultiCNVDetect | Multiple Copy Number Variation Detection |

2014-05-01 | nplplot | Plotting linkage and association results |

2014-05-01 | ocean | Biophysical Oceanography Tools |

2014-05-01 | PTE | Personalized Treatment Evaluator |

2014-05-01 | robustbase | Basic Robust Statistics |

2014-04-30 | bpcp | Beta Product Confidence Procedure for Right Censored Data |

2014-04-30 | CMPControl | Control Charts for Conway-Maxwell-Poisson Distribution |

2014-04-30 | DAAG | Data Analysis And Graphics data and functions |

2014-04-30 | Deducer | Deducer: A data analysis GUI for R |

2014-04-30 | lar | History of labour relations package |

2014-04-30 | midasr | Mixed Data Sampling Regression |

2014-04-30 | PBC | Product of Bivariate Copulas (PBC) |

2014-04-30 | pdfCluster | Cluster analysis via nonparametric density estimation |

2014-04-30 | RgoogleMaps | Overlays on Google map tiles in R |

2014-04-30 | robustHD | Robust methods for high-dimensional data |

2014-04-30 | soilDB | Soil Database Interface |

2014-04-30 | SoilR | Models of Soil Organic Matter Decomposition |

2014-04-29 | bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |

2014-04-29 | BayesLCA | Bayesian Latent Class Analysis |

2014-04-29 | BayesPen | Bayesian Penalized Credible Regions |

2014-04-29 | bbefkr | Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density |

2014-04-29 | diveRsity | diveRsity: Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In |

2014-04-29 | evaluate | Parsing and evaluation tools that provide more details than the default |

2014-04-29 | fastclime | A fast solver for parameterized lp problems and constrained l1 minimization approach to sparse precision matrix estimation |

2014-04-29 | hierNet | A Lasso for Hierarchical Interactions |

2014-04-29 | MBA | Multilevel B-spline Approximation |

2014-04-29 | mpoly | Symbolic computation and more with multivariate polynomials |

2014-04-29 | RMAWGEN | RMAWGEN (R Multi-site Auto-regressive Weather GENerator), a package to generate daily time series of precipitation and temperature from monthly mean values |

2014-04-29 | uniReg | Unimodal penalized spline regression using B-splines |

2014-04-28 | EasyMARK | Utility functions for working with mark-recapture data |

2014-04-28 | GGEBiplotGUI | GGEBiplotGUI: Interactive GGE Biplots in R |

2014-04-28 | maSAE | Mandallaz' model-assisted small area estimators |

2014-04-28 | mcheatmaps | Multiple matrices heatmap visualization |

2014-04-28 | pxR | PC-Axis with R |

2014-04-28 | TcGSA | Time-course Gene Set Analysis |

2014-04-28 | tvm | Time Value of Money Functions |

2014-04-28 | unmarked | Models for Data from Unmarked Animals |

2014-04-27 | bootstrap | Functions for the Book "An Introduction to the Bootstrap" |

2014-04-27 | mdatools | Multivariate data analysis for chemometrics |

2014-04-27 | MGLM | Multivariate Response Generalized Linear Models |

2014-04-27 | plusser | A Google+ Interface for R |

2014-04-27 | QCA3 | Yet another package for Qualitative Comparative Analysis |

2014-04-27 | solaR | Solar Photovoltaic Systems |

2014-04-26 | coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |

2014-04-26 | geeM | Fit Generalized Estimating Equations |

2014-04-26 | HistData | Data sets from the history of statistics and data visualization |

2014-04-26 | Rpdb | Read, write, visualize and manipulate PDB files |

2014-04-26 | RWeka | R/Weka interface |

2014-04-25 | adehabitat | Analysis of habitat selection by animals |

2014-04-25 | chemCal | Calibration functions for analytical chemistry |

2014-04-25 | crossval | Generic Functions for Cross Validation |

2014-04-25 | DandEFA | Dandelion Plot for R-mode Exploratory Factor Analysis |

2014-04-25 | dplR | Dendrochronology Program Library in R |

2014-04-25 | DynClust | Denoising and clustering for dynamical image sequence (2D or 3D)+T |

2014-04-25 | flux | Flux rate calculation from dynamic closed chamber measurements |

2014-04-25 | ICEbox | Individual Conditional Expectation Plot Toolbox |

2014-04-25 | move | Visualizing and analyzing animal track data |

2014-04-25 | optiRum | Miscellaneous functions for finance / credit risk analysts |

2014-04-25 | predfinitepop | Predictive Inference on Totals and Averages of Finite Populations Segmented in Planned and Unplanned Domains |

2014-04-25 | RSvgDevice | An R SVG graphics device |

2014-04-24 | binhf | Haar-Fisz functions for binomial data |

2014-04-24 | clusterfly | Explore clustering interactively using R and GGobi |

2014-04-24 | EvCombR | Evidence Combination in R |

2014-04-24 | falcon | Finding Allele-specific Copy Number in Next-Generation Sequencing Data |

2014-04-24 | MIICD | Multiple Imputation for interval censored data regression |

2014-04-24 | MILC | MIcrosimulation Lung Cancer (MILC) model |

2014-04-24 | mvMORPH | Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data |

2014-04-24 | polywog | Bootstrapped Basis Regression with Oracle Model Selection |

2014-04-24 | Rgbp | Gaussian, Poisson, and Binomial Hierarchical Modeling |

2014-04-24 | rggobi | Interface between R and GGobi |

2014-04-24 | rpubchem | rpubchem - Interface to the PubChem Collection |

2014-04-24 | sand | Statistical Analysis of Network Data with R |

2014-04-24 | SPODT | Spatial Oblique Decision Tree |

2014-04-24 | SurvRegCensCov | Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate |

2014-04-23 | classifly | Explore classification models in high dimensions |

2014-04-23 | meifly | Interactive model exploration using GGobi |

2014-04-23 | micEconCES | Analysis with the Constant Elasticity of Substitution (CES) function |

2014-04-23 | NormalLaplace | The Normal Laplace Distribution |

2014-04-23 | packHV | A few useful functions for statisticians |

2014-04-23 | phenability | Nonparametric Stability Analysis |

2014-04-23 | reshape | Flexibly reshape data |

2014-04-23 | reshape2 | Flexibly reshape data: a reboot of the reshape package |

2014-04-23 | Rothermel | Rothermel fire spread model for R |

2014-04-23 | SNPassoc | SNPs-based whole genome association studies |

2014-04-23 | tourr | Implement tour methods in pure R code |

2014-04-22 | ads | Spatial point patterns analysis |

2014-04-22 | apmsWAPP | Pre- and Postprocessing for AP-MS data analysis based on spectral counts |

2014-04-22 | Bchron | Radiocarbon dating, age-depth modelling, relative sea level rate estimation, and non-parametric phase modelling |

2014-04-22 | bear | Average bioequivalence and bioavailability data analysis tool |

2014-04-22 | crackR | Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures |

2014-04-22 | DIFlasso | A penalty approach to Differential Item Functioning in Rasch Models |

2014-04-22 | dynamicTreeCut | Methods for detection of clusters in hierarchical clustering dendrograms |

2014-04-22 | FDboost | Boosting functional regression models |

2014-04-22 | ggthemes | Extra themes, scales and geoms for ggplot |

2014-04-22 | igraph | Network analysis and visualization |

2014-04-22 | IQCC | Improved Quality Control Charts |

2014-04-22 | kcirt | k-Cube Thurstonian IRT Models |

2014-04-22 | ltmle | Longitudinal Targeted Maximum Likelihood Estimation |

2014-04-22 | memoise | Memoise functions |

2014-04-22 | micEcon | Microeconomic Analysis and Modelling |

2014-04-22 | micEconSNQP | Symmetric Normalized Quadratic Profit Function |

2014-04-22 | opm | Analysing Phenotype Microarray and Growth Curve Data |

2014-04-22 | polyapost | Simulating from the Polya posterior |

2014-04-22 | profr | An alternative display for profiling information |

2014-04-22 | quipu | Summary charts of micro satellite profiles for a set of biological samples |

2014-04-22 | R2MLwiN | Running MLwiN from within R |

2014-04-22 | R2STATS | A GTK GUI for fitting and comparing GLM and GLMM in R |

2014-04-22 | scales | Scale functions for graphics |

2014-04-22 | sqlshare | API for access to SQLShare database |

2014-04-22 | userfriendlyscience | Quantitative analysis made accessible |

2014-04-22 | VineCopula | Statistical inference of vine copulas |

2014-04-21 | GSAgm | Gene Set Analysis using the Gamma Method |

2014-04-21 | LaF | Fast access to large ASCII files |

2014-04-20 | kolmim | An improved evaluation of Kolmogorov's distribution |

2014-04-19 | openNLP | Apache OpenNLP Tools Interface |

2014-04-19 | RApiSerialize | R API Serialization |

2014-04-19 | Reol | R interface to the Encyclopedia of Life |

2014-04-19 | RTextureMetrics | Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices |

2014-04-19 | rWBclimate | A package for accessing World Bank climate data |

2014-04-18 | AnthropMMD | A GUI for Mean Measures of Divergence |

2014-04-18 | bayesQR | Bayesian quantile regression |

2014-04-18 | Bclim | Bayesian Palaeoclimate Reconstruction from Pollen |

2014-04-18 | regRSM | Random Subspace Method (RSM) for linear regression |

2014-04-18 | SEERaBomb | SEER Setup and Use with A-Bomb Data |

2014-04-18 | st | Shrinkage t Statistic and CAT Score |

2014-04-17 | ATmet | Advanced Tools for Metrology |

2014-04-17 | ModelMap | Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps |

2014-04-17 | MSQC | Multivariate Statistical Quality Control |

2014-04-17 | poisson.glm.mix | Fit high dimensional mixtures of Poisson GLMs |

2014-04-16 | AFLPsim | Hybrid simulation and genome scan for dominant markers |

2014-04-16 | bigalgebra | BLAS routines for native R matrices and big.matrix objects |

2014-04-16 | fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |

2014-04-16 | GEVcdn | GEV conditional density estimation network |

2014-04-16 | greport | Graphical Reporting for Clinical Trials |

2014-04-16 | mizer | Multi-species sIZE spectrum modelling in R |

2014-04-16 | PropCIs | Various confidence interval methods for proportions |

2014-04-16 | psd | Adaptive, sine-multitaper power spectral density estimation |

2014-04-16 | Rdpack | Update and manipulate Rd documentation objects |

2014-04-16 | scidb | An R interface to SciDB |

2014-04-16 | simboot | Simultaneous inference for diversity indices |

2014-04-15 | Blaunet | Calculate and Analyze Blau statuses for measuring social distance |

2014-04-15 | ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |

2014-04-15 | HiLMM | Estimation of heritability in high dimensional Linear Mixed Models |

2014-04-15 | Johnson | Johnson Transformation |

2014-04-15 | mapStats | Geographic display of survey data statistics |

2014-04-15 | MPCI | Multivariate Process Capability Indices (MPCI) |

2014-04-15 | NBPSeq | Negative Binomial Models for RNA-Sequencing Data |

2014-04-15 | RGIFT | Create quizzes in GIFT Format |

2014-04-15 | scar | Shape-Constrained Additive Regression: a Maximum Likelihood Approach |

2014-04-15 | scio | Sparse Column-wise Inverse Operator |

2014-04-14 | AMORE | A MORE flexible neural network package |

2014-04-14 | binda | Multi-Class Discriminant Analysis using Binary Predictors |

2014-04-14 | DivE | Diversity Estimator |

2014-04-14 | LOGICOIL | LOGICOIL: multi-state prediction of coiled-coil oligomeric state |

2014-04-14 | longitudinal | Analysis of Multiple Time Course Data |

2014-04-14 | multiPIM | Variable Importance Analysis with Population Intervention Models |

2014-04-14 | pumilioR | Pumilio in R |

2014-04-14 | QuasiSeq | Analyzing RNA sequence count tables using quasi-likelihood |

2014-04-14 | soundecology | Soundscape ecology |

2014-04-13 | aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |

2014-04-13 | compound.Cox | Regression estimation based on the compound covariate method under the Cox proportional hazard model |

2014-04-13 | FGSG | Feature grouping and selection over an undirected graph |

2014-04-13 | hydroPSO | Particle Swarm Optimisation, with focus on Environmental Models |

2014-04-13 | MCMC.qpcr | Bayesian analysis of qRT-PCR data |

2014-04-13 | RcppBDT | Rcpp bindings for the Boost Date_Time library |

2014-04-13 | SensoMineR | Sensory data analysis with R |

2014-04-12 | BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |

2014-04-12 | earlywarnings | Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries |

2014-04-12 | fastM | Fast Computation of Multivariate M-estimators |

2014-04-12 | Rcsdp | R interface to the CSDP semidefinite programming library |

2014-04-11 | extWeibQuant | Estimate the lower extreme quantile with the censored Weibull MLE and censored Weibull Mixture |

2014-04-11 | foreach | Foreach looping construct for R |

2014-04-11 | gRapfa | Acyclic Probabilistic Finite Automata |

2014-04-11 | iterators | Iterator construct for R |

2014-04-11 | rvTDT | population control weighted rare-variants TDT |

2014-04-11 | sequences | Generic and biological sequences |

2014-04-10 | archetypes | Archetypal Analysis |

2014-04-10 | CatDyn | Fishery Stock Assessment by Catch Dynamic Models |

2014-04-10 | dataview | Human readable data presentation |

2014-04-10 | gam | Generalized Additive Models |

2014-04-10 | gridSVG | Export grid graphics as SVG |

2014-04-10 | grt | General Recognition Theory |

2014-04-10 | ora | Convenient Tools for Working with Oracle Databases |

2014-04-10 | orca | Orca: Counting graphlet orbits in sparse graphs |

2014-04-10 | PSMix | Population structure inference using mixture model |

2014-04-10 | RcppCNPy | Rcpp bindings for NumPy files |

2014-04-10 | toaster | analytics and visualization with Aster Database |

2014-04-09 | bit | A class for vectors of 1-bit booleans |

2014-04-09 | bit64 | A S3 class for vectors of 64bit integers |

2014-04-09 | cuttlefish.model | An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model |

2014-04-09 | drmdel | Dual empirical likelihood inference under density ratio models in the presence of multiple samples |

2014-04-09 | ff | memory-efficient storage of large data on disk and fast access functions |

2014-04-09 | GHQp | Gauss Hermite Quadrature with pruning |

2014-04-09 | metaLik | Likelihood inference in meta-analysis and meta-regression models |

2014-04-09 | PBSadmb | ADMB for R Using Scripts or GUI |

2014-04-09 | Quandl | Quandl Data Connection |

2014-04-09 | sp | classes and methods for spatial data |

2014-04-09 | spsmooth | spsmooth: An Extension Package for 'mgcv' |

2014-04-09 | ThreeWay | Three-way component analysis |

2014-04-09 | TSjson | TSdbi extension for importing time series from web sources via JSON |

2014-04-08 | bcrm | Bayesian continual reassessment method (CRM) designs for Phase I dose-finding trials |

2014-04-08 | coxphw | Weighted Estimation in Cox Regression |

2014-04-08 | EWGoF | Goodness-of-fit tests for the Exponential and two-parameter Weibull distributions |

2014-04-08 | rTensor | Tools for tensor analysis and decomposition |

2014-04-08 | smoothHR | Smooth Hazard Ratio Curves taking a Reference Value |

2014-04-08 | spectral.methods | Singular Spectrum Analysis (SSA) tools for time series analysis |

2014-04-08 | TSsql | Generic SQL helper functions for TSdbi SQL plugins |

2014-04-07 | confreq | Configural Frequencies Analysis Using Loglinear Modeling |

2014-04-07 | disclap | Discrete Laplace Exponential Family |

2014-04-07 | MMS | Fixed effects Selection in Linear Mixed Models |

2014-04-07 | ncdf.tools | Easier ncdf file handling |

2014-04-07 | NPS | Convenience functions and tests for working with the Net Promoter Score (NPS) |

2014-04-07 | PBSmodelling | GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations |

2014-04-07 | rotations | Tools for Working with Rotation Data |

2014-04-07 | sotkanet | Sotkanet R Tools |

2014-04-07 | tuneR | Analysis of music and speech |

2014-04-06 | gdata | Various R programming tools for data manipulation |

2014-04-05 | acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |

2014-04-05 | argparse | Command line optional and positional argument parser |

2014-04-05 | bbemkr | Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |

2014-04-05 | isotonic.pen | Penalized Isotonic Regression in one and two dimensions |

2014-04-05 | nonrandom | Stratification and matching by the propensity score |

2014-04-05 | PBSmapping | Mapping Fisheries Data and Spatial Analysis Tools |

2014-04-05 | seacarb | seawater carbonate chemistry with R |

2014-04-04 | aRpsDCA | Arps Decline Curve Analysis in R |

2014-04-04 | CARBayes | Spatial areal unit modelling |

2014-04-04 | EasyABC | EasyABC: performing efficient approximate Bayesian computation sampling schemes |

2014-04-04 | EcoHydRology | A community modeling foundation for Eco-Hydrology |

2014-04-04 | ERP | Significance analysis of Event-Related Potentials data |

2014-04-04 | fts | R interface to tslib (a time series library in c++) |

2014-04-04 | lattice | Lattice Graphics |

2014-04-04 | mombf | Moment and Inverse Moment Bayes factors |

2014-04-04 | neuroim | neuroim: R software for reading, writing and representing brain imaging data |

2014-04-04 | optparse | Command line option parser |

2014-04-04 | palinsol | Insolation for palaeoclimate studies |

2014-04-04 | signal | Signal processing |

2014-04-03 | climdex.pcic | PCIC implementation of Climdex routines |

2014-04-03 | csampling | Functions for Conditional Simulation in Regression-Scale Models |

2014-04-03 | doRedis | Foreach parallel adapter for the rredis package |

2014-04-03 | findpython | Python tools to find an acceptable python binary |

2014-04-03 | JBTools | JBs tools and helper functions |

2014-04-03 | marg | Approximate marginal inference for regression-scale models |

2014-04-03 | Methplot | Visualize the methylation patterns |

2014-04-03 | nlreg | Higher Order Inference for Nonlinear Heteroscedastic Models |

2014-04-03 | pcg | Preconditioned Conjugate Gradient Algorithm for solving Ax=b |

2014-04-03 | rDVR | The rDVR package allows you to start stop and save a video server from within R |

2014-04-03 | TrackReconstruction | Reconstruct animal tracks from magnetometer, accelerometer, depth and optional speed data |

2014-04-02 | clue | Cluster ensembles |

2014-04-02 | depmix | Dependent Mixture Models |

2014-04-02 | fifer | A collection of miscellaneous functions |

2014-04-02 | gstat | spatial and spatio-temporal geostatistical modelling, prediction and simulation |

2014-04-02 | kimisc | Kirill's miscellaneous functions |

2014-04-02 | lpint | Local polynomial estimators of intensity function or its derivatives |

2014-04-02 | lsa | Latent Semantic Analysis |

2014-04-02 | mcmc | Markov Chain Monte Carlo |

2014-04-02 | OAIHarvester | Harvest Metadata Using OAI-PMH v2.0 |

2014-04-02 | potts | Markov Chain Monte Carlo for Potts Models |

2014-04-02 | rankhazard | Rank-hazard plots |

2014-04-02 | Rchoice | Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters |

2014-04-02 | relations | Data Structures and Algorithms for Relations |

2014-04-02 | Rfacebook | Access to Facebook API via R |

2014-04-02 | skmeans | Spherical k-Means Clustering |

2014-04-02 | slam | Sparse Lightweight Arrays and Matrices |

2014-04-02 | sybilccFBA | Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT) |

2014-04-02 | ump | Uniformly Most Powerful Tests |

2014-04-01 | GenOrd | Simulation of ordinal and discrete variables with given correlation matrix and marginal distributions |

2014-04-01 | paramlink | Parametric linkage analysis in R |

2014-04-01 | tosls | Instrumental Variables Two Stage Least Squares estimation |

2014-03-31 | abd | The Analysis of Biological Data |

2014-03-31 | evdbayes | Bayesian Analysis in Extreme Value Theory |

2014-03-31 | factas | Data Mining Methods for Data Streams |

2014-03-31 | geoscale | Geological timescale plot |

2014-03-31 | r2d2 | Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution |

2014-03-31 | RImageJROI | Read ImageJ Region of Interest (ROI) files |

2014-03-31 | sparsediscrim | Sparse and Regularized Discriminant Analysis |

2014-03-31 | treemap | Treemap visualization |

2014-03-31 | WrightMap | Wright Map: IRT item-person map with ConQuest integration |

2014-03-30 | Ckmeans.1d.dp | Optimal k-means clustering for one-dimensional data |

2014-03-30 | crank | Completing ranks |

2014-03-30 | partsm | Periodic Autoregressive Time Series Models |

2014-03-30 | ptw | Parametric Time Warping |

2014-03-30 | rcdd | rcdd (Computational Geometry) |

2014-03-30 | trust | Trust Region Optimization |

2014-03-30 | TunePareto | Multi-objective parameter tuning for classifiers |

2014-03-28 | aCRM | Convenience functions for analytical Customer Relationship Management |

2014-03-28 | ddalpha | DDalpha-classifier, depth-calculating methods and associated functions |

2014-03-28 | egcm | Engle-Granger cointegration models |

2014-03-28 | EMA | Easy Microarray data Analysis |

2014-03-28 | FacPad | Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment |

2014-03-28 | fanovaGraph | Building Kriging models from FANOVA graphs |

2014-03-28 | FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |

2014-03-28 | foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, .. |

2014-03-28 | GraphPCA | GraphPCA, Graphical tools of histogram PCA |

2014-03-28 | invGauss | Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data |

2014-03-28 | MMMS | Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification |

2014-03-28 | nnet | Feed-forward Neural Networks and Multinomial Log-Linear Models |

2014-03-28 | opmdata | Example data for analysing OmniLog(R) Phenotype Microarray data |

2014-03-28 | pdmod | Proximal/distal modeling framework for Pavlovian conditioning phenomena |

2014-03-28 | pks | Probabilistic Knowledge Structures |

2014-03-28 | polyaAeppli | Implementation of the Polya-Aeppli distribution |

2014-03-28 | rpart | Recursive Partitioning and Regression Trees |

2014-03-28 | simMSM | Simulation of event histories based on nonlinear hazard rate functions and potentially nonlinear covariate effects |

2014-03-28 | spatial | Functions for Kriging and Point Pattern Analysis |

2014-03-27 | biwavelet | Conduct univariate and bivariate wavelet analyses |

2014-03-27 | CDVine | Statistical inference of C- and D-vine copulas |

2014-03-27 | etm | Empirical Transition Matrix |

2014-03-27 | iFad | An integrative factor analysis model for drug-pathway association inference |

2014-03-27 | MetaSKAT | Meta analysis for SNP-set (Sequence) Kernel Association Test |

2014-03-27 | rstudioapi | Safely access the RStudio API |

2014-03-27 | synchronicity | Boost mutex functionality for R |

2014-03-27 | TeachingSampling | Selection of samples and parameter estimation in finite population |

2014-03-27 | wesanderson | A Wes Anderson Palette Generator |

2014-03-26 | fclust | Fuzzy clustering |

2014-03-26 | MPDiR | Data sets and scripts for Modeling Psychophysical Data in R |

2014-03-26 | msgl | High dimensional multiclass classification using sparse group lasso |

2014-03-26 | parfm | Parametric Frailty Models |

2014-03-26 | Rcolombos | Interface to Colombos Compendia using the exposed REST API |

2014-03-26 | Rphylip | An R interface for PHYLIP |

2014-03-26 | SubLasso | Gene selection using Lasso for Microarray data with user-defined genes fixed in model |

2014-03-25 | BayesVarSel | Bayesian Variable selection in Linear Models |

2014-03-25 | bipartite | Visualising bipartite networks and calculating some (ecological) indices |

2014-03-25 | cem | Coarsened Exact Matching |

2014-03-25 | clValid | Validation of Clustering Results |

2014-03-25 | CMF | Collective matrix factorization |

2014-03-25 | Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |

2014-03-25 | GenSA | R functions for Generalized Simulated Annealing |

2014-03-25 | gRain | Graphical Independence Networks |

2014-03-25 | ivfixed | Instrumental fixed effect panel data model |

2014-03-25 | kml3d | K-means for joint Longitudinal data |

2014-03-25 | lsgl | Linear sparse group lasso |

2014-03-25 | mcga | Machine coded genetic algorithms for real-valued optimization problems |

2014-03-25 | RProtoBuf | R Interface to the Protocol Buffers API |

2014-03-24 | ccgarch | Conditional Correlation GARCH models |

2014-03-24 | CCpop | One and two locus GWAS of binary phenotype with case-control-population design |

2014-03-24 | Geneland | Detection of structure from multilocus genetic data |

2014-03-24 | ISOcodes | Selected ISO codes |

2014-03-24 | kml | K-means for Longitudinal data |

2014-03-24 | lmom | L-moments |

2014-03-24 | lsdv | Least square dummy variable regression |

2014-03-24 | ouch | Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses |

2014-03-24 | OutlierDC | Outlier Detection using quantile regression for Censored Data |

2014-03-24 | rFerns | Random ferns classifier |

2014-03-24 | sglOptim | Sparse group lasso generic optimizer |

2014-03-23 | freqparcoord | Novel Methods for Parallel Coordinates |

2014-03-23 | gRbase | A package for graphical modelling in R |

2014-03-23 | hybridEnsemble | Build, deploy and evaluate a Hybrid Ensemble |

2014-03-23 | kernelFactory | Kernel Factory: An ensemble of kernel Machines |

2014-03-23 | OutlierDM | Outlier detection for replicated high-throughput data |

2014-03-22 | BiDimRegression | Calculates the bidimensional regression between two 2D configurations |

2014-03-22 | dna | Differential Network Analysis |

2014-03-22 | fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |

2014-03-22 | HGNChelper | Handy functions for working with HGNC gene symbols and Affymetrix probeset identifiers |

2014-03-22 | kintone | kintone REST client package for R |

2014-03-22 | RND | Risk Neutral Density Extraction Package |

2014-03-22 | Unicode | Unicode data and utilities |

2014-03-21 | caschrono | Séries temporelles avec R - Méthodes et cas |

2014-03-21 | MARSS | Multivariate Autoregressive State-Space Modeling |

2014-03-21 | PwrGSD | Power in a Group Sequential Design |

2014-03-21 | Rmixmod | An interface for MIXMOD |

2014-03-21 | Stack | Stylized concatenation of data.frames or ffdfs |

2014-03-20 | AmpliconDuo | Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Artefacts |

2014-03-20 | deepnet | deep learning toolkit in R |

2014-03-20 | EloRating | Animal Dominance Hierarchies by Elo Rating |

2014-03-20 | formula.tools | Utilities for working with formulas, expressions, calls and other R objects |

2014-03-20 | gIPFrm | Generalized Iterative Proportional Fitting for Relational Models |

2014-03-20 | kaps | K-Adaptive Partitioning for Survival data |

2014-03-20 | koRpus | An R Package for Text Analysis |

2014-03-20 | longitudinalData | Longitudinal Data |

2014-03-20 | MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |

2014-03-20 | Paneldata | Linear models for panel data |

2014-03-20 | phylobase | Base package for phylogenetic structures and comparative data |

2014-03-20 | pspearman | Spearman's rank correlation test |

2014-03-20 | raters | An index of inter-rater agreement among a set of raters |

2014-03-20 | shinyBS | Twitter Bootstrap Components for Shiny |

2014-03-19 | BIPOD | BIPOD (Bayesian Inference for Partially Observed diffusions) |

2014-03-19 | DBFTest | DBF test of no difference between groups |

2014-03-19 | extrafont | Tools for using fonts |

2014-03-19 | fontcm | Computer Modern font for use with extrafont package |

2014-03-19 | geospacom | Helper package to facilitate the generation of distance matrices used in the package spacom |

2014-03-19 | latentnet | Latent position and cluster models for statistical networks |

2014-03-19 | PKreport | A reporting pipeline for checking population pharmacokinetic model assumption |

2014-03-19 | PoisNor | Simultaneous generation of multivariate data with Poisson and normal marginals |

2014-03-19 | randtests | Testing randomness in R |

2014-03-19 | RcmdrPlugin.SCDA | Rcmdr plugin for designing and analyzing single-case experiments |

2014-03-19 | resemble | Regression and similarity evaluation for memory-based learning in spectral chemometrics |

2014-03-18 | brainR | Helper functions to misc3d and rgl packages for brain imaging |

2014-03-18 | comato | Analysis of Concept Maps |

2014-03-18 | DSsim | Distance Sampling Simulations |

2014-03-18 | NMF | Algorithms and framework for Nonnegative Matrix Factorization (NMF) |

2014-03-18 | RSDA | RSDA - R to Symbolic Data Analysis |

2014-03-18 | TPmsm | Estimation of transitions probabilities in multistate models |

2014-03-18 | tractor.base | A package for reading, manipulating and visualising magnetic resonance images |

2014-03-18 | twang | Toolkit for Weighting and Analysis of Nonequivalent Groups |

2014-03-17 | crqa | Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series |

2014-03-17 | date | Functions for handling dates |

2014-03-17 | EBS | Exact Bayesian Segmentation |

2014-03-17 | influence.ME | Tools for detecting influential data in mixed effects models |

2014-03-17 | IPMpack | Builds and analyses Integral Projection Models (IPMs) |

2014-03-17 | Multiclasstesting | Performance of N-ary classification testing |

2014-03-17 | plot3Drgl | Plotting multi-dimensional data - using rgl |

2014-03-17 | polynom | A collection of functions to implement a class for univariate polynomial manipulations |

2014-03-17 | semiArtificial | Generator of semi-artificial data |

2014-03-17 | StatDataML | implementation of the StatDataML proposal |

2014-03-17 | uplift | Uplift Modeling |

2014-03-16 | blme | Bayesian Linear Mixed-Effects Models |

2014-03-16 | darch | Package for deep architectures and Restricted-Bolzmann-Machines |

2014-03-16 | dendextendRcpp | Faster dendrogram manipulation using Rcpp |

2014-03-16 | GEVStableGarch | ARMA-GARCH/APARCH models with GEV and stable distributions |

2014-03-16 | logmult | Log-multiplicative models, including association models |

2014-03-15 | ModelGood | Validation of risk prediction models |

2014-03-15 | plot2groups | Plot scatter points for two groups of values |

2014-03-15 | sbioPN | sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets |

2014-03-15 | ssmrob | Robust estimation and inference in sample selection models |

2014-03-14 | gof | Model-diagnostics based on cumulative residuals |

2014-03-14 | metaRNASeq | Meta-analysis of RNA-seq data |

2014-03-14 | pensim | Simulation of high-dimensional data and parallelized repeated penalized regression |

2014-03-14 | qtlnet | Causal Inference of QTL Networks |

2014-03-14 | rgauges | R wrapper to Gaug.es API |

2014-03-14 | rgpui | UI for the RGP genetic programming framework |

2014-03-14 | solr | General purpose R interface to Solr |

2014-03-14 | ykmeans | K-means using a target variable |

2014-03-13 | doSNOW | Foreach parallel adaptor for the snow package |

2014-03-13 | PharmPow | Pharmacometric Power calculations for mixed study designs |

2014-03-12 | binomlogit | Efficient MCMC for Binomial Logit Models |

2014-03-12 | gmt | Interface between GMT Map-Making Software and R |

2014-03-12 | itertools | Iterator Tools |

2014-03-12 | LIStest | Tests of independence based on the Longest Increasing Subsequence |

2014-03-12 | MVA | An Introduction to Applied Multivariate Analysis with R |

2014-03-12 | normtest | Tests for Normality |

2014-03-12 | plotMCMC | MCMC Diagnostic Plots |

2014-03-12 | reportr | A general message and error reporting system |

2014-03-12 | resample | Resampling functions |

2014-03-12 | scape | Statistical Catch-at-Age Plotting Environment |

2014-03-12 | sparsenet | Fit sparse linear regression models via nonconvex optimization |

2014-03-11 | arulesViz | Visualizing Association Rules and Frequent Itemsets |

2014-03-11 | bayesmix | Bayesian Mixture Models with JAGS |

2014-03-11 | gemtc | GeMTC network meta-analysis |

2014-03-11 | MEMSS | Data sets from Mixed-effects Models in S |

2014-03-11 | mlmRev | Examples from Multilevel Modelling Software Review |

2014-03-11 | performanceEstimation | An infra-structure for performance estimation of predictive models |

2014-03-11 | plsRbeta | Partial least squares Regression for beta regression models |

2014-03-11 | rgexf | An R package to build GEXF graph files |

2014-03-11 | rmaf | Refined Moving Average Filter |

2014-03-11 | SASmixed | Data sets from "SAS System for Mixed Models" |

2014-03-11 | seriation | Infrastructure for seriation |

2014-03-10 | aroma.affymetrix | Analysis of large Affymetrix microarray data sets |

2014-03-10 | cplm | Compound Poisson linear models |

2014-03-10 | DOBAD | Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains |

2014-03-10 | fishmethods | Fishery Science Methods and Models in R |

2014-03-10 | hqmisc | Miscellaneous convenience functions and dataset |

2014-03-10 | hrr | Horizontal rule for the R language |

2014-03-10 | LambertW | Analyze and Gaussianize skewed, heavy-tailed data |

2014-03-10 | metRology | Support for metrological applications |

2014-03-10 | MixMAP | Implements the MixMAP algorithm |

2014-03-10 | pt | Computational models for prospect theory and other theories of risky decision making |

2014-03-10 | relax | relax – R Editor for Literate Analysis and lateX |

2014-03-10 | ss3sim | Fisheries stock assessment simulation testing with Stock Synthesis |

2014-03-10 | XML2R | EasieR XML data collection |

2014-03-09 | BurStFin | Burns Statistics Financial |

2014-03-09 | gpairs | gpairs: The Generalized Pairs Plot |

2014-03-09 | gRapHD | Efficient selection of undirected graphical models for high-dimensional datasets |

2014-03-09 | micromapST | Linked Micromap Plots for U. S. States |

2014-03-09 | regsubseq | Detect and Test Regular Sequences and Subsequences |

2014-03-09 | RQuantLib | R interface to the QuantLib library |

2014-03-09 | SGCS | Spatial Graph based Clustering Summaries for spatial point patterns |

2014-03-09 | spatialsegregation | Segregation measures for multitype spatial point patterns |

2014-03-09 | tmle | Targeted Maximum Likelihood Estimation |

2014-03-08 | adehabitatHR | Home range Estimation |

2014-03-08 | adehabitatHS | Analysis of habitat selection by animals |

2014-03-08 | aroma.core | Core methods and classes used by aroma.* packages part of The Aroma Framework |

2014-03-08 | depend.truncation | Statistical inference for parametric and semiparametric models based on dependently truncated data |

2014-03-08 | EnviroStat | Statistical analysis of environmental space-time processes |

2014-03-08 | ffbase | Basic statistical functions for package ff |

2014-03-08 | FunChisq | Nonparametric functional chi-square tests |

2014-03-08 | gSeg | Graph-Based Change-Point Detection (g-Segmentation) |

2014-03-07 | conicfit | Algorithms for fitting circles, ellipses and conics based on the work by Prof. Nikolai Chernov |

2014-03-07 | CPHshape | Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model |

2014-03-07 | doRNG | Generic Reproducible Parallel Backend for foreach Loops |

2014-03-07 | dr | Methods for dimension reduction for regression |

2014-03-07 | geneSignatureFinder | A Gene-signatures finder tools |

2014-03-07 | GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods |

2014-03-07 | gptk | Gaussian Processes Tool-Kit |

2014-03-07 | Jmisc | Julian Miscellaneous Function |

2014-03-07 | Momocs | Shape Analysis of Outlines |

2014-03-07 | RAPIDR | RAPIDR: Reliable Accurate Prenatal non-Invasive Diagnosis R package |

2014-03-07 | RMediation | An R Package for Mediation Analysis Confidence Intervals |

2014-03-07 | SixSigma | Six Sigma Tools for Quality and Process Improvement |

2014-03-07 | svd | Interfaces to various state-of-art SVD and eigensolvers |

2014-03-07 | svyPVpack | A package for complex surveys including plausible values |

2014-03-07 | VBLPCM | Variational Bayes Latent Position Cluster Model for networks |

2014-03-06 | bdpv | Inference and design for predictive values in binary diagnostic tests |

2014-03-06 | covreg | A simultaneous regression model for the mean and covariance |

2014-03-06 | eiwild | Ecological Inference with individual and aggregate data |

2014-03-06 | flowfield | Forecasts future values of a univariate time series |

2014-03-06 | geometry | Mesh generation and surface tesselation |

2014-03-06 | mixRasch | Mixture Rasch Models with JMLE |

2014-03-06 | multiDimBio | Multivariate Analysis and Visualization for Biological Data |

2014-03-06 | MultiOrd | Generation of multivariate ordinal variates |

2014-03-06 | polySegratio | Simulate and test marker dosage for dominant markers in autopolyploids |

2014-03-06 | polySegratioMM | Bayesian mixture models for marker dosage in autopolyploids |

2014-03-06 | rmongodb | R-MongoDB driver |

2014-03-06 | rngtools | Utility functions for working with Random Number Generators |

2014-03-06 | rrBLUP | Ridge regression and other kernels for genomic selection |

2014-03-05 | aws | Adaptive Weights Smoothing |

2014-03-05 | awsMethods | Class and Methods definitions for packages aws, adimpro, fmri, dwi |

2014-03-05 | bagRboostR | Ensemble bagging and boosting classifiers |

2014-03-05 | expectreg | Expectile and Quantile Regression |

2014-03-05 | FDRreg | False discovery rate regression |

2014-03-05 | gWidgets2 | Rewrite of gWidgets API for simplified GUI construction |

2014-03-05 | hbim | Hill/Bliss Independence Model for Combination Vaccines |

2014-03-05 | homals | Gifi Methods for Optimal Scaling |

2014-03-05 | inarmix | Mixture models for longitudinal count data |

2014-03-05 | partDSA | Partitioning using deletion, substitution, and addition moves |

2014-03-05 | picante | R tools for integrating phylogenies and ecology |

2014-03-05 | rebird | Interface to eBird |

2014-03-05 | StatRank | Statistical Rank Aggregation: Inference, Evaluation, and Visualization |

2014-03-05 | xkcd | Plotting ggplot2 graphics in a XKCD style |

2014-03-04 | bigpca | PCA, transpose and multicore functionality for big.matrix objects |

2014-03-04 | bioPN | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |

2014-03-04 | factorplot | factorplot |

2014-03-04 | insol | Solar Radiation |

2014-03-04 | iqLearn | Interactive Q-learning |

2014-03-04 | leiv | Bivariate linear errors-in-variables estimation |

2014-03-04 | ridge | Ridge Regression with automatic selection of the penalty parameter |

2014-03-04 | ROracle | OCI based Oracle database interface for R |

2014-03-04 | sesem | Spatially explicit structural equation modeling |

2014-03-04 | Table1Heatmap | Table 1 Heatmap |

2014-03-04 | tmvtnorm | Truncated Multivariate Normal and Student t Distribution |

2014-03-04 | weights | Weighting and Weighted Statistics |

2014-03-03 | bestglm | Best Subset GLM |

2014-03-03 | cudaBayesreg | CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis |

2014-03-03 | ForeCA | ForeCA - Forecastable Component Analysis |

2014-03-03 | ICGE | Estimation of number of clusters and identification of atypical units |

2014-03-03 | neldermead | R port of the Scilab neldermead module |

2014-03-03 | parboost | Distributed Model-Based Boosting |

2014-03-03 | RADami | R Package for Phylogenetic Analysis of RADseq Data |

2014-03-03 | simFrame | Simulation framework |

2014-03-03 | SSsimple | State space models |

2014-03-03 | svIDE | SciViews GUI API - IDE and code editor functions |

2014-03-03 | tree | Classification and regression trees |

2014-03-03 | visualFields | Statistical methods for visual fields |

2014-03-03 | widals | Weighting by Inverse Distance with Adaptive Least Squares for Massive Space-Time Data |

2014-03-02 | fCertificates | fCertificates - Basics of Certificates and Structured Products Valuation |

2014-03-02 | optimbase | R port of the Scilab optimbase module |

2014-03-02 | partitionMetric | Compute a distance metric between two partitions of a set |

2014-03-02 | pastecs | Package for Analysis of Space-Time Ecological Series |

2014-03-02 | SciViews | SciViews GUI API - Main package |

2014-03-02 | SimCorMultRes | Simulates Correlated Multinomial Responses |

2014-03-02 | svDialogs | SciViews GUI API - Dialog boxes |

2014-03-02 | svDialogstcltk | SciViews GUI API - Dialog boxes using Tcl/Tk |

2014-03-02 | svGUI | SciViews GUI API - Functions to manage GUIs |

2014-03-02 | svHttp | SciViews GUI API - R HTTP server |

2014-03-02 | svKomodo | SciViews GUI API - Functions to interface with Komodo Edit/IDE |

2014-03-02 | svMisc | SciViews GUI API - Miscellaneous functions |

2014-03-02 | svSocket | SciViews GUI API - R Socket Server |

2014-03-02 | svTools | SciViews GUI API - Tools (wrapper for packages tools and codetools) |

2014-03-02 | svUnit | SciViews GUI API - Unit testing |

2014-03-02 | svWidgets | SciViews GUI API - Widgets & Windows |

2014-03-02 | tcltk2 | Tcl/Tk Additions |

2014-03-02 | zooimage | Analysis of numerical zooplankton images |

2014-03-01 | amap | Another Multidimensional Analysis Package |

2014-03-01 | amen | Additive and multiplicative effects modeling of networks and relational data |

2014-03-01 | aqr | Interface methods to use with an ActiveQuant Master Server |

2014-03-01 | BaSTA | A package for estimating age-specific survival from incomplete capture-recapture/recovery data |

2014-03-01 | CoImp | Copula based imputation method |

2014-03-01 | mcll | Monte Carlo Local Likelihood Estimation |

2014-03-01 | MTS | All-purpose toolkit for analyzing multivariate time series (MTS) and estimating multivariate volatility models |

2014-03-01 | RAHRS | Data fusion filters for Attitude Heading Reference System (AHRS) with several variants of the Kalman filter and the Mahoney and Madgwick filters |

2014-02-28 | anchors | Statistical analysis of surveys with anchoring vignettes |

2014-02-28 | bPeaks | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes |

2014-02-28 | doMC | Foreach parallel adaptor for the multicore package |

2014-02-28 | doParallel | Foreach parallel adaptor for the parallel package |

2014-02-28 | huge | High-dimensional Undirected Graph Estimation |

2014-02-28 | morgenstemning | Color schemes compatible with red-green color perception difficulties |

2014-02-28 | networkDynamic | Dynamic Extensions for Network Objects |

2014-02-28 | rpanel | Simple interactive controls for R using the tcltk library |

2014-02-28 | stpp | Space-Time Point Pattern simulation, visualisation and analysis |

2014-02-27 | aroma.apd | A probe-level data file format used by aroma.affymetrix [DEPRECATED] |

2014-02-27 | cts | Continuous Time Autoregressive Models |

2014-02-27 | GDELTtools | Download, slice, and normalize GDELT data |

2014-02-27 | isocir | Isotonic Inference for Circular data |

2014-02-27 | ndl | Naive Discriminative Learning |

2014-02-27 | panelAR | Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation |

2014-02-27 | R.huge | Methods for accessing huge amounts of data [DEPRECATED] |

2014-02-27 | SDD | Serial Dependence Diagrams |

2014-02-27 | sdnet | Soft Discretization-based Bayesian Network Inference |

2014-02-27 | zoo | S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations) |

2014-02-26 | ALKr | Generate Age-Length Keys for fish populations |

2014-02-26 | FPDC | PD-clustering and factor PD-clustering |

2014-02-26 | pencopula | Flexible Copula Density Estimation with Penalized Hierarchical B-Splines |

2014-02-26 | plyr | Tools for splitting, applying and combining data |

2014-02-26 | reutils | Talk to the NCBI EUtils |

2014-02-26 | RSpincalc | Package for converting between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors |

2014-02-26 | rvgtest | Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators |

2014-02-26 | scrypt | scrypt key derivation functions for R |

2014-02-26 | seas | Seasonal analysis and graphics, especially for climatology |

2014-02-26 | snp.plotter | snp.plotter |

2014-02-25 | CTT | Classical Test Theory Functions |

2014-02-25 | HMMpa | Analysing accelerometer data using hidden Markov models |

2014-02-25 | MatrixEQTL | MatrixEQTL: Ultra fast eQTL analysis via large matrix operations |

2014-02-25 | pendensity | Density Estimation with a Penalized Mixture Approach |

2014-02-25 | R.oo | R object-oriented programming with or without references |

2014-02-25 | saemix | Stochastic Approximation Expectation Maximization (SAEM) algorithm |

2014-02-25 | SimuChemPC | Simulation process of 4 selection methods in predicting chemical potent compounds |

2014-02-25 | tspmeta | Instance feature calculation and evolutionary instance generation for the traveling salesman problem |

2014-02-24 | accrual | Bayesian Accrual Prediction |

2014-02-24 | biom | An interface package (beta) for the BIOM file format |

2014-02-24 | catdata | Categorical Data |

2014-02-24 | compare | Comparing Objects for Differences |

2014-02-24 | FinCal | Time Value of Money, time series analysis and Computational Finance |

2014-02-24 | fractaldim | Estimation of fractal dimensions |

2014-02-24 | graphicsQC | Quality Control for Graphics in R |

2014-02-24 | gridBase | Integration of base and grid graphics |

2014-02-24 | GSM | Gamma Shape Mixture |

2014-02-24 | lmodel2 | Model II Regression |

2014-02-24 | msir | Model-based Sliced Inverse Regression |

2014-02-24 | MSwM | Fitting Markov Switching Models |

2014-02-24 | mvc | Multi-View Clustering |

2014-02-24 | pcrcoal | A package implementing the coalescent approach to PCR simulation developed by Weiss and von Haeseler (NAR, 1997) |

2014-02-24 | RegClust | Cluster analysis via regression coefficients |

2014-02-24 | RYoudaoTranslate | R package provide functions to translate English words into Chinese |

2014-02-24 | spikeSlabGAM | Bayesian variable selection and model choice for generalized additive mixed models |

2014-02-24 | StableEstim | Estimate the 4 parameters of stable law using different methods |

2014-02-24 | tabplot | Tableplot, a visualization of large datasets |

2014-02-24 | tsfa | Time Series Factor Analysis |

2014-02-24 | x12 | x12 - wrapper function and structure for batch processing |

2014-02-24 | x12GUI | X12 - Graphical User Interface |

2014-02-23 | eeptools | Convenience functions for education data |

2014-02-23 | EMMIXcontrasts | Contrasts in mixed effects for EMMIX model with random effects |

2014-02-23 | growcurves | Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects |

2014-02-23 | parma | Portfolio Allocation and Risk Management Applications |

2014-02-23 | psData | A package to download regularly maintained political science data sets and make commonly used, but infrequently updated variables based on this data |

2014-02-23 | R2SWF | Convert R Graphics to Flash Animations |

2014-02-23 | sysfonts | Loading system fonts into R |

2014-02-22 | baseline | Baseline Correction of Spectra |

2014-02-22 | blender | Analyze biotic homogenization of landscapes |

2014-02-22 | bursts | Markov model for bursty behavior in streams |

2014-02-22 | cairoDevice | Cairo-based cross-platform antialiased graphics device driver |

2014-02-22 | DSL | Distributed Storage and List |

2014-02-22 | hcci | Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap) |

2014-02-22 | hive | Hadoop InteractiVE |

2014-02-22 | lavaan.survey | Complex survey Structural Equation Modeling (SEM) |

2014-02-22 | plumbr | Mutable and dynamic data models |

2014-02-22 | Rgnuplot | R interface for gnuplot |

2014-02-21 | arf3DS4 | Activated Region Fitting, fMRI data analysis (3D) |

2014-02-21 | bcool | Bringing to light significant Columns correlated with Organism Labels |

2014-02-21 | clere | CLERE methodology for simultaneous variables clustering and regression |

2014-02-21 | dynlm | Dynamic Linear Regression |

2014-02-21 | eulerian | eulerian: A package to find eulerian paths from graphs |

2014-02-21 | gamlss.spatial | Package to fit spatial data in gamlss |

2014-02-21 | glogis | Fitting and Testing Generalized Logistic Distributions |

2014-02-21 | longCatEDA | Package for Plotting Categorical Longitudinal and Time-Series Data |

2014-02-21 | lpmodeler | Modeler for linear programs (LP) and mixed integer linear programs (MILP) |

2014-02-21 | ncdf4.helpers | Helper functions for use with the ncdf4 package |

2014-02-21 | RDieHarder | R interface to the dieharder RNG test suite |

2014-02-21 | Rmosek | The R-to-MOSEK Optimization Interface |

2014-02-21 | rsnps | Get SNP (Single-Nucleotide Polymorphism) data on the web |

2014-02-21 | selectr | Translate CSS Selectors to XPath Expressions |

2014-02-21 | SPAr | Perform rare variants association analysis based on summation of partition approaches |

2014-02-21 | treebase | An R package for discovery, access and manipulation of online phylogenies |

2014-02-21 | TTAinterfaceTrendAnalysis | Temporal Trend Analysis Graphical Interface |

2014-02-21 | zendeskR | Zendesk API Wrapper |

2014-02-20 | ARTP | Gene and Pathway p-values computed using the Adaptive Rank Truncated Product |

2014-02-20 | denstrip | Density strips and other methods for compactly illustrating distributions |

2014-02-20 | DiagTest3Grp | Diagnostic test summary measures for three ordinal groups |

2014-02-20 | diffusionMap | Diffusion map |

2014-02-20 | diveMove | Dive analysis and calibration |

2014-02-20 | diversitree | diversitree: comparative phylogenetic analyses of diversification |

2014-02-20 | fftwtools | Wrapper for fftw3: includes 1-D, univariate and multivariate, and 2-D transform |

2014-02-20 | highriskzone | Determining and evaluating high-risk zones |

2014-02-20 | lm.br | Linear Model with Breakpoint |

2014-02-20 | lorec | LOw Rand and sparsE Covariance matrix estimation |

2014-02-20 | mixreg | Functions to fit mixtures of regressions |

2014-02-20 | OLScurve | OLS growth curve trajectories |

2014-02-20 | restorepoint | Debugging with restore points |

2014-02-20 | RFreak | R/FrEAK interface |

2014-02-19 | gld | Estimation and use of the generalised (Tukey) lambda distribution |

2014-02-19 | mGSZ | Gene set analysis based on GSZ-scoring function and asymptotic p-value |

2014-02-18 | forams | Foraminifera and Community Ecology Analyses |

2014-02-18 | gdistance | distances and routes on geographical grids |

2014-02-18 | metrumrg | Pharmacometric tools for data preparation, modeling, simulation, and reporting |

2014-02-18 | pbdDEMO | Programming with Big Data – Demonstrations of pbd Packages |

2014-02-18 | rfisheries | R interface for fisheries data |

2014-02-18 | SimSeq | Nonparametric Simulation of RNA-Seq Data |

2014-02-18 | SKAT | SNP-set (Sequence) Kernel Association Test |

2014-02-17 | bshazard | Nonparametric Smoothing of the Hazard Function |

2014-02-17 | CVD | Color Vision Deficiencies |

2014-02-17 | edeR | Email Data Extraction Using R |

2014-02-17 | eha | Event History Analysis |

2014-02-17 | grppenalty | Concave 1-norm and 2-norm group penalty in linear and logistic regression |

2014-02-17 | mutoss | Unified multiple testing procedures |

2014-02-17 | praktikum | Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu |

2014-02-17 | RcmdrPlugin.pointG | Graphical POINT of view for questionnaire data Rcmdr Plug-In |

2014-02-17 | SoftClustering | Soft Clustering Algorithms |

2014-02-17 | turner | Turn vectors and lists of vectors into indexed structures |

2014-02-17 | YPmodel | The Short-term and Long-term Hazard Ratio Model for Survival Data |

2014-02-16 | DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |

2014-02-16 | sdtoolkit | Scenario Discovery Tools to Support Robust Decision Making |

2014-02-15 | BMhyd | PCM for Hybridization |

2014-02-15 | CRAC | Cosmology R Analysis Code |

2014-02-15 | mistral | Methods in Structural Reliability |

2014-02-15 | rSFA | Slow Feature Analysis in R |

2014-02-14 | CCMnet | Simulate Congruence Class Model for Networks |

2014-02-14 | prospectr | Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data |

2014-02-14 | rtiff | A tiff reader for R |

2014-02-14 | surface | Fitting Hansen Models to Investigate Convergent Evolution |

2014-02-13 | KATforDCEMRI | Kinetic analysis and visualization of DCE-MRI data |

2014-02-13 | rsae | Robust Small Area Estimation |

2014-02-13 | wrspathrow | Functions for working with Worldwide Reference System (WRS) |

2014-02-12 | bio.infer | Predict environmental conditions from biological observations |

2014-02-12 | CHNOSZ | Chemical Thermodynamics and Activity Diagrams |

2014-02-12 | ecosim | Toolbox for Aquatic Ecosystem Modeling |

2014-02-12 | expm | Matrix exponential |

2014-02-12 | fitdistrplus | Help to fit of a parametric distribution to non-censored or censored data |

2014-02-12 | MarkowitzR | Statistical significance of the Markowitz portfolio |

2014-02-12 | MatrixModels | Modelling with Sparse And Dense Matrices |

2014-02-12 | mcr | Method Comparison Regression |

2014-02-12 | MLCM | Maximum Likelihood Conjoint Measurement |

2014-02-12 | packdep | Mapping dependencies among R packages |

2014-02-12 | QCGWAS | Quality Control of Genome Wide Association Study results |

2014-02-12 | RInside | C++ classes to embed R in C++ applications |

2014-02-12 | SAM | Sparse Additive Modelling |

2014-02-12 | wrspathrowData | Data used by the wrspathrow package |

2014-02-11 | bfa | Bayesian Factor Analysis |

2014-02-11 | chromoR | Analysis of chromosomal interactions data (correction, segmentation and comparison) |

2014-02-11 | chron | Chronological objects which can handle dates and times |

2014-02-11 | dlmodeler | Generalized Dynamic Linear Modeler |

2014-02-11 | filehash | Simple key-value database |

2014-02-11 | frair | Functional response analysis in R |

2014-02-11 | gamboostMSM | Estimating multistate models using gamboost() |

2014-02-11 | HMMCont | Hidden Markov Model for Continuous Observations Processes |

2014-02-11 | IgorR | Read binary files saved by Igor Pro (including Neuromatic data) |

2014-02-11 | kknn | Weighted k-Nearest Neighbors |

2014-02-11 | phenex | Auxiliary functions for phenological data analysis |

2014-02-11 | scatterplot3d | 3D Scatter Plot |

2014-02-11 | schwartz97 | A package on the Schwartz two-factor commodity model |

2014-02-10 | bayesTFR | Bayesian Fertility Projection |

2014-02-10 | bmrm | Bundle Methods for Regularized Risk Minimization Package |

2014-02-10 | FKF | Fast Kalman Filter |

2014-02-10 | localgauss | Estimating local Gaussian parameters |

2014-02-10 | npst | Generalization of Hewitt's Seasonality Test |

2014-02-10 | PCAmixdata | Multivariate analysis for a mixture of quantitative and qualitative data |

2014-02-10 | rtop | Interpolation of data with variable spatial support |

2014-02-10 | statnet | Software tools for the Statistical Analysis of Network Data |

2014-02-10 | tfplot | Time Frame User Utilities |

2014-02-09 | lambda.tools | Tools for modeling data with functional programming |

2014-02-09 | phom | Persistent Homology in R |

2014-02-09 | soc.ca | Specific correspondence analysis for the social sciences |

2014-02-09 | XNomial | Exact Goodness-Of-Fit Test For Multinomial Data With Fixed Probabilities |

2014-02-08 | FAiR | Factor Analysis in R |

2014-02-08 | phyreg | Implements the Phylogenetic Regression of Grafen (1989) |

2014-02-08 | tmle.npvi | Targeted Minimum Loss Estimation (TMLE) of a NP variable importance of a continuous exposure |

2014-02-07 | cpca | Methods to perform Common Principal Component Analysis (CPCA) |

2014-02-07 | gpr | A Minimalistic package to apply Gaussian Process in R |

2014-02-07 | maxstat | Maximally Selected Rank Statistics |

2014-02-07 | networkDynamicData | dynamic network datasets |

2014-02-07 | RcmdrPlugin.EACSPIR | Plugin de R-Commander para el manual EACSPIR |

2014-02-07 | Ruchardet | R package to detect character encoding |

2014-02-07 | SYNCSA | SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities |

2014-02-06 | easynls | Easy nonlinear model |

2014-02-06 | logcondiscr | Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations |

2014-02-06 | ltsk | local time space kriging |

2014-02-06 | multiplex | Analysis of Multiple Social Networks with Algebra |

2014-02-06 | smoothtail | Smooth Estimation of GPD Shape Parameter |

2014-02-06 | unbalanced | The package implements different data-driven method for unbalanced datasets |

2014-02-06 | VecStatGraphs2D | Vector analysis using graphical and analytical methods in 2D |

2014-02-05 | eRm | Extended Rasch Modeling |

2014-02-05 | paf | Attributable Fraction Function for Censored Survival Data |

2014-02-05 | rpart.plot | Plot rpart models. An enhanced version of plot.rpart |

2014-02-05 | Rssa | A collection of methods for singular spectrum analysis |

2014-02-05 | StrainRanking | Ranking of pathogen strains |

2014-02-04 | depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |

2014-02-04 | hydroGOF | Goodness-of-fit functions for comparison of simulated and observed hydrological time series |

2014-02-04 | igraphdata | A collection of network data sets for the igraph package |

2014-02-04 | iScreen | image-based High-Throughput RNAi Screening Analysis Tool |

2014-02-04 | plotmo | Plot a model's response while varying the values of the predictors |

2014-02-04 | spc | Statistical Process Control – Collection of Some Useful Functions |

2014-02-03 | frbs | Fuzzy Rule-based Systems for Classification and Regression Tasks |

2014-02-03 | MAd | Meta-Analysis with Mean Differences |

2014-02-03 | MetABEL | Meta-analysis of genome-wide SNP association results |

2014-02-03 | PIGShift | Polygenic Inverse Gamma rate Shifts |

2014-02-03 | pmclust | Parallel Model-Based Clustering |

2014-02-03 | sampSurf | Sampling Surface Simulation for Areal Sampling Methods |

2014-02-02 | optimsimplex | R port of the Scilab optimsimplex module |

2014-02-01 | SCBmeanfd | Simultaneous Confidence Bands for the Mean of Functional Data |

2014-02-01 | vbdm | Variational Bayes Discrete Mixture Model |

2014-01-31 | bqtl | Bayesian QTL mapping toolkit |

2014-01-31 | EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |

2014-01-31 | fdaMixed | Functional data analysis in a mixed model framework |

2014-01-31 | gdalUtils | Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities |

2014-01-31 | HLMdiag | Diagnostic tools for hierarchical (multilevel) linear models |

2014-01-31 | jackstraw | Non-parametric Jackstraw for Principal Component Analysis |

2014-01-31 | loe | Local Ordinal Embedding |

2014-01-31 | lsr | Companion package to "Learning Statistics with R" |

2014-01-31 | naturalsort | Natural Ordering |

2014-01-31 | ndtv | Network Dynamic Temporal Visualizations |

2014-01-31 | Pomic | Pomic |

2014-01-31 | rgam | Robust Generalized Additive Model |

2014-01-31 | SBSA | Simplified Bayesian Sensitivity Analysis |

2014-01-31 | simplexreg | Regression Analysis of Proportional Data Using Simplex Distribution |

2014-01-31 | textir | Inverse Regression for Text Analysis |

2014-01-30 | mmeta | Multivariate Meta-Analysis |

2014-01-30 | nonlinearTseries | R package for nonlinear time series analysis |

2014-01-30 | pSI | Specificity Index Statistic |

2014-01-30 | VariABEL | Testing of genotypic variance heterogeneity to detect potentially interacting SNP |

2014-01-29 | ENA | Ensemble Network Aggregation |

2014-01-29 | fdasrvf | Elastic Functional Data Analysis |

2014-01-29 | lazyData | A LazyData Facility |

2014-01-29 | PCIT | PCIT algorithm - Partial Correlation Coefficient with Information Theory |

2014-01-29 | permute | Functions for generating restricted permutations of data |

2014-01-29 | VoxR | Metrics extraction of trees from T-LiDAR data |

2014-01-28 | AER | Applied Econometrics with R |

2014-01-28 | BayesMed | Default Bayesian hypothesis tests for correlation, partial correlation, and mediation |

2014-01-28 | BB | Solving and Optimizing Large-Scale Nonlinear Systems |

2014-01-28 | cacIRT | Classification accuracy and consistency under Item Response Theory |

2014-01-28 | CVcalibration | Estimation of the Calibration Equation with Error-in Observations |

2014-01-28 | earth | Multivariate Adaptive Regression Spline Models |

2014-01-28 | in2extRemes | Into the extRemes Package |

2014-01-28 | RapidPolygonLookup | Polygon lookup using kd trees |

2014-01-28 | Rramas | Matrix population models |

2014-01-28 | SGP | An R Package for the Calculation and Visualization of Student Growth Percentiles & Percentile Growth Trajectories |

2014-01-28 | TAQMNGR | Manage tick-by-tick transaction data |

2014-01-27 | drgee | Doubly Robust Generalized Estimating Equations |

2014-01-27 | dualScale | Dual Scaling Analysis of Multiple Choice Data |

2014-01-27 | ebal | Entropy reweighting to create balanced samples |

2014-01-27 | MergeGUI | A GUI for Merging Datasets in R |

2014-01-27 | Synth | Synthetic Control Group Method for Comparative Case Studies |

2014-01-26 | oro.dicom | Rigorous - DICOM Input / Output |

2014-01-26 | RcppClassic | Deprecated 'classic' Rcpp API |

2014-01-26 | RcppZiggurat | Rcpp integration of different Ziggurat Normal RNG implementations |

2014-01-26 | RISmed | Download content from NCBI databases |

2014-01-26 | sqliter | Connection wrapper to SQLite databases |

2014-01-25 | futile.logger | A logging library for R |

2014-01-25 | gnmf | Generalized Non-negative Matrix Factorization Based on Renyi Divergence |

2014-01-25 | irlba | Fast partial SVD by implicitly-restarted Lanczos bidiagonalization |

2014-01-25 | PEMM | A Penalized EM algorithm incorporating missing-data mechanism |

2014-01-25 | rbounds | Perform Rosenbaum bounds sensitivity tests for matched and unmatched data |

2014-01-25 | RWiener | Wiener process distribution functions |

2014-01-25 | TIMP | a problem solving environment for fitting separable nonlinear models in physics and chemistry applications |

2014-01-24 | DPw | Semiparametric Bayesian procedure for selecting a subset containing the weakest species with an acceptably high probability |

2014-01-24 | gconcord | Concord method for Graphical Model Selection |

2014-01-24 | lmeNB | Fit negative binomial mixed-effect regression model |

2014-01-24 | lmeNBBayes | Sample from the posterior of the negative binomial mixed-effect regression model. The random effect is modeled with DP mixture of beta distributions |

2014-01-24 | LSC | Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |

2014-01-24 | vegdata | Functions to access vegetation databases (Turboveg) and prepare vegetation data especially its taxonomy for analysis |

2014-01-23 | choplump | Choplump tests |

2014-01-23 | correlate | Multivariate Data Generation by Permutation |

2014-01-23 | cSFM | Covariate-adjusted Skewed Functional Model (cSFM) |

2014-01-23 | gitter | an R package for quantification of pinned microbial culture |

2014-01-23 | hydroTSM | Time series management, analysis and interpolation for hydrological modelling |

2014-01-23 | interval | Weighted Logrank Tests and NPMLE for interval censored data |

2014-01-23 | irtoys | Simple interface to the estimation and plotting of IRT models |

2014-01-23 | jpeg | Read and write JPEG images |

2014-01-23 | lambda.r | Modeling Data with Functional Programming |

2014-01-23 | lmtest | Testing Linear Regression Models |

2014-01-23 | msos | Datasets and Functions used in Multivariate Statistics: Old School by John Marden |

2014-01-23 | pedantics | Functions to facilitate power and sensitivity analyses for genetic studies of natural populations |

2014-01-23 | saws | Small-Sample Adjustments for Wald tests Using Sandwich Estimators |

2014-01-23 | sigclust | Statistical Significance of Clustering |

2014-01-22 | acs | Download, manipulate, and present data from the US Census American Community Survey |

2014-01-22 | BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |

2014-01-22 | c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |

2014-01-22 | Gammareg | classic gamma regression: joint modeling of mean and shape parameters |

2014-01-22 | psyphy | Functions for analyzing psychophysical data in R |

2014-01-22 | RAMpath | Structural Equation Modeling using the reticular action model (RAM) Notation |

2014-01-22 | rateratio.test | Exact rate ratio test |

2014-01-22 | rkt | Mann-Kendall test, Seasonal and Regional Kendall Tests |

2014-01-22 | survival | Survival Analysis |

2014-01-22 | tergm | Fit, Simulate and Diagnose Models for Network Evolution based on Exponential-Family Random Graph Models |

2014-01-21 | AID | An R Package to Estimate Box-Cox Power Transformation Parameter |

2014-01-21 | gvlma | Global Validation of Linear Models Assumptions |

2014-01-21 | MissMech | Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random |

2014-01-21 | truncnorm | Truncated normal distribution |

2014-01-21 | useful | A collection of handy, useful functions |

2014-01-20 | AOfamilies | Aranda-Ordaz (AO) transformation families |

2014-01-20 | Disake | Discrete associated kernel estimators |

2014-01-20 | HUM | compute HUM value and visualize ROC curves |

2014-01-20 | mistat | Data sets, functions and examples from the book:"Modern Industrial Statistics" by Kenett, Zacks and Amberti |

2014-01-20 | MLDS | Maximum Likelihood Difference Scaling |

2014-01-20 | SGPdata | Exemplar data sets for SGP analyses |

2014-01-19 | blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |

2014-01-19 | cda | Coupled dipole approximation of light scattering by clusters of nanoparticles |

2014-01-19 | IBHM | Approximation using the IBHM method |

2014-01-19 | ldbounds | Lan-DeMets Method for Group Sequential Boundaries |

2014-01-19 | mfx | Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs |

2014-01-19 | RHRV | Heart rate variability analysis of ECG data |

2014-01-19 | RTextTools | Automatic Text Classification via Supervised Learning |

2014-01-19 | simexaft | simexaft |

2014-01-19 | WeightedCluster | Clustering of Weighted Data |

2014-01-18 | gamlss.mx | A GAMLSS add on package for fitting mixture distributions |

2014-01-18 | gamlss.tr | Generating and fitting truncated (gamlss.family) distributions |

2014-01-18 | HBSTM | Hierarchical Bayesian Space-Time models for Gaussian space-time data |

2014-01-18 | NanoStringNorm | Normalize NanoString miRNA and mRNA data |

2014-01-18 | Sequential | Exact Sequential Analysis for Poisson Data |

2014-01-17 | additivityTests | Additivity tests in the two way ANOVA with single sub-class numbers |

2014-01-17 | arulesSequences | Mining frequent sequences |

2014-01-17 | breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |

2014-01-17 | dosresmeta | Performing multivariate dose-response meta-analysis |

2014-01-17 | eventInterval | Sequential event interval analysis |

2014-01-17 | games | Statistical Estimation of Game-Theoretic Models |

2014-01-17 | odfWeave | Sweave processing of Open Document Format (ODF) files |

2014-01-17 | rbhl | R interface to the Biodiversity Heritage Library |

2014-01-17 | SCORER2 | SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences |

2014-01-17 | wpp2008 | World Population Prospects 2008 |

2014-01-16 | bdynsys | Bayesian Dynamical System Model |

2014-01-16 | blockcluster | Co-Clustering package for binary, contingency, continuous and categorical data-sets |

2014-01-16 | desirability | Desirabiliy Function Optimization and Ranking |

2014-01-16 | dfexplore | Explore data.frames by plotting NA and classes of each variable |

2014-01-16 | fastHICA | Hierarchical Independent Component Analysis: a multi-scale sparse non-orthogonal data-driven basis |

2014-01-16 | mapproj | Map Projections |

2014-01-16 | multinbmod | Regression analysis of overdispersed correlated count data |

2014-01-16 | quadrupen | Sparsity by Worst-Case Quadratic Penalties |

2014-01-16 | sm | Smoothing methods for nonparametric regression and density estimation |

2014-01-15 | cba | Clustering for Business Analytics |

2014-01-15 | clustsig | Significant Cluster Analysis |

2014-01-15 | fishmove | Prediction of Fish Movement Parameters |

2014-01-15 | Funclustering | A package for functional data clustering |

2014-01-15 | GWsignif | Genome-wide significance for whole genome sequencing studies |

2014-01-15 | hwriterPlus | hwriterPlus: Extending the hwriter Package |

2014-01-15 | lmomRFA | Regional frequency analysis using L-moments |

2014-01-15 | loa | loa: various plots, options and add-ins for use with lattice |

2014-01-15 | mph | Multiscale persistent homology |

2014-01-15 | OPDOE | OPtimal Design Of Experiments |

2014-01-15 | RAtmosphere | Standard Atmospheric profiles |

2014-01-15 | reglogit | Simulation-based Regularized Logistic Regression |

2014-01-15 | TH.data | TH's Data Archive |

2014-01-14 | AcceptanceSampling | Creation and evaluation of Acceptance Sampling Plans |

2014-01-14 | ICEinfer | Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples |

2014-01-14 | iDynoR | R Analysis package for iDynoMiCS Simulation Results |

2014-01-14 | linkim | Linkage information based genotype imputation method |

2014-01-14 | oz | Plot the Australian coastline and states |

2014-01-14 | rEMM | Extensible Markov Model (EMM) for Data Stream Clustering in R |

2014-01-14 | RockFab | Rock fabric and strain analysis tools |

2014-01-14 | RXshrink | Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression |

2014-01-14 | sna | Tools for Social Network Analysis |

2014-01-14 | TraMineR | Trajectory miner: a toolbox for exploring and rendering sequence data |

2014-01-13 | ccda | Combined Cluster and Discriminant Analysis |

2014-01-13 | ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |

2014-01-13 | FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis |

2014-01-13 | geophys | Geophysics, Continuum Mechanics, Mogi Model |

2014-01-13 | LIM | Linear Inverse Model examples and solution methods |

2014-01-13 | MF | Mitigated Fraction |

2014-01-13 | NetIndices | Estimating network indices, including trophic structure of foodwebs in R |

2014-01-13 | pkgutils | pkgutils – Utilities for creating R packages |

2014-01-13 | SCMA | Single-Case Meta-Analysis |

2014-01-13 | TimeMachine | Time Machine |

2014-01-12 | pcIRT | IRT models for polytomous and continuous item responses |

2014-01-11 | DSBayes | Bayesian subgroup analysis in clinical trials |

2014-01-11 | gamlss.cens | Fitting an interval response variable using gamlss.family distributions |

2014-01-11 | gamlss.data | GAMLSS Data |

2014-01-11 | gamlss.demo | Demos for GAMLSS |

2014-01-11 | kst | Knowledge Space Theory |

2014-01-11 | tempdisagg | Methods for Temporal Disaggregation and Interpolation of TimeSeries |

2014-01-10 | citbcmst | CIT Breast Cancer Molecular SubTypes Prediction |

2014-01-10 | citccmst | CIT Colon Cancer Molecular SubTypes Prediction |

2014-01-10 | CpGassoc | Association between Methylation and a phenotype of interest |

2014-01-10 | DiceKriging | Kriging methods for computer experiments |

2014-01-10 | genalg | R Based Genetic Algorithm |

2014-01-10 | GroupSeq | A GUI-based program to compute probabilities regarding group sequential designs |

2014-01-10 | jointPm | Risk estimation using the joint probability method |

2014-01-10 | networkTomography | Tools for network tomography |

2014-01-10 | phylosim | R package for simulating biological sequence evolution |

2014-01-10 | plRasch | Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation |

2014-01-10 | poLCA | Polytomous variable Latent Class Analysis |

2014-01-10 | vectoptim | Vectorized optimization methods |

2014-01-09 | cwm | Cluster Weighted Models by EM algorithm |

2014-01-09 | dagR | R functions for directed acyclic graphs |

2014-01-09 | gpmap | Analysing and plotting genotype-phenotype maps |

2014-01-09 | IsingSampler | Sampling methods and distribution functions for the Ising model |

2014-01-09 | mhsmm | Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences |

2014-01-08 | CADFtest | This package performs the CADF unit root test proposed in Hansen (1995) |

2014-01-08 | diagram | Functions for visualising simple graphs (networks), plotting flow diagrams |

2014-01-08 | glpkAPI | R Interface to C API of GLPK |

2014-01-08 | GRaF | Species distribution modelling using latent Gaussian random fields |

2014-01-08 | MultiPhen | MultiPhen, a package for the genetic association testing of multiple phenotypes |

2014-01-08 | numbers | Number-theoretic Functions |

2014-01-08 | PGM2 | Recursive method for construction of nested resolvable designs and uniform designs associated |

2014-01-08 | rootSolve | Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations |

2014-01-08 | shape | Functions for plotting graphical shapes, colors |

2014-01-08 | WhatIf | WhatIf: Software for Evaluating Counterfactuals |

2014-01-07 | AdMit | Adaptive Mixture of Student-t distributions |

2014-01-07 | bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |

2014-01-07 | marelac | Tools for Aquatic Sciences |

2014-01-07 | multic | Quantitative linkage analysis tools using the variance components approach |

2014-01-07 | PEIP | Functions for Aster Book on Inverse Theory |

2014-01-07 | plot3D | Plotting multi-dimensional data |

2014-01-07 | rapportools | Miscellaneous (stats) helper functions with sane defaults for reporting |

2014-01-07 | rfishbase | R Interface to FishBASE |

2014-01-07 | rriskDistributions | Fitting distributions to given data or known quantiles |

2014-01-07 | RVowpalWabbit | R interface to the Vowpal Wabbit |

2014-01-07 | shuffle | The shuffle estimator for explainable variance |

2014-01-07 | smatr | (Standardised) Major Axis Estimation and Testing Routines |

2014-01-07 | streamR | Access to Twitter Streaming API via R |

2014-01-06 | FLLat | Fused Lasso Latent Feature Model |

2014-01-06 | gte | Generalized Turnbull's estimator |

2014-01-06 | oem | Orthogonalizing Expectation maximization |

2014-01-06 | RFOC | Graphics for Spherical Distributions and Earthquake Focal Mechanisms |

2014-01-06 | robcor | Robust Correlations |

2014-01-06 | Rquake | Seismic Hypocenter Determination |

2014-01-06 | RTOMO | Visualization for seismic tomography |

2014-01-06 | sfa | Stochastic Frontier Analysis |

2014-01-06 | survSNP | Power and Sample Size Calculations for SNP Association Studies with Censored Time to Event Outcomes |

2014-01-06 | TeachNet | Fits neural networks to learn about back propagation |

2014-01-05 | GEOmap | Topographic and Geologic Mapping |

2014-01-05 | glmmGS | Gauss-Seidel Generalized Linear Mixed Model solver |

2014-01-05 | RClimMAWGEN | RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations |

2014-01-05 | R.methodsS3 | Utility function for defining S3 methods |

2014-01-05 | RSEIS | Seismic Time Series Analysis Tools |

2014-01-04 | DESnowball | Bagging with Distance-based Regression for Differential Gene Expression Analyses |

2014-01-04 | RPMG | Graphical User Interface (GUI) for interactive R analysis sessions |

2014-01-04 | SharpeR | Statistical significance of Sharpe ratio |

2014-01-04 | SWATmodel | A multi-OS implementation of the TAMU SWAT model |

2014-01-03 | AdaptiveSparsity | Adaptive Sparsity Models |

2014-01-03 | compHclust | Complementary Hierarchical Clustering |

2014-01-03 | cosmosR | cosmosR |

2014-01-03 | datalist | An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables |

2014-01-03 | fractal | Fractal Time Series Modeling and Analysis |

2014-01-03 | geozoo | Zoo of Geometric Objects |

2014-01-03 | glmnetcr | Fit a penalized constrained continuation ratio model for predicting an ordinal response |

2014-01-03 | glmpathcr | Fit a penalized continuation ratio model for predicting an ordinal response |

2014-01-03 | qiimer | Work with QIIME Output Files in R |

2014-01-03 | qrfactor | Simultaneous simulation of Q and R mode factor analyses with Spatial data |

2014-01-02 | BayesComm | Bayesian community ecology analysis |

2014-01-02 | binom | Binomial Confidence Intervals For Several Parameterizations |

2014-01-02 | BioGeoBEARS | BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |

2014-01-02 | FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data |

2014-01-02 | glmmBUGS | Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS |

2014-01-02 | gnm | Generalized Nonlinear Models |

2014-01-02 | PBImisc | A set of datasets used in my classes or in the book ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych” |

2014-01-02 | PedCNV | An implementation for association analysis with CNV data |

2014-01-02 | RCA | Relational Class Analysis |

2014-01-02 | robustgam | Robust Estimation for Generalized Additive Models |

2014-01-02 | VIMGUI | Visualization and Imputation of Missing Values |

2014-01-02 | xts | eXtensible Time Series |

2014-01-01 | mmm | an R package for analyzing multivariate longitudinal data with multivariate marginal models |

2014-01-01 | PLRModels | Statistical inference in partial linear regression models |

2014-01-01 | showtext | Enable (any) R Graphics Device to Show Text Using System Fonts |

2013-12-31 | biplotbootGUI | Bootstrap on Classical Biplots |

2013-12-31 | DCGL | Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data |

2013-12-31 | fitDRC | Fitting Density Ratio Classes |

2013-12-31 | lubridate | Make dealing with dates a little easier |

2013-12-31 | missForest | Nonparametric Missing Value Imputation using Random Forest |

2013-12-31 | mmm2 | Multivariate marginal models with shared regression parameters |

2013-12-31 | texmex | Statistical modelling of extreme values |

2013-12-31 | TiddlyWikiR | Create dynamic reports using a TiddlyWiki template |

2013-12-30 | dcemriS4 | A Package for Medical Image Analysis (S4 implementation) |

2013-12-30 | dtt | Discrete Trigonometric Transforms |

2013-12-30 | financial | Solving financial problems in R |

2013-12-30 | mblm | Median-Based Linear Models |

2013-12-30 | moonsun | Basic astronomical calculations with R |

2013-12-30 | PIGE | Self contained gene set analysis for gene- and pathway-environment interaction analysis |

2013-12-30 | sapa | Spectral Analysis for Physical Applications |

2013-12-30 | sdprisk | Measures of Risk for the Compound Poisson Risk Process with Diffusion |

2013-12-30 | seawaveQ | U.S. Geological Survey seawaveQ model |

2013-12-30 | stab | data analysis of drug stability for shelf life estimation |

2013-12-30 | wmtsa | Wavelet Methods for Time Series Analysis |

2013-12-29 | BiasedUrn | Biased Urn model distributions |

2013-12-29 | spate | Spatio-temporal modeling of large data using a spectral SPDE approach |

2013-12-28 | acm4r | Align-and-Count Method comparisons of RFLP data |

2013-12-28 | mhurdle | Multiple hurdle Tobit models |

2013-12-28 | pglm | panel generalized linear model |

2013-12-28 | plm | Linear Models for Panel Data |

2013-12-28 | prevR | Estimating regional trends of a prevalence from a DHS |

2013-12-28 | rgabriel | Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot |

2013-12-27 | clustrd | Methods for joint dimension reduction and clustering |

2013-12-27 | extfunnel | Additional Funnel Plot Augmentations |

2013-12-27 | fptdApprox | Approximation of first-passage-time densities for diffusion processes |

2013-12-27 | GenABEL | genome-wide SNP association analysis |

2013-12-27 | GenABEL.data | Package contains data which is used by GenABEL example and test functions |

2013-12-27 | mlogit | multinomial logit model |

2013-12-27 | oro.nifti | Rigorous - NIfTI+ANALYZE+AFNI Input / Output |

2013-12-27 | ROC632 | Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling |

2013-12-27 | saves | Fast load variables |

2013-12-27 | SIN | A SINful Approach to Selection of Gaussian Graphical Markov Models |

2013-12-27 | spider | Species Identity and Evolution in R |

2013-12-27 | truncreg | Truncated Gaussian Regression Models |

2013-12-26 | cpk | Clinical Pharmacokinetics |

2013-12-26 | mycobacrvR | Integrative immunoinformatics for Mycobacterial diseases in R platform |

2013-12-25 | kmc | Kaplan - Meier estimator with constraints for right censored data – a recursive computational algorithm |

2013-12-24 | evt0 | Mean of order p, peaks over random threshold Hill and high quantile estimates |

2013-12-24 | RcmdrPlugin.sos | Efficiently search the R help pages |

2013-12-24 | rJava | Low-level R to Java interface |

2013-12-24 | safeBinaryRegression | Safe Binary Regression |

2013-12-24 | TSTutorial | Fitting and Predict Time Series Interactive Laboratory |

2013-12-23 | audio | Audio Interface for R |

2013-12-23 | genoPlotR | Plot publication-grade gene and genome maps |

2013-12-23 | MigClim | Implementing dispersal into species distribution models |

2013-12-23 | pcaL1 | Three L1-Norm PCA Methods |

2013-12-23 | SHIP | SHrinkage covariance Incorporating Prior knowledge |

2013-12-23 | waveslim | Basic wavelet routines for one-, two- and three-dimensional signal processing |

2013-12-22 | SamplerCompare | A framework for comparing the performance of MCMC samplers |

2013-12-21 | JGR | JGR - Java GUI for R |

2013-12-21 | pa | Performance Attribution for Equity Portfolios |

2013-12-21 | pcaPA | Parallel Analysis for ordinal and numeric data using polychoric and Pearson correlations with S3 classes |

2013-12-21 | pmcgd | pmcgd |

2013-12-21 | RSofia | Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R |

2013-12-21 | SemiCompRisks | Parametric and semi-parametric analyses of semi-competing risks data |

2013-12-21 | XiMpLe | A simple XML tree parser and generator |

2013-12-20 | AdequacyModel | Adequacy of probabilistic models and generation of pseudo-random numbers |

2013-12-20 | cit | Causal Inference Test |

2013-12-20 | ipred | Improved Predictors |

2013-12-20 | LINselect | Selection of linear estimators |

2013-12-20 | LPS | Linear Predictor Score, for binary inference from multiple continuous variables |

2013-12-20 | ltm | Latent Trait Models under IRT |

2013-12-20 | polytomous | Polytomous logistic regression for fixed and mixed effects |

2013-12-20 | profileR | Profile Analysis of Multivariate Data in R |

2013-12-20 | PST | Probabilistic Suffix Trees and Variable Length Markov Chains |

2013-12-20 | ROCt | Time-dependent ROC curve estimation and adaptation to the relative survival context |

2013-12-19 | AssotesteR | Statistical Tests for Genetic Association Studies |

2013-12-19 | BBRecapture | Bayesian Behavioural Capture-Recapture Models |

2013-12-19 | colortools | Tools for colors in a Hue-Saturation-Value (HSV) color model |

2013-12-19 | minPtest | Gene region-level testing procedure for SNP data, using the min P test resampling approach |

2013-12-19 | robustloggamma | Robust estimation of the generalized log gamma model |

2013-12-19 | tikzDevice | R Graphics Output in LaTeX Format |

2013-12-19 | TilePlot | Characterization of functional genes in complex microbial communities using tiling DNA microarrays |

2013-12-18 | bvls | The Stark-Parker algorithm for bounded-variable least squares |

2013-12-18 | cardidates | Identification of Cardinal Dates in Ecological Time Series |

2013-12-18 | cellVolumeDist | Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |

2013-12-18 | CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |

2013-12-18 | FindMinIC | Find Models with Minimum IC |

2013-12-18 | HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing |

2013-12-18 | maxlike | Model species distributions by estimating the probability of occurrence using presence-only data |

2013-12-18 | mvna | Nelson-Aalen estimator of the cumulative hazard in multistate models |

2013-12-18 | PropClust | Propensity Clustering and Decomposition |

2013-12-18 | RAppArmor | Interfaces to Linux and AppArmor security methods |

2013-12-18 | RcmdrPlugin.lfstat | Rcmdr Plug-In for low flow analysis |

2013-12-18 | scalreg | Scaled sparse linear regression |

2013-12-18 | snowfall | Easier cluster computing (based on snow) |

2013-12-18 | VHDClassification | Discrimination/Classification in very high dimension with linear and quadratic rules |

2013-12-18 | wavelets | A package of functions for computing wavelet filters, wavelet transforms and multiresolution analyses |

2013-12-18 | ycinterextra | Yield curve or zero-coupon prices interpolation and extrapolation |

2013-12-17 | Demerelate | Functions to calculate relatedness on diploid genetic data |

2013-12-17 | fastcluster | Fast hierarchical clustering routines for R and Python |

2013-12-17 | fBonds | Bonds and Interest Rate Models |

2013-12-17 | fExtremes | Rmetrics - Extreme Financial Market Data |

2013-12-17 | g.data | Delayed-Data Packages |

2013-12-17 | iRefR | iRefIndex Manager |

2013-12-17 | reportRx | Tools for automatically generating reproducible clinical report |

2013-12-17 | spacom | Spatially weighted context data for multilevel modelling |

2013-12-16 | highlight | Syntax highlighter |

2013-12-16 | lawstat | An R package for biostatistics, public policy, and law |

2013-12-16 | pbdDMAT | Programming with Big Data – Distributed Matrix Methods |

2013-12-16 | RobRSVD | Robust Regularized Singular Value Decomposition |

2013-12-16 | simone | Statistical Inference for MOdular NEtworks (SIMoNe) |

2013-12-15 | fcd | Fused Community Detection |

2013-12-15 | lpc | Lassoed principal components for testing significance of features |

2013-12-15 | missMDA | Handling missing values with/in multivariate data analysis (principal component methods) |

2013-12-15 | MVB | Mutivariate Bernoulli log-linear model |

2013-12-15 | NetSim | A Social Networks Simulation Tool in R |

2013-12-15 | patchDVI | Package to patch .dvi files |

2013-12-15 | ryouready | Companion to the 'R your ready?' book |

2013-12-15 | scuba | Scuba diving calculations and decompression models |

2013-12-15 | svdvisual | SVD visualization tools |

2013-12-14 | bayesGDS | Functions to implement Generalized Direct Sampling |

2013-12-14 | cocorresp | Co-correspondence analysis methods |

2013-12-14 | DunnettTests | Software implementation of step-down and step-up Dunnett test procedures |

2013-12-14 | EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |

2013-12-14 | fortunes | R Fortunes |

2013-12-14 | ggsubplot | Explore complex data by embedding subplots within plots |

2013-12-14 | JoSAE | Functions for some unit-level small area estimators and their variances |

2013-12-14 | LMERConvenienceFunctions | A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions |

2013-12-14 | MiST | Mixed effects Score Test for continuous outcomes |

2013-12-14 | pbdBASE | Programming with Big Data – Base Wrappers for Distributed Matrices |

2013-12-14 | phyclust | Phylogenetic Clustering (Phyloclustering) |

2013-12-14 | TapeR | Flexible tree taper curves based on semiparametric mixed models |

2013-12-14 | waterData | An R Package for Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data |

2013-12-13 | adhoc | calculate ad hoc distance thresholds for DNA barcoding identification |

2013-12-13 | amei | Adaptive Management of Epidemiological Interventions |

2013-12-13 | clusterPower | Power calculations for cluster-randomized and cluster-randomized crossover trials |

2013-12-13 | geoRglm | geoRglm - a package for generalised linear spatial models |

2013-12-13 | HIV.LifeTables | HIV calibrated model life tables for countries with generalized HIV epidemics |

2013-12-13 | Kmisc | Kevin Miscellaneous |

2013-12-13 | logconcens | Maximum likelihood estimation of a log-concave density based on censored data |

2013-12-13 | MapGAM | Mapping Smoothed Effect Estimates from Individual-Level Data |

2013-12-13 | Oncotree | Estimating oncogenetic trees |

2013-12-13 | PermAlgo | Permutational algorithm to simulate survival data |

2013-12-13 | plfm | Probabilistic latent feature analysis of two-way two-mode frequency data |

2013-12-13 | R0 | Estimation of R0 and real-time reproduction number from epidemics |

2013-12-13 | rphast | R interface to PHAST software for comparative genomics |

2013-12-13 | simctest | Safe implementation of Monte Carlo tests |

2013-12-13 | skda | Sparse (Multicategory) Kernel Discriminant Analysis |

2013-12-13 | survrec | Survival analysis for recurrent event data |

2013-12-12 | BACCO | Bayesian Analysis of Computer Code Output (BACCO) |

2013-12-12 | betapart | Partitioning beta diversity into turnover and nestedness components |

2013-12-12 | CombinS | Constructions method of rectangular PBIB and rectangular right angular PBIB(m) (m= 4,5 and 7) designs |

2013-12-12 | CorrBin | Nonparametrics with clustered binary and multinomial data |

2013-12-12 | dmt | Dependency Modeling Toolkit |

2013-12-12 | gcbd | GPU/CPU Benchmarking in Debian-based systems |

2013-12-12 | languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics" |

2013-12-12 | mleur | Maximum likelihood unit root test |

2013-12-12 | multitable | Simultaneous manipulation of multiple arrays of data, with data.list objects |

2013-12-12 | Myrrix | Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout |

2013-12-12 | npbr | Nonparametric boundary regression |

2013-12-12 | qmrparser | Parser combinator in R |

2013-12-12 | QTLRel | Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree |

2013-12-12 | RcppDE | Global optimization by differential evolution in C++ |

2013-12-12 | rworldmap | Mapping global data, vector and raster |

2013-12-12 | sealasso | Standard Error Adjusted Adaptive Lasso |

2013-12-12 | SeleMix | Selective Editing via Mixture models |

2013-12-12 | synbreedData | Data for the synbreed package |

2013-12-12 | tileHMM | Hidden Markov Models for ChIP-on-Chip Analysis |

2013-12-12 | untb | ecological drift under the UNTB |

2013-12-12 | vegan | Community Ecology Package |

2013-12-11 | aidar | Tools for reading AIDA (http://aida.freehep.org/) files into R |

2013-12-11 | catnet | Categorical Bayesian Network Inference |

2013-12-11 | diffractometry | Baseline identification and peak decomposition for x-ray diffractograms |

2013-12-11 | dtw | Dynamic time warping algorithms |

2013-12-11 | etable | Easy Table |

2013-12-11 | ExPosition | Exploratory analysis with the singular value decomposition |

2013-12-11 | giRaph | The giRaph package for graph representation in R |

2013-12-11 | gmm | Generalized Method of Moments and Generalized Empirical Likelihood |

2013-12-11 | grImport | Importing Vector Graphics |

2013-12-11 | InPosition | Inference Tests for ExPosition |

2013-12-11 | mathgraph | Directed and undirected graphs |

2013-12-11 | mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |

2013-12-11 | mvngGrAd | Software for moving grid adjustment in plant breeding field trials |

2013-12-11 | pgs | Precision of Geometric Sampling |

2013-12-11 | prob | Elementary Probability on Finite Sample Spaces |

2013-12-11 | pvar | p-variation, calculation and application |

2013-12-11 | random | True random numbers using random.org |

2013-12-11 | rhosp | Side effect risks in hospital : simulation and estimation |

2013-12-11 | rpartitions | Code for integer partitioning |

2013-12-11 | rspear | Calculate SPEARpesticide in R (http://www.systemecology.eu/SPEAR/index.php) |

2013-12-11 | selectiongain | A tool for calculation and optimization of the expected gain from multi-stage selection |

2013-12-11 | smfsb | SMfSB 2e: Stochastic Modelling for Systems Biology, second edition |

2013-12-11 | SOAR | Memory management in R by delayed assignments |

2013-12-11 | sphet | Estimation of spatial autoregressive models with and without heteroskedastic innovations |

2013-12-11 | TExPosition | Two-table ExPosition |

2013-12-11 | TInPosition | Inference tests for TExPosition |

2013-12-11 | wle | Weighted Likelihood Estimation |

2013-12-10 | aylmer | A generalization of Fisher's exact test |

2013-12-10 | Bessel | Bessel – Bessel Functions Computations and Approximations |

2013-12-10 | bfp | Bayesian Fractional Polynomials |

2013-12-10 | binomSamSize | Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling |

2013-12-10 | CCM | Correlation classification method (CCM) |

2013-12-10 | cloudUtil | Cloud Util Plots |

2013-12-10 | conics | Plot Conics |

2013-12-10 | corclass | Correlational Class Analysis |

2013-12-10 | CVST | Fast Cross-Validation via Sequential Testing |

2013-12-10 | fTrading | Technical Trading Analysis |

2013-12-10 | fxregime | Exchange Rate Regime Analysis |

2013-12-10 | glmx | Generalized Linear Models Extended |

2013-12-10 | gsl | wrapper for the Gnu Scientific Library |

2013-12-10 | gsscopu | Copula Density and 2-D Hazard Estimation using Smoothing Splines |

2013-12-10 | hyperdirichlet | A generalization of the Dirichlet distribution |

2013-12-10 | iBUGS | An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets |

2013-12-10 | lmm | Linear mixed models |

2013-12-10 | MixSim | Simulating Data to Study Performance of Clustering Algorithms |

2013-12-10 | mlegp | Maximum Likelihood Estimates of Gaussian Processes |

2013-12-10 | pathmox | Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling |

2013-12-10 | prettyGraphs | publication-quality graphics |

2013-12-10 | SII | Calculate ANSI S3.5-1997 Speech Intelligibility Index |

2013-12-10 | sparseLTSEigen | RcppEigen back end for sparse least trimmed squares regression |

2013-12-10 | SPmlficmcm | Semiparametric Maximum likelihood Method for interactions gene-environment in case-mother control-mother designs |

2013-12-10 | tdthap | TDT tests for extended haplotypes |

2013-12-09 | calibrator | Bayesian calibration of complex computer codes |

2013-12-09 | DIME | DIME (Differential Identification using Mixture Ensemble) |

2013-12-09 | geoCount | Analysis and Modeling for Geostatistical Count Data |

2013-12-09 | hypergeo | The hypergeometric function |

2013-12-09 | vrmlgen | Generate 3D visualizations for data exploration on the web |

2013-12-08 | approximator | Bayesian prediction of complex computer codes |

2013-12-08 | discrimARTs | Discrimination of Alternative Reproductive Tactics (ARTs) |

2013-12-08 | partitions | Additive partitions of integers |

2013-12-08 | plspm | Tools for Partial Least Squares Path Modeling (PLS-PM) |

2013-12-08 | zic | Bayesian Inference for Zero-Inflated Count Models |

2013-12-07 | elrm | Exact Logistic Regression via MCMC |

2013-12-07 | hflights | Flights that departed Houston in 2011 |

2013-12-07 | rtfbs | R Transcription Factor Binding Site identification tool |

2013-12-07 | sortinghat | sortinghat |

2013-12-06 | assertthat | Easy pre and post assertions |

2013-12-06 | NADA | Nondetects And Data Analysis for environmental data |

2013-12-06 | NlsyLinks | Utilities and kinship information for behavior genetics and developmental research using the NLSY |

2013-12-05 | Brobdingnag | Very large numbers in R |

2013-12-05 | drsmooth | Dose-Response Modeling with Smoothing Splines |

2013-12-05 | DynamicDistribution | Dynamically visualized probability distributions and their moments |

2013-12-05 | elliptic | elliptic functions |

2013-12-05 | GWAtoolbox | GWAS Quality Control |

2013-12-05 | hddplot | Use known groups in high-dimensional data to derive scores for plots |

2013-12-05 | LDExplorer | Efficient Whole-Genome LD Based Haplotpe Block Recognition |

2013-12-05 | MaXact | Exact max-type Cochran-Armitage trend test(CATT) |

2013-12-05 | multivator | A multivariate emulator |

2013-12-05 | ref | References for R |

2013-12-05 | Sample.Size | Sample size calculation |

2013-12-05 | snpStatsWriter | Flexible writing of snpStats objects to flat files |

2013-12-04 | coalescentMCMC | MCMC Algorithms for the Coalescent |

2013-12-04 | goft | Tests of fit for some probability distributions |

2013-12-04 | label.switching | Relabelling MCMC outputs of mixture models |

2013-12-04 | multgee | GEE Solver for Correlated Nominal or Ordinal Multinomial Responses |

2013-12-04 | npmv | Nonparametric Comparison of Multivariate Samples |

2013-12-04 | obs.agree | An R package to assess agreement between observers |

2013-12-03 | ADM3 | An Interpretation of the ADM method - automated detection algorithm |

2013-12-03 | aspect | Aspects of Multivariables |

2013-12-03 | ClustOfVar | Clustering of variables |

2013-12-03 | DEMEtics | Evaluating the genetic differentiation between populations based on Gst and D values |

2013-12-03 | digest | Create cryptographic hash digests of R objects |

2013-12-03 | ecodist | Dissimilarity-based functions for ecological analysis |

2013-12-03 | Interpol.T | Hourly interpolation of multiple temperature daily series |

2013-12-03 | iplots | iPlots - interactive graphics for R |

2013-12-03 | LogicReg | Logic Regression |

2013-12-03 | mefa | Multivariate Data Handling in Ecology and Biogeography |

2013-12-03 | netClass | netClass: An R Package for Network-Based Biomarker Discovery |

2013-12-03 | png | Read and write PNG images |

2013-12-03 | RCassandra | R/Cassandra interface |

2013-12-03 | weirs | A Hydraulics Package to Compute Open-Channel Flow over Weirs |

2013-12-02 | BCEA | Bayesian Cost Effectiveness Analysis |

2013-12-02 | dvn | Access to The Dataverse Network APIs |

2013-12-02 | FHtest | Tests for right and interval-censored survival data based on the Fleming-Harrington class |

2013-12-02 | GrassmannOptim | Grassmann Manifold Optimization |

2013-12-02 | mRm | An R package for conditional maximum likelihood estimation in mixed Rasch models |

2013-12-02 | OrdNor | Concurrent generation of ordinal and normal data with given correlation matrix and marginal distributions |

2013-12-02 | PoiClaClu | Classification and clustering of sequencing data based on a Poisson model |

2013-12-02 | smaa | Stochastic Multi-criteria Acceptability Analysis |

2013-12-02 | superMDS | Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011) |

2013-12-01 | exptest | Tests for Exponentiality |

2013-12-01 | hergm | Hierarchical Exponential-Family Random Graph Models with Local Dependence |

2013-12-01 | maptpx | MAP estimation of topic models |

2013-12-01 | nCal | Nonlinear Calibration |

2013-11-30 | adephylo | adephylo: exploratory analyses for the phylogenetic comparative method |

2013-11-29 | caper | Comparative Analyses of Phylogenetics and Evolution in R |

2013-11-29 | cycloids | cycloids |

2013-11-29 | drc | Analysis of dose-response curve data |

2013-11-28 | alphahull | Generalization of the convex hull of a sample of points in the plane |

2013-11-28 | aml | Adaptive Mixed LASSO |

2013-11-28 | ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |

2013-11-28 | ergm.userterms | User-specified terms for the statnet suite of packages |

2013-11-28 | hwde | Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci |

2013-11-28 | LCFdata | Data sets for package “LMERConvenienceFunctions” |

2013-11-28 | nodeHarvest | Node Harvest for regression and classification |

2013-11-28 | ROI | R Optimization Infrastructure |

2013-11-28 | ROI.plugin.glpk | ROI-plugin GLPK |

2013-11-28 | ROI.plugin.quadprog | ROI-plugin quadprog |

2013-11-28 | ROI.plugin.symphony | ROI-plugin symphony |

2013-11-28 | statnet.common | Common R Scripts and Utilities Used by the Statnet Project Software |

2013-11-27 | kinfit | Routines for fitting kinetic models to chemical degradation data |

2013-11-27 | prognosticROC | Prognostic ROC curves for evaluating the predictive capacity of a binary test |

2013-11-27 | RECSO | Robust and Efficient Analysis using Control function approach, of a Secondary Outcome |

2013-11-27 | waldwolf | Wald-Wolfowitz trend test |

2013-11-26 | asd | Simulations for adaptive seamless designs |

2013-11-26 | hda | Heteroscedastic Discriminant Analysis |

2013-11-26 | LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |

2013-11-26 | snplist | Tools to create Gene Sets |

2013-11-25 | dils | Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links |

2013-11-25 | FastImputation | Learn from training data then quickly fill in missing data |

2013-11-25 | frontiles | Partial Frontier Efficiency Analysis |

2013-11-25 | humanFormat | Human-friendly formatting functions |

2013-11-25 | intamap | procedures for automated interpolation |

2013-11-24 | boxplotdbl | Double Box Plot for Two-Axes Correlation |

2013-11-24 | bpca | Biplot of Multivariate Data Based on Principal Components Analysis |

2013-11-24 | fdth | Frequency Distribution Tables, Histograms and Poligons |

2013-11-24 | HandTill2001 | Multiple Class Area under ROC Curve |

2013-11-23 | demoKde | Kernel Density Estimation for Demonstration Purposes |

2013-11-23 | growthmodels | Nonlinear Growth Models |

2013-11-22 | BayesXsrc | R Package Distribution of the BayesX C++ Sources |

2013-11-22 | BMS | Bayesian Model Averaging Library |

2013-11-22 | DoubleCone | Test against parametric regression function |

2013-11-22 | GMMBoost | Likelihood-based Boosting for Generalized mixed models |

2013-11-22 | mixer | Random graph clustering |

2013-11-22 | msgpackR | A library to serialize or unserialize data in MessagePack format |

2013-11-21 | BSagri | Statistical methods for safety assessment in agricultural field trials |

2013-11-21 | dbstats | Distance-based statistics (dbstats) |

2013-11-21 | lestat | A package for LEarning STATistics |

2013-11-21 | ncf | spatial nonparametric covariance functions |

2013-11-21 | osmar | OpenStreetMap and R |

2013-11-21 | PubBias | Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53 |

2013-11-20 | ade4 | Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences |

2013-11-20 | ggHorizon | An implementation of Horizon Graph |

2013-11-20 | hypred | Simulation of genomic data in applied genetics |

2013-11-20 | hysteresis | Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses |

2013-11-20 | magic | create and investigate magic squares |

2013-11-20 | MsatAllele | Visualizes the scoring and binning of microsatellite fragment sizes |

2013-11-20 | PearsonDS | Pearson Distribution System |

2013-11-20 | polspline | Polynomial spline routines |

2013-11-20 | sensitivitymv | Sensitivity Analysis in Observational Studies |

2013-11-20 | vegclust | Fuzzy clustering of vegetation data |

2013-11-20 | witness | This package fits eyewitness data using Clark's (2003) WITNESS model |

2013-11-19 | bgmm | Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling |

2013-11-19 | devEMF | EMF graphics output device |

2013-11-19 | gcdnet | LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm |

2013-11-19 | lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |

2013-11-19 | mlDNA | Machine Learning-based Differential Network Analysis of Transcriptome Data |

2013-11-19 | somebm | some Brownian motions simulation functions |

2013-11-19 | VLF | Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records |

2013-11-18 | bigmemory | Manage massive matrices with shared memory and memory-mapped files |

2013-11-18 | codadiags | Markov chain Monte Carlo burn-in based on "bridge" statistics |

2013-11-18 | eqs2lavaan | EQS Output Conversion to lavaan Functions |

2013-11-18 | feature | Feature significance for multivariate kernel density estimation |

2013-11-18 | MetStaT | Statistical metabolomics tools |

2013-11-18 | rbefdata | BEFdata R package |

2013-11-17 | glmmML | Generalized linear models with clustering |

2013-11-17 | MKmisc | Miscellaneous Functions from M. Kohl |

2013-11-17 | RWinEdt | R Interface to WinEdt |

2013-11-17 | vscc | Variable selection for clustering and classification |

2013-11-16 | BCEs0 | Bayesian models for cost-effectiveness analysis in the presence of structural zero costs |

2013-11-16 | contrast | A collection of contrast methods |

2013-11-16 | grade | Binary Grading functions for R |

2013-11-16 | LPCM | Local principal curve methods |

2013-11-16 | MiClip | A Model-based Approach to Identify Binding Sites in CLIP-Seq Data |

2013-11-16 | spBayes | Univariate and Multivariate Spatial-temporal Modeling |

2013-11-15 | avgrankoverlap | Average Rank Overlap |

2013-11-15 | DiceView | Plot methods for computer experiments design and surrogate |

2013-11-15 | DiscriMiner | Tools of the Trade for Discriminant Analysis |

2013-11-15 | OPI | Open Perimetry Interface |

2013-11-15 | PropScrRand | Propensity score methods for assigning treatment in randomized trials |

2013-11-15 | VizOR | Graphical visualization tools for complex observational data with focus on health sciences (VizOR) |

2013-11-14 | maxent | Low-memory Multinomial Logistic Regression with Support for Text Classification |

2013-11-14 | Rvmmin | Variable metric nonlinear function minimization with bounds constraints |

2013-11-14 | tester | Tests and checks characteristics of R objects |

2013-11-13 | diaplt | Beads Summary Plot of Ranges |

2013-11-13 | EMMIXskew | The EM Algorithm and Skew Mixture Distribution |

2013-11-13 | HaploSim | Functions to simulate haplotypes |

2013-11-13 | metacom | Analysis of the 'elements of metacommunity structure' |

2013-11-13 | mreg | Fits regression models when the outcome is partially missing |

2013-11-13 | MVR | Mean-Variance Regularization |

2013-11-13 | PAGWAS | Pathway analysis methods for genomewide association data |

2013-11-13 | Rambo | The Random Subgraph Model |

2013-11-13 | Rsymphony | Symphony in R |

2013-11-13 | StreamMetabolism | Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves |

2013-11-12 | cghseg | Segmentation methods for array CGH analysis |

2013-11-12 | colorfulVennPlot | Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data |

2013-11-12 | distory | Distance Between Phylogenetic Histories |

2013-11-12 | NSM3 | An R package to accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition |

2013-11-12 | ramps | Bayesian Geostatistical Modeling with RAMPS |

2013-11-12 | robustfa | An Object Oriented Solution for Robust Factor Analysis |

2013-11-12 | rtf | Rich Text Format (RTF) Output |

2013-11-11 | clv | Cluster Validation Techniques |

2013-11-11 | GenKern | Functions for generating and manipulating binned kernel density estimates |

2013-11-11 | gWidgetsRGtk2 | Toolkit implementation of gWidgets for RGtk2 |

2013-11-11 | lymphclon | Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |

2013-11-11 | rGammaGamma | Gamma convolutions for methylation array background correction |

2013-11-10 | FusedPCA | Community Detection via Fused Principal Component Analysis |

2013-11-09 | aqfig | Functions to help display air quality model output and monitoring data |

2013-11-09 | dielectric | Defines some physical constants and dielectric functions commonly used in optics, plasmonics |

2013-11-09 | edrGraphicalTools | Provides tools for dimension reduction methods |

2013-11-09 | flexCWM | Flexible Cluster-Weighted Modeling |

2013-11-09 | powerMediation | Power/Sample size calculation for mediation analysis, simple linear regression, logistic regression, or longitudinal study |

2013-11-08 | brglm | Bias reduction in binomial-response generalized linear models |

2013-11-08 | circular | Circular Statistics |

2013-11-08 | CSS | Extract information from an html document with CSS selectors |

2013-11-08 | optextras | A set of tools to support optimization methods (function minimization with at most bounds and masks) |

2013-11-08 | quint | Qualitative Interaction Trees |

2013-11-08 | sampling | Survey Sampling |

2013-11-08 | sdcMicroGUI | Graphical user interface for package sdcMicro |

2013-11-08 | stima | Simultaneous Threshold Interaction Modeling Algorithm |

2013-11-07 | localdepth | Local Depth |

2013-11-07 | pcse | Panel-Corrected Standard Error Estimation in R |

2013-11-07 | PERregress | Regression Functions and Datasets |

2013-11-07 | RNiftyReg | Medical image registration using the NiftyReg library |

2013-11-07 | SPEI | Calculation of the Standardised Precipitation-Evapotranspiration Index |

2013-11-06 | ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |

2013-11-06 | AGSDest | Estimation in adaptive group sequential trials |

2013-11-06 | CPMCGLM | Correction of the pvalue after multiple coding |

2013-11-06 | Hotelling | Hotelling's T-squared test and variants |

2013-11-06 | ISBF | Iterative Selection of Blocks of Features - ISBF |

2013-11-06 | learningr | Data and functions to accompany the book "Learning R" |

2013-11-06 | Rclusterpp | Linkable C++ clustering |

2013-11-06 | reporttools | Generate LaTeX tables of descriptive statistics |

2013-11-06 | RGenetics | R packages for genetics research |

2013-11-06 | sparseHessianFD | Numerical estimation of sparse Hessians using ACM TOMS Algorithm 636 |

2013-11-05 | bigtabulate | table-, tapply-, and split-like functionality for matrix and big.matrix objects |

2013-11-05 | comparison | Multivariate likelihood ratio calculation and evaluation |

2013-11-05 | demi | Differential Expression from Multiple Indicators |

2013-11-05 | EpiContactTrace | Epidemiological tool for contact tracing |

2013-11-05 | glassomix | High dimensional Mixture Graph Models selection |

2013-11-05 | IsoGene | Testing for monotonic relationship between gene expression and doses in a microarray experiment |

2013-11-05 | krm | Kernel-based Regression Models |

2013-11-05 | shinyAce | Ace editor bindings for Shiny |

2013-11-05 | sparseMVN | Multivariate normal functions for sparse covariate and precision matrices |

2013-11-05 | sspline | Smoothing Splines on the Sphere |

2013-11-04 | BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |

2013-11-04 | crp.CSFP | CreditRisk+ portfolio model |

2013-11-04 | gskat | GEE_KM |

2013-11-04 | isva | Independent Surrogate Variable Analysis |

2013-11-04 | ktsolve | Configurable function for solving families of nonlinear equations |

2013-11-04 | matie | Measuring Association and Testing Independence Efficiently |

2013-11-04 | mvShapiroTest | Generalized Shapiro-Wilk test for multivariate normality |

2013-11-04 | smam | Statistical Modeling of Animal Movements |

2013-11-04 | someMTP | Some Multiple Testing Procedures |

2013-11-04 | termstrc | Zero-coupon Yield Curve Estimation |

2013-11-03 | kernlab | Kernel-based Machine Learning Lab |

2013-11-03 | MonoPoly | Functions to fit monotone polynomials |

2013-11-03 | pedigree | Pedigree functions |

2013-11-02 | BayesCR | Bayesian analysis of censored linear regression models with scale mixtures of normal (SMN) distributions |

2013-11-02 | prinsimp | Finding and plotting simple basis vectors for multivariate data |

2013-11-02 | RCPmod | Regions of common profiles modelling with mixtures-of-experts |

2013-11-01 | ccaPP | (Robust) canonical correlation analysis via projection pursuit |

2013-11-01 | PAGI | The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways |

2013-11-01 | rgcvpack | R Interface for GCVPACK Fortran Package |

2013-10-31 | ACD | Categorical data analysis with complete or missing responses |

2013-10-31 | CIFsmry | Weighted summary of cumulative incidence functions |

2013-10-31 | DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |

2013-10-31 | gllm | Generalised log-linear model |

2013-10-31 | lmf | Functions for estimation and inference of selection in age-structured populations |

2013-10-31 | MRsurv | A multiplicative-regression model for relative survival |

2013-10-31 | sExtinct | Calculates the historic date of extinction given a series of sighting events |

2013-10-31 | SpatialNP | Multivariate nonparametric methods based on spatial signs and ranks |

2013-10-31 | varSelectIP | Objective Bayes Model Selection |

2013-10-30 | mbbefd | MBBEFD distribution and exposure curve |

2013-10-30 | RCircos | Circos 2D Track Plot |

2013-10-30 | RVsharing | RVsharing |

2013-10-30 | SuppDists | Supplementary distributions |

2013-10-29 | cccd | Class Cover Catch Digraphs |

2013-10-29 | cluster.datasets | Cluster Analysis Data Sets |

2013-10-29 | gWidgets2RGtk2 | Implementation of gWidgets2 for RGtk2 package |

2013-10-29 | gWidgets2tcltk | Toolkit implementation of gWidgets2 for tcltk package |

2013-10-29 | Matching | Multivariate and Propensity Score Matching with Balance Optimization |

2013-10-29 | strucchange | Testing, Monitoring, and Dating Structural Changes |

2013-10-29 | TraMineRextras | Extras for use with the TraMineR package |

2013-10-28 | BayesSAE | Bayesian Analysis of Small Area Estimation |

2013-10-28 | erboost | Nonparametric Multiple Expectile Regression via ER-Boost |

2013-10-28 | fingerprint | Functions to operate on binary fingerprint data |

2013-10-28 | IPSUR | Introduction to Probability and Statistics Using R |

2013-10-27 | mar1s | Multiplicative AR(1) with Seasonal Processes |

2013-10-26 | bcpa | Behavioral change point analysis of animal movement |

2013-10-26 | cgwtools | My collection of useful tools |

2013-10-26 | clpAPI | R Interface to C API of COIN-OR Clp |

2013-10-26 | testit | A simple package for testing R packages |

2013-10-25 | CARrampsOcl | Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation |

2013-10-25 | DCL | Claims Reserving under the Double Chain Ladder Model |

2013-10-25 | dgof | Discrete Goodness-of-Fit Tests |

2013-10-25 | hdlm | Fitting High Dimensional Linear Models |

2013-10-25 | kmconfband | Kaplan-Meier Simultaneous Confidence Band for the Survivor Function |

2013-10-25 | SPARQL | SPARQL client |

2013-10-24 | BASIX | BASIX: An efficient C/C++ toolset for R |

2013-10-24 | fastcox | Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm |

2013-10-24 | mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |

2013-10-24 | sybilEFBA | Using gene expression data to improve flux balance analysis predictions |

2013-10-23 | fbRanks | Association Football (Soccer) Ranking via Poisson Regression |

2013-10-23 | globalGSA | Global Gene-Set Analysis for Association Studies |

2013-10-23 | MFHD | Multivariate Functional Halfspace Depth |

2013-10-23 | pairwiseCI | Confidence intervals for two sample comparisons |

2013-10-23 | RForcecom | RForcecom provides the connection to Force.com and Salesforce.com from R |

2013-10-22 | ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |

2013-10-22 | crch | Censored Regression with Conditional Heteroscedasticity |

2013-10-22 | directPA | Direction Pathway Analysis |

2013-10-22 | HDtweedie | The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm |

2013-10-22 | maxLik | Maximum Likelihood Estimation |

2013-10-22 | Rmisc | Rmisc: Ryan Miscellaneous |

2013-10-22 | smart | Sparse Multivariate Analysis via Rank Transformation |

2013-10-22 | snapshot | Gadget N-body cosmological simulation code snapshot I/O utilities |

2013-10-22 | sphereplot | Spherical plotting |

2013-10-22 | sss | Tools for importing files in the triple-s .(Standard Survey Structure) format |

2013-10-22 | surveydata | Tools to manipulate survey data |

2013-10-21 | evobiR | evobiR: evolutionary biology in R |

2013-10-21 | lomb | Lomb-Scargle Periodogram |

2013-10-21 | mQTL | Metabolomic Quantitative Trait Locus Mapping |

2013-10-21 | wavethresh | Wavelets statistics and transforms |

2013-10-20 | RRF | Regularized Random Forest |

2013-10-19 | ACNE | Affymetrix SNP probe-summarization using non-negative matrix factorization |

2013-10-19 | hdrcde | Highest density regions and conditional density estimation |

2013-10-19 | RIGHT | R Interactive Graphics via HTml |

2013-10-18 | datautils | Support functions for packages VBmix, semisupKernelPCA, and patchPlot |

2013-10-18 | locits | Test of stationarity and localized autocovariance |

2013-10-18 | RcmdrPlugin.UCA | UCA Rcmdr Plug-in |

2013-10-17 | aroma.cn | Copy-number analysis of large microarray data sets |

2013-10-17 | calmate | CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation |

2013-10-17 | knitrBootstrap | Knitr Bootstrap framework |

2013-10-17 | OIsurv | Survival analysis supplement to OpenIntro guide |

2013-10-17 | Rcell | Microscopy Based Cytometry Data Analysis Package |

2013-10-17 | RTConnect | Tools for analyzing sales report files of iTunes Connect |

2013-10-16 | DAAGxtras | Data Sets and Functions, supplementary to DAAG |

2013-10-16 | lxb | Fast LXB file reader |

2013-10-16 | NormalGamma | Normal-gamma convolution model |

2013-10-16 | regpro | Nonparametric Regression |

2013-10-15 | corrplot | Visualization of a correlation matrix |

2013-10-15 | cvq2 | Calculate the predictive squared correlation coefficient |

2013-10-15 | Segmentor3IsBack | A Fast Segmentation Algorithm |

2013-10-15 | zoom | A spatial data visualization tool |

2013-10-14 | costat | Time series costationarity determination |

2013-10-14 | EMMAgeo | End-member modelling algorithm and supporting functions for grain-size analysis |

2013-10-13 | assertive | Readable check functions to ensure code integrity |

2013-10-13 | Correlplot | A collection of functions for graphing correlation matrices |

2013-10-13 | shinyRGL | Shiny Wrappers for RGL |

2013-10-12 | cpa | Confirmatory Path Analysis through the d-sep tests |

2013-10-12 | FITSio | FITS (Flexible Image Transport System) utilities |

2013-10-12 | mcGlobaloptim | Global optimization using Monte Carlo and Quasi Monte Carlo simulation |

2013-10-12 | phia | Post-Hoc Interaction Analysis |

2013-10-12 | rdd | Regression Discontinuity Estimation |

2013-10-12 | rsig | Robust Signature Selection for Survival Outcomes |

2013-10-12 | symbolicDA | Analysis of symbolic data |

2013-10-11 | GlobalDeviance | Global Deviance Permutation Tests |

2013-10-11 | ICS | Tools for Exploring Multivariate Data via ICS/ICA |

2013-10-11 | LOST | Missing morphometric data simulation and estimation |

2013-10-11 | MRwarping | Multiresolution time warping for functional data |

2013-10-11 | OptHedging | Estimation of value and hedging strategy of call and put options |

2013-10-11 | orsk | Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information |

2013-10-11 | RcmdrPlugin.HH | Rcmdr support for the HH package |

2013-10-10 | incReg | Incremental Multivariate Regression |

2013-10-10 | MCPAN | Multiple comparisons using normal approximation |

2013-10-10 | rseedcalc | Estimating the proportion of genetically modified stacked seeds in seedlots via multinomial group testing |

2013-10-10 | TestSurvRec | Statistical tests to compare two survival curves with recurrent events |

2013-10-09 | binMto | Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions |

2013-10-09 | gProfileR | R interface to the g:Profiler toolkit |

2013-10-09 | popsom | Self-Organizing Maps With Population Based Convergence Criterion |

2013-10-09 | ScrabbleScore | Calculates Scrabble score for strings |

2013-10-08 | bmem | Mediation analysis with missing data using bootstrap |

2013-10-08 | caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |

2013-10-08 | RenextGUI | GUI for Renext |

2013-10-07 | censNID | censored NID samples |

2013-10-07 | migration.indices | Migration indices |

2013-10-05 | cold | cold: a package for Count Longitudinal Data |

2013-10-05 | DAAGbio | Data Sets and Functions, for demonstrations with expression arrays and gene sequences |

2013-10-05 | fdrci | Permutation-based FDR Point and Confidence Interval Estimation |

2013-10-05 | servr | A simple HTTP server in R |

2013-10-04 | ICC | Functions facilitating the estimation of the Intraclass Correlation Coefficient |

2013-10-04 | kitagawa | Spectral response of water wells to harmonic strain and pressure |

2013-10-04 | Renext | Renewal method for extreme values extrapolation |

2013-10-04 | TDD | Time-Domain Deconvolution of Seismometer Response |

2013-10-03 | daewr | Design and Analysis of Experiments with R |

2013-10-03 | ggmcmc | Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference |

2013-10-03 | HEAT | Health Effects of Air Pollution and Temperature (HEAT) |

2013-10-03 | powerAnalysis | Power analysis in experimental design |

2013-10-03 | proftools | Profile Output Processing Tools for R |

2013-10-03 | riv | Robust instrumental variables estimator |

2013-10-03 | sparseBC | Sparse biclustering of transposable data |

2013-10-02 | SpeciesMix | Fit Mixtures of Archetype species |

2013-10-01 | dcmle | Hierarchical Models Made Easy with Data Cloning |

2013-10-01 | IsotopeR | Stable isotope analysis |

2013-10-01 | kulife | Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen |

2013-10-01 | multitaper | Multitaper spectral analysis tools |

2013-10-01 | PsumtSim | Simulations of grouped responses relative to baseline |

2013-09-30 | AUC | Threshold independent performance measures for probabilistic classifiers |

2013-09-30 | colorspace | Color Space Manipulation |

2013-09-30 | dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |

2013-09-30 | LCA | Localised Co-Dependency Analysis |

2013-09-30 | ordinal | Regression Models for Ordinal Data |

2013-09-30 | ParentOffspring | Conduct the Parent-Offspring Test Using Monomorphic SNP Markers |

2013-09-30 | plan | Tools for project planning |

2013-09-30 | topsis | TOPSIS method for multiple-criteria decision making (MCDM) |

2013-09-29 | coloc | Colocalisation tests of two genetic traits |

2013-09-29 | elliplot | Ellipse Summary Plot of Quantiles |

2013-09-29 | TScompare | TSdbi Comparison |

2013-09-29 | TSdata | TSdbi Illustration |

2013-09-29 | TSdbi | TSdbi (Time Series Database Interface) |

2013-09-29 | TSfame | TSdbi extensions for fame |

2013-09-29 | TSgetSymbol | TSdbi extension to connect with getSymbols |

2013-09-29 | TShistQuote | TSdbi extensions for get.hist.quote |

2013-09-29 | TSMySQL | TSdbi extensions for MySQL |

2013-09-29 | TSodbc | TSdbi extensions for ODBC |

2013-09-29 | TSPostgreSQL | TSdbi extensions for PostgreSQL |

2013-09-29 | TSSQLite | TSdbi extensions for SQLite |

2013-09-29 | TSxls | TSdbi extension to connect to spreadsheets |

2013-09-29 | TSzip | TSdbi extension to connect to zip files |

2013-09-28 | adagio | Discrete and Global Optimization Routines |

2013-09-27 | BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |

2013-09-27 | FitARMA | FitARMA: Fit ARMA or ARIMA using fast MLE algorithm |

2013-09-27 | MRMR | Multivariate Regression Models for Reserving |

2013-09-27 | pan | Multiple imputation for multivariate panel or clustered data |

2013-09-27 | rDNA | R Bindings for the Discourse Network Analyzer |

2013-09-27 | snow | Simple Network of Workstations |

2013-09-26 | simecol | Simulation of ecological (and other) dynamic systems |

2013-09-26 | spsurvey | Spatial Survey Design and Analysis |

2013-09-26 | ssvd | Sparse SVD |

2013-09-25 | sos | Search contributed R packages, sort by package |

2013-09-25 | SubCultCon | Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures |

2013-09-25 | wgsea | Wilcoxon based gene set enrichment analysis |

2013-09-24 | asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |

2013-09-24 | diffEq | Functions from the book Solving Differential Equations in R |

2013-09-24 | enRich | An R package for the analysis of multiple ChIP-seq data |

2013-09-24 | exactRankTests | Exact Distributions for Rank and Permutation Tests |

2013-09-24 | isa2 | The Iterative Signature Algorithm |

2013-09-24 | Map2NCBI | Mapping Markers to the Nearest Genomic Feature |

2013-09-24 | NPHMC | Sample Size Calculation for the Proportional Hazards Mixture Cure Model |

2013-09-24 | popReconstruct | Reconstruct population counts, fertility, mortality and migration rates of human populations of the recent past |

2013-09-24 | tframePlus | Time Frame coding kernel extensions |

2013-09-23 | adehabitatMA | Tools to Deal with Raster Maps |

2013-09-23 | animalTrack | Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data |

2013-09-23 | EffectsRelBaseline | Test changes of a grouped response relative to baseline |

2013-09-23 | GUIDE | GUI for DErivatives in R |

2013-09-23 | hzar | Hybrid Zone Analysis using R |

2013-09-23 | LSMonteCarlo | American options pricing with Least Squares Monte Carlo method |

2013-09-23 | quantreg | Quantile Regression |

2013-09-23 | SAMURAI | Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations |

2013-09-23 | ZeligChoice | Zelig Choice Models |

2013-09-23 | ZeligGAM | General Additive Models for Zelig |

2013-09-23 | ZeligMultilevel | Multilevel Regressions for Zelig |

2013-09-22 | AtelieR | A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests |

2013-09-22 | bootfs | Use multiple feature selection algorithms to derive robust feature sets for two or multiclass classification problems |

2013-09-22 | lazy | Lazy Learning for Local Regression |

2013-09-22 | MVPARTwrap | MVPARTwrap: Additional features for package mvpart |

2013-09-22 | R2admb | ADMB to R interface functions |

2013-09-21 | boss | Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS |

2013-09-21 | cocor | Comparing correlations |

2013-09-21 | cocron | Statistical comparisons of two or more alpha coefficients |

2013-09-21 | CrypticIBDcheck | Identifying cryptic relatedness in genetic association studies |

2013-09-21 | dataQualityR | Performs variable level data quality checks and generates summary statistics |

2013-09-21 | gmodels | Various R programming tools for model fitting |

2013-09-21 | LDheatmap | Graphical display of pairwise linkage disequilibria between SNPs |

2013-09-21 | longpower | Sample size calculations for longitudinal data |

2013-09-21 | phmm | Proportional Hazards Mixed-effects Model (PHMM) |

2013-09-21 | Zelig | Everyone's Statistical Software |

2013-09-20 | beeswarm | The bee swarm plot, an alternative to stripchart |

2013-09-20 | svapls | Surrogate variable analysis using partial least squares in a gene expression study |

2013-09-20 | TriMatch | Propensity Score Matching of Non-Binary Treatments |

2013-09-19 | Biograph | Explore life histories |

2013-09-19 | CNVassoc | Association analysis of CNV data |

2013-09-19 | fail | File Abstraction Interface Layer (FAIL) mimicking a key-value store |

2013-09-19 | genMOSS | Functions for the Bayesian analysis of GWAS data |

2013-09-19 | pheatmap | Pretty Heatmaps |

2013-09-19 | prLogistic | Estimation of Prevalence Ratios using Logistic Models |

2013-09-19 | qtlhot | Inference for QTL Hotspots |

2013-09-19 | zyp | Zhang + Yue-Pilon trends package |

2013-09-18 | Dodge | Functions for Acceptance Sampling Ideas originated by H.F. Dodge |

2013-09-18 | dynaTree | Dynamic trees for learning and design |

2013-09-17 | cgdsr | R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS) |

2013-09-17 | GABi | Framework for Generalized Subspace Pattern Mining |

2013-09-16 | akima | Interpolation of irregularly spaced data |

2013-09-16 | HMPTrees | Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison |

2013-09-16 | R4dfp | 4dfp MRI Image Read and Write Routines |

2013-09-16 | SMCRM | Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012) |

2013-09-16 | speccalt | Alternative spectral clustering, with automatic estimation of k |

2013-09-16 | tripack | Triangulation of irregularly spaced data |

2013-09-16 | yhat | Interpreting Regression Effects |

2013-09-15 | forensim | Statistical tools for the interpretation of forensic DNA mixtures |

2013-09-15 | GPCSIV | GPCSIV, Generalized Principal Component of Symbolic Interval variables |

2013-09-14 | EILA | Efficient Inference of Local Ancestry |

2013-09-14 | RcmdrPlugin.qual | Rcmdr plugin for quality control course |

2013-09-14 | RobRex | Optimally robust influence curves for regression and scale |

2013-09-14 | ROptRegTS | Optimally robust estimation for regression-type models |

2013-09-13 | CLAG | An unsupervised non hierarchical clustering algorithm handling biological data |

2013-09-13 | Daim | Diagnostic accuracy of classification models |

2013-09-13 | distrDoc | Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse |

2013-09-13 | distrEllipse | S4 classes for elliptically contoured distributions |

2013-09-13 | distrEx | Extensions of package distr |

2013-09-13 | distrRmetrics | Package distr classes for distributions from Rmetrics |

2013-09-13 | distrTeach | Extensions of package distr for teaching Stochastics/Statistics in secondary school |

2013-09-13 | distrTEst | Estimation and Testing classes based on package distr |

2013-09-13 | EcoTroph | EcoTroph R package |

2013-09-13 | ez | Easy analysis and visualization of factorial experiments |

2013-09-13 | labdsv | Ordination and Multivariate Analysis for Ecology |

2013-09-13 | papeR | A toolbox for writing Sweave or other LaTeX-based papers and reports |

2013-09-13 | rbiouml | Functions to interact with BioUML server |

2013-09-13 | RobAStBase | Robust Asymptotic Statistics |

2013-09-13 | RobLox | Optimally robust influence curves and estimators for location and scale |

2013-09-13 | RobLoxBioC | Infinitesimally robust estimators for preprocessing omics data |

2013-09-13 | ROptEst | Optimally robust estimation |

2013-09-13 | ROptEstOld | Optimally robust estimation - old version |

2013-09-13 | startupmsg | Utilities for start-up messages |

2013-09-12 | distrMod | Object oriented implementation of probability models |

2013-09-12 | distrSim | Simulation classes based on package distr |

2013-09-12 | logcondens.mode | Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode |

2013-09-12 | MLRMPA | A package for Multilinear Regression Model Population Analysis |

2013-09-12 | optpart | Optimal partitioning of similarity relations |

2013-09-12 | phalen | Phalen Algorithms and Functions |

2013-09-11 | pastis | Phylogenetic Assembly with Soft Taxonomic Inferences |

2013-09-11 | RandVar | Implementation of random variables |

2013-09-11 | relaimpo | Relative importance of regressors in linear models |

2013-09-10 | calibrate | Calibration of Scatterplot and Biplot Axes |

2013-09-10 | FREQ | FREQ: Estimate population size from capture frequencies |

2013-09-10 | NEff | Calculating effective sizes based on known demographic parameters of a population |

2013-09-10 | psidR | Build panel data sets from PSID raw data |

2013-09-10 | PSM | Non-Linear Mixed-Effects modelling using Stochastic Differential Equations |

2013-09-10 | rgrs | Functions to make R usage in social sciences easier (in french) |

2013-09-10 | rknn | Random KNN Classification and Regression |

2013-09-10 | smdata | Data to accompany Smithson & Merkle, 2013 |

2013-09-10 | splusTimeSeries | Time Series from S-PLUS |

2013-09-09 | camel | Calibrated Machine Learning |

2013-09-09 | DendSer | Dendrogram seriation: ordering for visualisation |

2013-09-09 | onemap | Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses |

2013-09-08 | RMongo | MongoDB Client for R |

2013-09-08 | ttwa | Travel To Work Area |

2013-09-07 | ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |

2013-09-06 | NMOF | Numerical Methods and Optimization in Finance |

2013-09-05 | CommonTrend | Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics |

2013-09-05 | excel.link | Convenient way to work with data in Microsoft Excel |

2013-09-05 | G1DBN | A package performing Dynamic Bayesian Network inference |

2013-09-05 | openNLPdata | Apache OpenNLP Jars and Basic English Language Models |

2013-09-05 | survPresmooth | Presmoothed Estimation in Survival Analysis |

2013-09-04 | kelvin | Calculate solutions to the Kelvin differential equation using Bessel functions |

2013-09-04 | laser | Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |

2013-09-04 | pavo | Perceptual analysis, visualization and organization of spectral color data in R |

2013-09-04 | PF | Prevented fraction |

2013-09-04 | rio | A Swiss-army knife for data file I/O |

2013-09-04 | tiff | Read and write TIFF images |

2013-09-04 | uuid | Tools for generating and handling of UUIDs |

2013-09-03 | BCDating | Business Cycle Dating and Plotting Tools - BCDating |

2013-09-03 | expoTree | Calculate density dependent likelihood of a phylogenetic tree |

2013-09-03 | genetics | Population Genetics |

2013-09-03 | inlinedocs | Convert inline comments to documentation |

2013-09-03 | RFGLS | Rapid Feasible Generalized Least Squares |

2013-09-03 | sparc | Semiparametric Generalized Linear Models |

2013-09-02 | ibr | Iterative Bias Reduction |

2013-09-02 | modeltools | Tools and Classes for Statistical Models |

2013-09-02 | scrime | Analysis of High-Dimensional Categorical Data such as SNP Data |

2013-09-02 | tabplotd3 | Tabplotd3, interactive inspection of large data |

2013-09-01 | classInt | Choose univariate class intervals |

2013-08-31 | Grid2Polygons | Convert Spatial Grids to Polygons |

2013-08-31 | hisemi | Hierarchical Semiparametric Regression of Test Statistics |

2013-08-31 | lrmest | Different types of estimators to deal with multicollinearity |

2013-08-31 | minpack.lm | R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds |

2013-08-31 | varComp | Variance component models |

2013-08-30 | fExpressCertificates | fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables |

2013-08-30 | genMOSSplus | Application of MOSS algorithm to genome-wide association study (GWAS) |

2013-08-30 | getopt | C-like getopt behavior |

2013-08-29 | automap | Automatic interpolation package |

2013-08-29 | rrcovHD | Robust multivariate Methods for High Dimensional Data |

2013-08-29 | rrcovNA | Scalable Robust Estimators with High Breakdown Point for Incomplete Data |

2013-08-28 | mmap | Map Pages of Memory |

2013-08-28 | rainbow | Rainbow plots, bagplots and boxplots for functional data |

2013-08-28 | RStorm | Simulate and Develop Streaming Processing in [R] |

2013-08-27 | EMVC | Entropy Minimization over Variable Clusters (EMVC) |

2013-08-27 | soil.spec | Soil spectral file conversion, data exploration and regression functions |

2013-08-27 | VaRES | Computes value at risk and expected shortfall for over 100 parametric distributions |

2013-08-26 | dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample entropy |

2013-08-26 | epoc | EPoC (Endogenous Perturbation analysis of Cancer) |

2013-08-26 | rehh | Searching for footprints of selection using Haplotype Homozygosity based tests |

2013-08-26 | rrcov | Scalable Robust Estimators with High Breakdown Point |

2013-08-26 | SML | Statistical Machine Learning |

2013-08-24 | soilprofile | A package to consistently represent soil properties along a soil profile |

2013-08-23 | corTools | Tools for processing data after a Genome Wide Association Study |

2013-08-23 | muRL | Mailmerge using R, LaTeX, and the Web |

2013-08-23 | RcmdrPlugin.sampling | Tools for sampling in Official Statistical Surveys |

2013-08-23 | rtematres | The rtematres API package |

2013-08-23 | spaa | SPecies Association Analysis |

2013-08-23 | tlemix | Trimmed Maximum Likelihood Estimation |

2013-08-22 | fds | Functional data sets |

2013-08-22 | GeoXp | Interactive exploratory spatial data analysis |

2013-08-22 | HSROC | Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test |

2013-08-22 | Rjpstatdb | R interface of the Gateway to Advanced and User-friendly Statistics Service |

2013-08-22 | smss | Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences" |

2013-08-22 | ssfit | Fitting of parametric models using summary statistics |

2013-08-22 | StatDA | Statistical Analysis for Environmental Data |

2013-08-21 | intamapInteractive | procedures for automated interpolation - methods only to be used interactively, not included in intamap package |

2013-08-21 | kmlcov | Clustering longitudinal data using the likelihood as a metric of distance |

2013-08-21 | RepeatedHighDim | Global tests for expression data of high-dimensional sets of molecular features |

2013-08-21 | Rserve | Binary R server |

2013-08-21 | SOLOMON | Parentage analysis |

2013-08-21 | specificity | Specificity of personality trait-outcome (or trait-trait) associations |

2013-08-21 | spls | Sparse Partial Least Squares (SPLS) Regression and Classification |

2013-08-20 | CellularAutomaton | One-Dimensional Cellular Automata |

2013-08-20 | censReg | Censored Regression (Tobit) Models |

2013-08-20 | frontier | Stochastic Frontier Analysis |

2013-08-20 | ggparallel | Variations of Parallel Coordinate Plots for Categorical Data |

2013-08-20 | Newdistns | Computes pdf, cdf, quantile and random numbers for 19 general families of distributions |

2013-08-20 | phenmod | Auxiliary functions for phenological data processing, modelling and result handling |

2013-08-20 | Rpoppler | PDF tools based on Poppler |

2013-08-20 | SEchart | SEchart |

2013-08-20 | WDI | World Development Indicators (World Bank) |

2013-08-19 | BRugs | R interface to the OpenBUGS MCMC software |

2013-08-19 | protiq | Protein (identification and) quantification based on peptide evidence |

2013-08-19 | R2BayesX | Estimate Structured Additive Regression Models with BayesX |

2013-08-19 | SeqGrapheR | Simple GUI for graph based visualization of cluster of DNA sequence reads |

2013-08-19 | SynchWave | Synchrosqueezed Wavelet Transform |

2013-08-19 | vwr | Useful functions for visual word recognition research |

2013-08-17 | bitops | Bitwise Operations |

2013-08-17 | condGEE | Parameter estimation in conditional GEE for recurrent event gap times |

2013-08-17 | glinternet | Learning interactions via hierarchical group-lasso regularization |

2013-08-17 | mda | Mixture and flexible discriminant analysis |

2013-08-17 | mixsmsn | Fitting finite mixture of scale mixture of skew-normal distributions |

2013-08-17 | profileModel | Tools for profiling inference functions for various model classes |

2013-08-16 | adabag | Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging |

2013-08-16 | blm | Binomial linear and linear-expit regression |

2013-08-16 | CNVassocData | Example data sets for association analysis of CNV data |

2013-08-16 | JOP | Joint Optimization Plot |

2013-08-16 | PCS | Calculate the probability of correct selection (PCS) |

2013-08-16 | relaxnet | Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007) |

2013-08-16 | SEMID | Identifiability of linear structural equation models |

2013-08-15 | bvpSolve | Solvers for boundary value problems of ordinary differential equations |

2013-08-15 | conjoint | Conjoint analysis package |

2013-08-15 | latticeExtra | Extra Graphical Utilities Based on Lattice |

2013-08-14 | complex.surv.dat.sim | Simulation of complex survival data |

2013-08-14 | covTest | Computes covariance test for adaptive linear modelling |

2013-08-14 | IntLik | Numerical Integration for Integrated Likelihood |

2013-08-13 | autopls | pls regression with backward selection of predictors |

2013-08-13 | ddepn | Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data |

2013-08-13 | denpro | Visualization of multivariate, functions, sets, and data |

2013-08-13 | EasyHTMLReport | EasyHTMLReport |

2013-08-13 | ES | Edge Selection |

2013-08-13 | PAS | Polygenic Analysis System (PAS) |

2013-08-13 | RFinanceYJ | RFinanceYJ |

2013-08-12 | Rarity | Calculation of rarity indices for species and assemblages of species |

2013-08-12 | rLindo | R Interface to LINDO API |

2013-08-12 | rminer | Simpler use of data mining methods (e.g. NN and SVM) in classification and regression |

2013-08-12 | SpatioTemporal | Spatio-Temporal Model Estimation |

2013-08-10 | bmp | Read Windows Bitmap (BMP) images |

2013-08-10 | celestial | Collection of common astronomical conversion routines |

2013-08-10 | PK | Basic Non-Compartmental Pharmacokinetics |

2013-08-10 | pls | Partial Least Squares and Principal Component regression |

2013-08-10 | rzmq | R binding for zmq (http://www.zeromq.org/) |

2013-08-09 | inline | Inline C, C++, Fortran function calls from R |

2013-08-09 | mallet | A wrapper around the Java machine learning tool MALLET |

2013-08-09 | NPMLEcmprsk | Non-parametric Maximum-Likelihood Estimation for Competing-Risks Data |

2013-08-09 | optimx | A Replacement and Extension of the optim() Function |

2013-08-09 | sidier | SIDIER: Substitution and Indel Distances to Infer Evolutionary Relationships |

2013-08-08 | DMwR | Functions and data for "Data Mining with R" |

2013-08-08 | gb | Generalize Lambda Distribution and Generalized Bootstrapping |

2013-08-08 | gRim | Graphical Interaction Models |

2013-08-08 | miRada | MicroRNA Microarray Data Analysis |

2013-08-08 | SPMS | Sub-Pathway Mining Software |

2013-08-08 | spt | Sierpinski Pedal Triangle |

2013-08-07 | DiscreteWeibull | Discrete Weibull distribution |

2013-08-07 | IASD | Model selection for index of asymmetry distribution |

2013-08-07 | memuse | Estimate the memory usage of dense, in-core, numeric objects |

2013-08-06 | dupiR | Bayesian inference from count data using discrete uniform priors |

2013-08-06 | fanc | Penalized likelihood factor analysis via nonconvex penalty |

2013-08-05 | coarseDataTools | A collection of functions to help with analysis of coarsely observed data |

2013-08-04 | CompLognormal | Functions for actuarial scientists |

2013-08-04 | DierckxSpline | R companion to "Curve and Surface Fitting with Splines" |

2013-08-04 | lmeSplines | Add smoothing spline modelling capability to nlme |

2013-08-04 | nlmeU | Datasets and utility functions enhancing functionality of nlme package |

2013-08-03 | tipom | Automated measure-based classification for flint tools |

2013-08-03 | visualize | Graph Probability Distributions with User Supplied Parameters and Stats |

2013-08-02 | AMGET | Post-processing tool for ADAPT 5 |

2013-08-02 | dfcrm | Dose-finding by the continual reassessment method |

2013-08-02 | ltsbase | Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |

2013-08-02 | RSclient | Client for Rserve |

2013-08-02 | sme | Smoothing-splines Mixed-effects Models |

2013-08-02 | timesboot | Bootstrap computations for time series objects |

2013-08-01 | BNPdensity | Ferguson-Klass type algorithm for posterior normalized random measures |

2013-08-01 | compactr | Creates empty plots with compact axis notation |

2013-08-01 | nricens | NRI for risk prediction models with time to event and binary response data |

2013-08-01 | rbmn | Handling Linear Gaussian Bayesian Networks |

2013-07-31 | acopula | Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas |

2013-07-31 | FNN | Fast Nearest Neighbor Search Algorithms and Applications |

2013-07-31 | gPCA | Batch Effect Detection via Guided Principal Components Analysis |

2013-07-31 | needy | needy |

2013-07-31 | recluster | Ordination methods for the analysis of beta-diversity indices |

2013-07-31 | SparseGrid | Sparse grid integration in R |

2013-07-30 | COBRA | Nonlinear Aggregation of Predictors |

2013-07-30 | epr | Easy polynomial regression |

2013-07-30 | Lambda4 | Collection of Internal Consistency Reliability Coefficients |

2013-07-29 | bibtex | bibtex parser |

2013-07-29 | gcmr | Gaussian Copula Marginal Regression |

2013-07-29 | pathdiagram | Basic functions for drawing path diagrams |

2013-07-29 | robeth | R functions for robust statistics |

2013-07-29 | SimultAnR | Correspondence and Simultaneous Analysis |

2013-07-29 | widenet | Penalized Regression with Polynomial Basis Expansions |

2013-07-28 | MPINet | The package can implement the network-based metabolite pathway identification of pathways |

2013-07-28 | ppiPre | Predict protein-protein interactions based on functional and topological similarities |

2013-07-28 | pwt | Penn World Table (Versions 5.6, 6.x, 7.x) |

2013-07-28 | pwt8 | Penn World Table (Version 8.0) |

2013-07-28 | Rz | GUI Tool for Data Management like SPSS or Stata |

2013-07-27 | eigenprcomp | Computes confidence intervals for principal components |

2013-07-26 | crawl | Fit continuous-time correlated random walk models to animal movement data |

2013-07-26 | ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |

2013-07-26 | Myrrixjars | External jars required for package Myrrix |

2013-07-26 | Nippon | Japanese utility functions and data |

2013-07-26 | RInSp | R Individual Specialization (RInSp) package |

2013-07-25 | AnDE | An extended Bayesian Learning Technique developed by Dr. Geoff Webb |

2013-07-25 | gains | Gains Table Package |

2013-07-24 | HapEstXXR | Multi-locus stepwise regression (MSR) |

2013-07-24 | hint | Tools for hypothesis testing based on Hypergeometric Intersection distributions |

2013-07-24 | jtrans | Johnson transformation for normality |

2013-07-24 | RGCCA | RGCCA and Sparse GCCA for multi-block data analysis |

2013-07-24 | RSAGA | SAGA Geoprocessing and Terrain Analysis in R |

2013-07-24 | RxCEcolInf | R x C Ecological Inference With Optional Incorporation of Survey Information |

2013-07-24 | tgram | Functions to compute and plot tracheidograms |

2013-07-23 | ABCp2 | Approximate Bayesian Computational model for estimating P2 |

2013-07-23 | diptest | Hartigan's dip test statistic for unimodality - corrected code |

2013-07-23 | directlabels | Direct labels for multicolor plots in lattice or ggplot2 |

2013-07-23 | fdatest | Interval Testing Procedure for functional data |

2013-07-23 | neuroblastoma | Neuroblastoma copy number profiles |

2013-07-23 | PatternClass | Class-focused pattern metric comparisons using simulation |

2013-07-23 | usdm | Uncertainty analysis for species distribution models |

2013-07-22 | anametrix | Bidirectional connector to Anametrix API |

2013-07-22 | Exact | Unconditional Exact Test |

2013-07-22 | somplot | Visualisation of hexagonal Kohonen maps |

2013-07-22 | vars | VAR Modelling |

2013-07-22 | wordmatch | Matches words in one file with words in another file |

2013-07-21 | mondate | Keep track of dates in terms of months |

2013-07-21 | suRtex | LaTeX descriptive statistic reporting for survey data |

2013-07-19 | abf2 | Load Axon ABF2 files (currently only in gap-free recording mode) |

2013-07-19 | BsMD | Bayes Screening and Model Discrimination |

2013-07-19 | multisensi | Multivariate Sensitivity Analysis |

2013-07-18 | bride | Brier score decomposition of probabilistic forecasts for binary events |

2013-07-18 | Causata | Analysis utilities for binary classification and Causata users |

2013-07-18 | DescribeDisplay | R interface to DescribeDisplay (GGobi plugin) |

2013-07-18 | FactoClass | Combination of Factorial Methods and Cluster Analysis |

2013-07-18 | rsem | Robust Structural Equation Modeling with Missing Data and Auxiliary Variables |

2013-07-17 | maRketSim | Market simulator for R |

2013-07-16 | entropy | Estimation of Entropy, Mutual Information and Related Quantities |

2013-07-16 | LogrankA | Logrank Test for Aggregated Survival Data |

2013-07-16 | QSARdata | Quantitative Structure Activity Relationship (QSAR) Data Sets |

2013-07-15 | fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |

2013-07-15 | mapplots | Data visualisation on maps |

2013-07-15 | rexpokit | R wrappers for EXPOKIT; other matrix functions |

2013-07-15 | straweib | Stratified Weibull Regression Model |

2013-07-14 | gpk | 100 Data Sets for Statistics Education |

2013-07-14 | oblique.tree | Oblique Trees for Classification Data |

2013-07-13 | kza | Kolmogorov-Zurbenko Adaptive Filters |

2013-07-13 | phyloclim | Integrating Phylogenetics and Climatic Niche Modeling |

2013-07-12 | desire | Desirability functions in R |

2013-07-12 | icaOcularCorrection | Independent Components Analysis (ICA) based artifact correction |

2013-07-12 | LS2W | Locally stationary two-dimensional wavelet process estimation scheme |

2013-07-12 | PROFANCY | The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways |

2013-07-11 | DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |

2013-07-11 | munsell | Munsell colour system |

2013-07-11 | optBiomarker | Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules |

2013-07-11 | sig | Print function signatures |

2013-07-11 | splus2R | Supplemental S-PLUS functionality in R |

2013-07-11 | switchnpreg | Switching nonparametric regression models for a single curve and functional data |

2013-07-10 | LoopAnalyst | A collection of tools to conduct Levins' Loop Analysis |

2013-07-10 | MDM | Multinomial Diversity Model |

2013-07-10 | multicool | Permutations of multisets in cool-lex order |

2013-07-10 | tripEstimation | Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes |

2013-07-09 | backtest | Exploring portfolio-based conjectures about financial instruments |

2013-07-09 | EnvNicheR | Environmental niche |

2013-07-09 | ipfp | Fast implementation of the iterative proportional fitting procedure in C |

2013-07-09 | portfolio | Analysing equity portfolios |

2013-07-09 | portfolioSim | Framework for simulating equity portfolio strategies |

2013-07-09 | R based Twitter client | |

2013-07-09 | VDA | VDA |

2013-07-08 | coxphf | Cox regression with Firth's penalized likelihood |

2013-07-08 | fast | Implementation of the Fourier Amplitude Sensitivity Test (FAST) |

2013-07-08 | Laterality | Functions to calculate common laterality statistics in primatology |

2013-07-06 | sGPCA | Sparse Generalized Principal Component Analysis |

2013-07-06 | smoothie | Two-dimensional Field Smoothing |

2013-07-05 | bgeva | Binary Generalized Extreme Value Additive Models |

2013-07-05 | clusthaplo | Clustering of haplotypes |

2013-07-05 | EDR | Estimation of the effective dimension reduction (EDR) space |

2013-07-05 | MADAM | This package provides some basic methods for meta-analysis |

2013-07-04 | ExactCIdiff | Inductive Confidence Intervals for the difference between two proportions |

2013-07-04 | LDcorSV | Linkage disequilibrium corrected by the structure and the relatedness |

2013-07-03 | abundant | Abundant regression and high-dimensional principal fitted components |

2013-07-03 | editrules | R package for parsing, applying, and manipulating data cleaning rules |

2013-07-03 | gamlss.util | GAMLSS Utilities |

2013-07-03 | gsalib | Utility functions for GATK |

2013-07-03 | QZ | Generalized Eigenvalues and QZ Decomposition |

2013-07-03 | SNPtools | Accessing, subsetting and plotting mouse SNPs |

2013-07-03 | splm | Econometric Models for Spatial Panel Data |

2013-07-02 | clusterGenomics | Identifying clusters in genomics data by recursive partitioning |

2013-07-02 | deTestSet | Testset for differential equations |

2013-07-02 | flexclust | Flexible Cluster Algorithms |

2013-07-02 | limSolve | Solving Linear Inverse Models |

2013-07-02 | retimes | Reaction Time Analysis |

2013-07-01 | DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes |

2013-07-01 | pathClass | Classification using biological pathways as prior knowledge |

2013-06-30 | AlleleRetain | Allele Retention, Inbreeding, and Demography |

2013-06-29 | sjdbc | JDBC Driver Interface |

2013-06-29 | tibbrConnector | R interface to tibbr |

2013-06-28 | CaDENCE | Conditional Density Estimation Network Construction and Evaluation |

2013-06-28 | FField | Force field simulation for a set of points |

2013-06-28 | FisherEM | The Fisher-EM algorithm |

2013-06-28 | loglognorm | Double log normal distribution functions |

2013-06-28 | MatchIt | MatchIt: Nonparametric Preprocessing for Parametric Casual Inference |

2013-06-28 | r2dRue | 2d Rain Use Efficience model |

2013-06-28 | rgenoud | R version of GENetic Optimization Using Derivatives |

2013-06-27 | b6e6rl | Adaptive differential evolution, b6e6rl variant |

2013-06-27 | itree | Tools for classification and regression trees, with an emphasis on interpretability |

2013-06-27 | MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights |

2013-06-27 | ParDNAcopy | parallel implementation of the "segment" function of package "DNAcopy" |

2013-06-27 | PCICt | Implementation of POSIXct work-alike for 365 and 360 day calendars |

2013-06-26 | CoxRidge | Cox models with dynamic ridge penalties |

2013-06-26 | distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |

2013-06-26 | JudgeIt | JudgeIt: A Program for Evaluating Electoral Systems and Redistricting Plans |

2013-06-26 | logistf | Firth's bias reduced logistic regression |

2013-06-26 | rv | Simulation-based random variable objects |

2013-06-26 | SPOT | Sequential Parameter Optimization |

2013-06-25 | LICurvature | Sensitivity Analysis for Case Weight in Normal Linear Regression |

2013-06-24 | fArma | ARMA Time Series Modelling |

2013-06-24 | fAsianOptions | EBM and Asian Option Valuation |

2013-06-24 | fNonlinear | Nonlinear and Chaotic Time Series Modelling |

2013-06-24 | fOptions | Basics of Option Valuation |

2013-06-24 | fUnitRoots | Trends and Unit Roots |

2013-06-24 | tsModel | Time Series Modeling for Air Pollution and Health |

2013-06-23 | crrSC | Competing risks regression for Stratified and Clustered data |

2013-06-21 | ArrayBin | Binarization of numeric data arrays |

2013-06-21 | cfa | Analysis of configuration frequencies (CFA) |

2013-06-20 | CNprep | pre-process DNA copy number (CN) data for detection of CN events |

2013-06-20 | RobustAFT | Truncated Maximum Likelihood fit and Robust Accelerated Failure Time regression for Gaussian and log-Weibull case |

2013-06-20 | XML | Tools for parsing and generating XML within R and S-Plus |

2013-06-19 | FRAPO | Financial Risk Modelling and Portfolio Optimisation with R |

2013-06-19 | gwrr | Fits geographically weighted regression models with diagnostic tools |

2013-06-19 | Mcomp | Data from the M-competitions |

2013-06-19 | MConjoint | Conjoint Analysis through Averaging of Multiple Analyses |

2013-06-19 | MethComp | Functions for analysis of agreement in method comparison studies |

2013-06-19 | RSiena | Siena - Simulation Investigation for Empirical Network Analysis |

2013-06-19 | SmithWilsonYieldCurve | Smith-Wilson Yield Curve Construction |

2013-06-18 | aods3 | Analysis of Overdispersed Data using S3 methods |

2013-06-18 | glmlep | Fit GLM with LEP-based penalized maximum likelihood |

2013-06-18 | gsarima | Two functions for Generalized SARIMA time series simulation |

2013-06-18 | rsgcc | Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data |

2013-06-18 | ZeBook | ZeBook Working with dynamic models for agriculture and environment |

2013-06-17 | Bolstad | Bolstad functions |

2013-06-17 | Bolstad2 | Bolstad functions |

2013-06-17 | MCPerm | A Monte Carlo permutation method for multiple test correlation |

2013-06-17 | twiddler | Interactive manipulation of R expressions |

2013-06-16 | CompQuadForm | Distribution function of quadratic forms in normal variables |

2013-06-16 | JointRegBC | Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach |

2013-06-16 | nsga2R | Elitist Non-dominated Sorting Genetic Algorithm based on R |

2013-06-15 | MExPosition | Multi-table ExPosition |

2013-06-14 | doMPI | Foreach parallel adaptor for the Rmpi package |

2013-06-14 | miscF | Miscellaneous Functions |

2013-06-14 | ordPens | Selection and/or Smoothing of Ordinal Predictors |

2013-06-13 | depthTools | Depth Tools Package |

2013-06-13 | govStatJPN | functions to get public survey data in Japan |

2013-06-13 | PDSCE | Positive definite sparse covariance estimators |

2013-06-13 | RcmdrPlugin.depthTools | R commander Depth Tools Plug-In |

2013-06-12 | candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |

2013-06-12 | cobs99 | Constrained B-splines – outdated 1999 version |

2013-06-12 | ReacTran | Reactive transport modelling in 1D, 2D and 3D |

2013-06-12 | smoothSurv | Survival Regression with Smoothed Error Distribution |

2013-06-12 | SoDA | Functions and Examples for "Software for Data Analysis" |

2013-06-12 | stabledist | Stable Distribution Functions |

2013-06-11 | ISLR | Data for An Introduction to Statistical Learning with Applications in R |

2013-06-11 | MRCE | Multivariate regression with covariance estimation |

2013-06-11 | SIMMS | Subnetwork Integration for Multi-Modal Signatures |

2013-06-11 | tbdiag | Functions for tuberculosis diagnostics research |

2013-06-10 | cabootcrs | Bootstrap Confidence Regions for Correspondence Analysis |

2013-06-10 | covLCA | Latent Class Models with Covariate Effects on Underlying and Measured Variables |

2013-06-10 | sparktex | Generate LaTeX sparklines in R |

2013-06-09 | MNP | R Package for Fitting the Multinomial Probit Model |

2013-06-08 | Amelia | Amelia II: A Program for Missing Data |

2013-06-08 | lshorth | The Length of the Shorth |

2013-06-08 | pbs | Periodic B Splines |

2013-06-07 | GWAF | Genome-wide association/interaction analysis and rare variant analysis with family data |

2013-06-06 | IUPS | Incorporating Uncertainties in Propensity Scores |

2013-06-06 | LVMMCOR | A Latent Variable Model for Mixed Continuous and Ordinal Responses |

2013-06-06 | urca | Unit root and cointegration tests for time series data |

2013-06-05 | batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |

2013-06-04 | FGalgorithm | Flury and Gautschi algorithms |

2013-06-04 | mopsocd | MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance |

2013-06-04 | NPMVCP | Nonparametric Multivariate Change Point Model |

2013-06-04 | PrivateLR | Differentially private regularized logistic regression |

2013-06-04 | RfmriVC | Varying stimulus coefficient fMRI models in R |

2013-06-04 | RSADBE | Data related to the book "R Statistical Application Development by Example" |

2013-06-04 | SCEPtER | Stellar CharactEristics Pisa Estimation gRid |

2013-06-04 | SCEPtERextras | Additional grids for SCEPtER |

2013-06-04 | skatMeta | Efficient meta analysis for the SKAT test |

2013-06-03 | ahaz | Regularization for semiparametric additive hazards regression |

2013-06-03 | l2boost | l2boost - Friedman's boosting algorithm for regularized linear regression |

2013-06-03 | nlts | (non)linear time series analysis |

2013-06-03 | RobustRankAggreg | Methods for robust rank aggregation |

2013-06-03 | TrialSize | R functions in Chapter 3,4,6,7,9,10,11,12,14,15 |

2013-05-31 | KoNLP | Korean NLP Package |

2013-05-31 | protoclass | Interpretable classification with prototypes |

2013-05-31 | Simile | Interact with Simile models |

2013-05-30 | metamisc | Diagnostic and prognostic meta analysis (metamisc) |

2013-05-29 | branchLars | Cost-efficient Variable Selection |

2013-05-29 | OneTwoSamples | Deal with one and two (normal) samples |

2013-05-28 | CoinMinD | Simultaneous Confidence Interval for Multinomial Proportion |

2013-05-28 | DTMCPack | Suite of functions related to discrete-time discrete-state Markov Chains |

2013-05-28 | fitTetra | fitTetra is an R package for assigning tetraploid genotype scores |

2013-05-28 | RVtests | Rare Variant Tests |

2013-05-27 | compareODM | comparison of medical forms in CDISC ODM format |

2013-05-27 | eba | Elimination-by-Aspects (EBA) Models |

2013-05-27 | SesIndexCreatoR | Computation and visualization of socioeconomic indices and categories distributions |

2013-05-27 | Tides | Tides |

2013-05-27 | timeROC | Time-dependent ROC curve and AUC for censored survival data |

2013-05-26 | ggROC | package for roc curve plot with ggplot2 |

2013-05-26 | McSpatial | Nonparametric spatial data analysis |

2013-05-25 | profdpm | Profile Dirichlet Process Mixtures |

2013-05-25 | SphericalCubature | Numerical integration over spheres and balls in n-dimensions; multivariate polar coordinates |

2013-05-24 | BSquare | Bayesian Simultaneous Quantile Regression |

2013-05-24 | lbiassurv | Length-biased correction to survival curve estimation |

2013-05-24 | tlnise | Two-level normal independent sampling estimation |

2013-05-23 | Haplin | Analyzing case-parent triad and/or case-control data with SNP haplotypes |

2013-05-23 | InferenceSMR | Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival |

2013-05-23 | SODC | Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC) |

2013-05-22 | cyphid | Cycle and Phase Identification for mastication data |

2013-05-22 | parallelize.dynamic | Automate parallelization of function calls by means of dynamic code analysis |

2013-05-22 | trueskill | Implementation the TrueSkill algorithm in R |

2013-05-21 | fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |

2013-05-21 | rPlant | R interface to the iPlant Discovery Environment |

2013-05-21 | SetMethods | SetMethods: A Package Companion to "Set-Theoretic Methods for the Social Sciences" |

2013-05-20 | Comp2ROC | Compare two ROC curves that intersect |

2013-05-20 | pom | POM - Patch Occupancy Models |

2013-05-19 | pnmtrem | Probit-Normal Marginalized Transition Random Effects Models |

2013-05-19 | probsvm | probsvm: Class probability estimation for Support Vector Machines |

2013-05-18 | CfEstimateQuantiles | Estimate quantiles using any order Cornish-Fisher expansion |

2013-05-18 | SMFI5 | R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering' |

2013-05-17 | CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |

2013-05-16 | biglm | bounded memory linear and generalized linear models |

2013-05-16 | chillR | Statistical methods for phenology analysis in temperate fruit trees |

2013-05-16 | grnn | General regression neural network |

2013-05-16 | PurBayes | Bayesian Estimation of Tumor Purity and Clonality |

2013-05-16 | ROCR | Visualizing the performance of scoring classifiers |

2013-05-15 | ABCExtremes | ABC Extremes |

2013-05-15 | Nozzle.R1 | Nozzle Reports |

2013-05-15 | RDSTK | An R wrapper for the Data Science Toolkit API |

2013-05-14 | dsample | Discretization-based Direct Random Sample Generation |

2013-05-14 | SLHD | Maximin-Distance (Sliced) Latin Hypercube Designs |

2013-05-14 | sos4R | An R client for the OGC Sensor Observation Service |

2013-05-14 | Tinflex | Tinflex - Universal non-uniform random number generator |

2013-05-13 | csSAM | csSAM - cell-specific Significance Analysis of Microarrays |

2013-05-13 | hgam | High-dimensional Additive Modelling |

2013-05-13 | OpenMPController | Control number of OpenMP threads dynamically |

2013-05-13 | tseries | Time series analysis and computational finance |

2013-05-12 | coefplot | Plots Coefficients from Fitted Models |

2013-05-11 | ergmharris | Local Health Department network data set |

2013-05-10 | ArDec | Time series autoregressive-based decomposition |

2013-05-10 | covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |

2013-05-10 | CoxBoost | Cox models by likelihood based boosting for a single survival endpoint or competing risks |

2013-05-10 | GAMBoost | Generalized linear and additive models by likelihood based boosting |

2013-05-10 | gbm | Generalized Boosted Regression Models |

2013-05-10 | multilevelPSA | Multilevel Propensity Score Analysis |

2013-05-10 | RcppProgress | An interruptible progress bar with OpenMP support for c++ in R packages |

2013-05-09 | gputools | A few GPU enabled functions |

2013-05-09 | HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |

2013-05-09 | NHEMOtree | Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification |

2013-05-09 | timeline | Timelines for a Grammar of Graphics |

2013-05-09 | wpp2010 | World Population Prospects 2010 |

2013-05-08 | eventstudies | Event study and extreme event analysis |

2013-05-08 | intergraph | Coercion routines for network data objects in R |

2013-05-08 | lisrelToR | Import output from LISREL into R |

2013-05-08 | rapport | A report templating system |

2013-05-07 | CircNNTSR | CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models |

2013-05-07 | corrsieve | CorrSieve |

2013-05-07 | cshapes | CShapes Dataset and Utilities |

2013-05-07 | ExpDes | Experimental Designs package |

2013-05-07 | ExpDes.pt | Pacote Experimental Designs (Portuguese) |

2013-05-07 | InteractiveIGraph | interactive network analysis and visualization |

2013-05-07 | pnn | Probabilistic neural networks |

2013-05-06 | bdoc | Bayesian Discrete Ordered Classification of DNA Barcodes |

2013-05-06 | CCAGFA | Bayesian canonical correlation analysis and group factor analysis |

2013-05-06 | GibbsACOV | Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models |

2013-05-06 | simex | SIMEX- and MCSIMEX-Algorithm for measurement error models |

2013-05-04 | gsbDesign | Group Sequential Bayes Design |

2013-05-04 | HydroMe | R codes for estimating water retention and infiltration model parameters using experimental data |

2013-05-03 | acepack | ace() and avas() for selecting regression transformations |

2013-05-03 | bnpmr | Bayesian monotonic nonparametric regression |

2013-05-03 | diffdepprop | Calculates Confidence Intervals for two Dependent Proportions |

2013-05-03 | dma | Dynamic model averaging |

2013-05-03 | iteRates | Parametric rate comparison |

2013-05-03 | mixsep | Forensic Genetics DNA Mixture Separation |

2013-05-02 | RAP | Reversal Association Pattern |

2013-05-02 | SDBP | Calculate the third-order accurate Unbiased P-values via Speedy double bootstrap method |

2013-05-02 | SNPMClust | A bivariate Gaussian genotype clustering and calling algorithm for Illumina microarrays |

2013-05-02 | spcosa | Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata |

2013-05-02 | vardiag | A package for variogram diagnostics |

2013-05-01 | CountsEPPM | Mean and variance modeling of count data |

2013-05-01 | downloader | A package for downloading files over http and https |

2013-05-01 | fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |

2013-05-01 | MCMCpack | Markov chain Monte Carlo (MCMC) Package |

2013-05-01 | networksis | Simulate bipartite graphs with fixed marginals through sequential importance sampling |

2013-05-01 | RnavGraphImageData | Some image data used in the RnavGraph package demos |

2013-04-30 | MAMA | Meta-Analysis of MicroArray |

2013-04-30 | PhViD | PhViD: an R package for PharmacoVigilance signal Detection |

2013-04-29 | tseriesChaos | Analysis of nonlinear time series |

2013-04-28 | whisker | {{mustache}} for R, logicless templating |

2013-04-27 | MicroStrategyR | MicroStrategyR Package |

2013-04-26 | FuzzyToolkitUoN | Type 1 Fuzzy Logic Toolkit |

2013-04-26 | ROAuth | R interface for OAuth |

2013-04-25 | coefficientalpha | Robust Cronbach's alpha with missing and non-normal data |

2013-04-25 | dbEmpLikeNorm | Test for joint assessment of normality |

2013-04-25 | hsmm | Hidden Semi Markov Models |

2013-04-25 | princurve | Fits a Principal Curve in Arbitrary Dimension |

2013-04-25 | sendplot | Tool for sending interactive plots with tool-tip content |

2013-04-25 | SpherWave | Spherical Wavelets and SW-based Spatially Adaptive Methods |

2013-04-24 | DetSel | A computer program to detect markers responding to selection |

2013-04-24 | dirmult | Estimation in Dirichlet-Multinomial distribution |

2013-04-24 | lars | Least Angle Regression, Lasso and Forward Stagewise |

2013-04-24 | logspline | Logspline density estimation routines |

2013-04-23 | GENEAread | Package For Reading Binary files |

2013-04-23 | R2G2 | Converting R CRAN outputs into Google Earth |

2013-04-23 | siar | Stable Isotope Analysis in R |

2013-04-23 | superbiclust | Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering) |

2013-04-22 | FFD | Freedom From Disease |

2013-04-22 | TESS | Fast simulation of reconstructed phylogenetic trees under time-dependent birth-death processes |

2013-04-21 | causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |

2013-04-21 | mgraph | Graphing map attributes and non-map variables in R |

2013-04-20 | cdb | Reading and Writing Constant DataBases |

2013-04-20 | DEoptim | Global optimization by Differential Evolution |

2013-04-20 | ibdreg | Regression Methods for IBD Linkage With Covariates |

2013-04-20 | locfit | Local Regression, Likelihood and Density Estimation |

2013-04-19 | boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |

2013-04-19 | FrF2.catlg128 | Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words |

2013-04-19 | PairedData | Paired Data Analysis |

2013-04-19 | repolr | Repeated measures proportional odds logistic regression |

2013-04-19 | spatialCovariance | Computation of spatial covariance matrices for data on rectangles |

2013-04-18 | glmdm | R Code for Simulation of GLMDM |

2013-04-18 | Iso | Functions to perform isotonic regression |

2013-04-18 | madsim | A Flexible Microarray Data Simulation Model |

2013-04-18 | palaeoSig | Significance tests for palaeoenvironmental reconstructions |

2013-04-18 | review | Manage Review Logs |

2013-04-18 | spikeslab | Prediction and variable selection using spike and slab regression |

2013-04-18 | threg | Threshold Regression |

2013-04-17 | catspec | Special models for categorical variables |

2013-04-17 | CheckDigit | Calculate and verify check digits |

2013-04-17 | decon | Deconvolution Estimation in Measurement Error Models |

2013-04-17 | DnE | DnE(Distribution and Equation) |

2013-04-17 | GAIPE | Graphical Extension with Accuracy in Parameter Estimation (GAIPE) |

2013-04-17 | lpridge | Local Polynomial (Ridge) Regression |

2013-04-17 | mvbutils | Workspace organization, code and documentation editing, package prep and editing, etc |

2013-04-17 | nbpMatching | functions for non-bipartite optimal matching |

2013-04-17 | quadprog | Functions to solve Quadratic Programming Problems |

2013-04-17 | rmp | Rounded Mixture Package. Performs probability mass function estimation with Dirichlet process mixtures of rounded kernels |

2013-04-17 | TBSSurvival | TBS Model R package |

2013-04-16 | appell | Compute Appell's F1 hypergeometric function |

2013-04-16 | FRB | Fast and Robust Bootstrap |

2013-04-16 | FWDselect | Selecting variables in regression models |

2013-04-16 | JGL | Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes |

2013-04-16 | pspline | Penalized Smoothing Splines |

2013-04-16 | qtlbim | QTL Bayesian Interval Mapping |

2013-04-16 | spacejam | Sparse conditional graph estimation with joint additive models |

2013-04-15 | peplib | Peptide Library Analysis Methods |

2013-04-15 | R2Cuba | Multidimensional Numerical Integration |

2013-04-14 | clinsig | Clinical significance functions |

2013-04-13 | DeducerSpatial | Deducer for spatial data analysis |

2013-04-13 | ellipse | Functions for drawing ellipses and ellipse-like confidence regions |

2013-04-13 | FBFsearch | Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors |

2013-04-13 | ggmap | A package for spatial visualization with Google Maps and OpenStreetMap |

2013-04-13 | OpenStreetMap | Access to open street map raster images |

2013-04-12 | glmulti | Model selection and multimodel inference made easy |

2013-04-12 | logging | R logging package |

2013-04-12 | orderbook | Orderbook visualization/Charting software |

2013-04-12 | sideChannelAttack | Side Channel Attack |

2013-04-12 | WARN | Weaning Age Reconstruction with Nitrogen isotope analysis |

2013-04-10 | clinUtiDNA | Clinical Utility of DNA Testing |

2013-04-10 | deseasonalize | Optimal deseasonalization for geophysical time series using AR fitting |

2013-04-10 | multilevel | Multilevel Functions |

2013-04-10 | R2OpenBUGS | Running OpenBUGS from R |

2013-04-09 | DAMisc | Dave Armstrong's Miscellaneous Functions |

2013-04-09 | phcfM | Modelling anthropogenic deforestation |

2013-04-09 | R1magic | Compressive Sampling: Sparse signal recovery utilities |

2013-04-09 | randomSurvivalForest | Random Survival Forests |

2013-04-09 | rbugs | Fusing R and OpenBugs and Beyond |

2013-04-08 | df2json | Convert a dataframe to JSON |

2013-04-08 | LVQTools | Learning Vector Quantization Tools |

2013-04-08 | peperr | Parallelised Estimation of Prediction Error |

2013-04-08 | survIDINRI | IDI and NRI for comparing competing risk prediction models with censored survival data |

2013-04-07 | bc3net | BC3NET |

2013-04-07 | difR | Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics |

2013-04-07 | popgen | Statistical and Population Genetics |

2013-04-07 | R2WinBUGS | Running WinBUGS and OpenBUGS from R / S-PLUS |

2013-04-07 | SportsAnalytics | Infrastructure for Sports Analytics |

2013-04-05 | concreg | Concordance regression |

2013-04-05 | DiceOptim | Kriging-based optimization for computer experiments |

2013-04-05 | persiandictionary | English to Persian dictionary |

2013-04-05 | PlotRegionHighlighter | Creates an envelope that surrounds a set of points plotted in a two dimensional space |

2013-04-05 | psbcGroup | Penalized semi-parametric Bayesian Cox (PSBC) models with shrinkage and grouping priors |

2013-04-04 | BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |

2013-04-04 | GeoLight | Analysis of light based geolocator data |

2013-04-04 | inflection | Finds the inflection point of a curve |

2013-04-04 | relsurv | Relative survival |

2013-04-04 | sae | Small Area Estimation |

2013-04-04 | tgp | Bayesian treed Gaussian process models |

2013-04-03 | lint | Tools to check R code style |

2013-04-03 | magma | Matrix Algebra on GPU and Multicore Architectures |

2013-04-03 | ncbit | retrieve and build NBCI taxonomic data |

2013-04-03 | noweb | Noweb system for R |

2013-04-03 | relevent | Relational Event Models |

2013-04-03 | softclassval | Soft classification performance measures |

2013-04-03 | softImpute | matrix completion via iterative soft-thresholded svd |

2013-04-03 | TimeWarp | Date calculations and manipulation |

2013-04-03 | trioGxE | A data smoothing approach to explore and test gene-environment interaction in case-parent trio data |

2013-04-02 | ConvCalendar | Converts dates between calendars |

2013-04-02 | ENmisc | Neuwirth miscellaneous |

2013-04-02 | infutil | Information Utility |

2013-04-02 | MLEcens | Computation of the MLE for bivariate (interval) censored data |

2013-04-02 | normalp | Package for exponential power distributions (EPD) |

2013-04-02 | SGL | Fit a GLM (or cox model) with a combination of lasso and group lasso regularization |

2013-04-02 | SPIn | Simulation-efficient Shortest Probability Intervals |

2013-04-01 | biganalytics | A library of utilities for big.matrix objects of package bigmemory |

2013-04-01 | gpclib | General Polygon Clipping Library for R |

2013-04-01 | optAUC | Optimal Combinations of Diagnostic Tests Based on AUC |

2013-03-31 | nice | Get or Set UNIX Niceness |

2013-03-30 | pbatR | P2BAT |

2013-03-30 | thgenetics | Genetic Rare Variants Tests |

2013-03-30 | TSHRC | Two Stage Hazard Rate Comparison |

2013-03-29 | experiment | experiment: R package for designing and analyzing randomized experiments |

2013-03-29 | FuncMap | Hive Plots of R Package Function Calls |

2013-03-29 | pooh | Partial Orders and Relations |

2013-03-29 | Ritc | Isothermal Titration Calorimetry (ITC) Data Analysis |

2013-03-28 | ICE | Iterated Conditional Expectation |

2013-03-28 | robustX | eXperimental Functionality for Robust Statistics |

2013-03-28 | sprsmdl | Sparse modeling toolkit |

2013-03-27 | farsi | Translate integers into persian |

2013-03-27 | meteogRam | Tools for plotting meteograms |

2013-03-27 | RPostgreSQL | R interface to the PostgreSQL database system |

2013-03-27 | severity | Mayo's Post-data Severity Evaluation |

2013-03-26 | A3 | A3: Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |

2013-03-26 | Bayesthresh | Bayesian thresholds mixed-effects models for categorical data |

2013-03-26 | HI | Simulation from distributions supported by nested hyperplanes |

2013-03-26 | spatialkernel | Nonparameteric estimation of spatial segregation in a multivariate point process |

2013-03-25 | gaoptim | Genetic Algorithm optimization for real-based and permutation-based problems |

2013-03-25 | HAP.ROR | Recursive Organizer (ROR) |

2013-03-25 | hashFunction | A collection of non-cryptographic hash functions |

2013-03-25 | phonR | R tools for phoneticians and phonologists |

2013-03-25 | PMA | Penalized Multivariate Analysis |

2013-03-23 | crimCV | Group-Based Modelling of Longitudinal Data |

2013-03-23 | flsa | Path algorithm for the general Fused Lasso Signal Approximator |

2013-03-23 | hcc | Hidden correlation check |

2013-03-22 | FluOMatic | Estimation of background-subtracted fluorescence data |

2013-03-22 | margie | Log Marginal Likelihood of Gaussian Mixture |

2013-03-22 | orientlib | Support for orientation data |

2013-03-21 | MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |

2013-03-21 | pca3d | Three dimensional PCA plots |

2013-03-21 | RNCEP | Obtain, organize, and visualize NCEP weather data |

2013-03-20 | cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |

2013-03-20 | DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |

2013-03-20 | MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data |

2013-03-20 | rCarto | This package builds maps with a full cartographic layout |

2013-03-19 | AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format |

2013-03-19 | BiplotGUI | Interactive Biplots in R |

2013-03-19 | DeducerExtras | Additional dialogs and functions for Deducer |

2013-03-19 | QCAGUI | QCA Graphical User Interface |

2013-03-19 | sets | Sets, Generalized Sets, Customizable Sets and Intervals |

2013-03-19 | tpe | Tree preserving embedding |

2013-03-18 | crossdes | Construction of Crossover Designs |

2013-03-18 | cvplogistic | Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm |

2013-03-18 | marqLevAlg | An algorithm for least-squares curve fitting |

2013-03-18 | MixtureInf | Inference for Finite Mixture Models |

2013-03-18 | rgr | The GSC Applied Geochemistry EDA Package |

2013-03-18 | SmarterPoland | A set of tools developed by the Foundation SmarterPoland.pl |

2013-03-17 | ensembleMOS | Ensemble Model Output Statistics |

2013-03-17 | TTR | Technical Trading Rules |

2013-03-16 | FitAR | Subset AR Model Fitting |

2013-03-15 | brnn | brnn (Bayesian regularization for feed-forward neural networks) |

2013-03-15 | fImport | Rmetrics - Economic and Financial Data Import |

2013-03-15 | nordklimdata1 | Dataset for climate analysis with data from the Nordic region |

2013-03-14 | BlockMessage | Creates strings that show a text message in 8 by 8 block letters |

2013-03-14 | CUMP | Analyze Multivariate Phenotypes by Combining Univariate results |

2013-03-14 | EVER | Estimation of Variance by Efficient Replication |

2013-03-14 | fpp | Data for "Forecasting: principles and practice" |

2013-03-14 | GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |

2013-03-14 | hsicCCA | Canonical Correlation Analysis based on Kernel Independence Measures |

2013-03-13 | bams | Breakpoint annotation model smoothing |

2013-03-13 | BayHap | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |

2013-03-13 | dixon | Nearest Neighbour Contingency Table Analysis |

2013-03-13 | ecespa | Functions for spatial point pattern analysis |

2013-03-13 | miscTools | Miscellaneous Tools and Utilities |

2013-03-13 | mpmcorrelogram | Multivariate Partial Mantel Correlogram |

2013-03-13 | perry | Resampling-based prediction error estimation for regression models |

2013-03-13 | swamp | Visualization, analysis and adjustment of high-dimensional data in respect to sample annotations |

2013-03-13 | zoeppritz | Zoeppritz Equations |

2013-03-12 | ber | Batch Effects Removal |

2013-03-12 | kappaSize | Sample Size Estimation Functions for Studies of Interobserver Agreement |

2013-03-12 | penDvine | Flexible Pair-Copula Estimation in D-vines using Bivariate Penalized Splines |

2013-03-12 | qtlmt | Tools for mapping multiple complex traits |

2013-03-12 | reports | An R package to assist in the workflow of writing academic articles and other reports |

2013-03-11 | cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty |

2013-03-11 | FuzzyStatProb | Fuzzy stationary probabilities from a sequence of observations of an unknown Markov chain |

2013-03-11 | patchPlot | Scatterplots of image patches |

2013-03-11 | semisupKernelPCA | Kernel PCA projection, and semi-supervised variant |

2013-03-10 | biclust | BiCluster Algorithms |

2013-03-10 | Sleuth3 | Data sets from Ramsey and Schafer's "Statistical Sleuth (3rd ed)" |

2013-03-10 | VisuClust | VisuClust |

2013-03-08 | BBMM | Brownian bridge movement model |

2013-03-08 | EpiEstim | EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves |

2013-03-08 | nls2 | Non-linear regression with brute force |

2013-03-08 | rawFasta | Memory efficient handling of FASTA sequence files, a pure R implementation |

2013-03-07 | abn | Data Modelling with Additive Bayesian Networks |

2013-03-07 | dse | Dynamic Systems Estimation (time series package) |

2013-03-07 | emdbook | Ecological models and data (book support) |

2013-03-07 | GESTr | Gene Expression State Transformation |

2013-03-07 | LDOD | Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models |

2013-03-06 | IM | Orthogonal Moment Analysis |

2013-03-05 | cec2013 | Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |

2013-03-04 | bifactorial | Inferences for bi- and trifactorial trial designs |

2013-03-04 | MAR1 | Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data |

2013-03-04 | nets | Network Estimation for Time Series |

2013-03-04 | SpatialExtremes | Modelling Spatial Extremes |

2013-03-04 | StandardizeText | Standardize Text |

2013-03-04 | survexp.fr | Relative survival, AER and SMR based on French death rates |

2013-03-03 | ringbuffer | Ring buffer (circular buffer) data structure |

2013-03-03 | YplantQMC | Plant architectural analysis with Yplant and QuasiMC |

2013-03-01 | AtmRay | Acoustic Traveltime Calculations for 1-D Atmospheric Models |

2013-03-01 | glmperm | Inference in Generalized Linear Models |

2013-03-01 | perARMA | Package for Periodic Time Series Analysis |

2013-03-01 | rCMA | CMA-ES R-to-Java interface |

2013-03-01 | sgeostat | An Object-oriented Framework for Geostatistical Modeling in S+ |

2013-02-28 | heatex | Heat exchange calculations during physical activity |

2013-02-28 | het.test | White's Test for Heteroskedasticity |

2013-02-28 | MOJOV | Mojo Variants: Rare Variants analysis |

2013-02-28 | norm | Analysis of multivariate normal datasets with missing values |

2013-02-27 | HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |

2013-02-27 | Rcgmin | Conjugate gradient minimization of nonlinear functions with box constraints |

2013-02-26 | estout | Estimates Output |

2013-02-26 | fso | Fuzzy Set Ordination |

2013-02-26 | orclus | ORCLUS subspace clustering |

2013-02-26 | SkewHyperbolic | The Skew Hyperbolic Student t-Distribution |

2013-02-25 | cubature | Adaptive multivariate integration over hypercubes |

2013-02-25 | EBMAforecast | Ensemble BMA Forecasting |

2013-02-25 | intcox | Iterated Convex Minorant Algorithm for interval censored event data |

2013-02-25 | iWeigReg | Improved methods for causal inference and missing data problems |

2013-02-25 | queueing | Analysis of Queueing Networks and Models |

2013-02-25 | ror | Robust Ordinal Regression MCDA library |

2013-02-25 | smcUtils | Utility functions for sequential Monte Carlo |

2013-02-25 | tsbugs | Create time series BUGS models |

2013-02-23 | cmm | Categorical Marginal Models |

2013-02-23 | conf.design | Construction of factorial designs |

2013-02-23 | fit.models | fit.models |

2013-02-22 | cheb | Discrete Linear Chebyshev Approximation |

2013-02-22 | epade | Easy Plots |

2013-02-22 | MEET | MEET: Motif Elements Estimation Toolkit |

2013-02-22 | nonparaeff | Nonparametric Methods for Measuring Efficiency and Productivity |

2013-02-22 | triangle | Provides the standard distribution functions for the triangle distribution |

2013-02-21 | bspec | Bayesian spectral inference |

2013-02-21 | Digiroo2 | An application programming interface for generating null models of social contacts based on individuals' space use |

2013-02-21 | DMR | Delete or Merge Regressors for linear model selection |

2013-02-21 | hash | Full feature implementation of hash/associated arrays/dictionaries |

2013-02-21 | RSAP | SAP Netweaver RFC connector for R |

2013-02-20 | PKI | Public Key Infrastucture for R based on the X.509 standard |

2013-02-19 | designGG | Computational tool for designing genetical genomics experiments |

2013-02-18 | bild | bild: a package for BInary Longitudinal Data |

2013-02-17 | audiolyzR | audiolyzR: Give your data a listen |

2013-02-17 | catenary | Fits a catenary to given points |

2013-02-17 | GetR | GetR: Calculate Guttman error trees in R |

2013-02-16 | BACprior | Sensitivity of the Bayesian Adjustment for Confounding (BAC) algorithm to the choice of hyperparameter omega |

2013-02-16 | HIest | Hybrid index estimation |

2013-02-16 | multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |

2013-02-15 | Iboot | Iboot: iterated bootstrap tests and confidence sets |

2013-02-15 | smdc | Document Similarity |

2013-02-14 | monreg | Nonparametric monotone regression |

2013-02-14 | pearson7 | Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2 |

2013-02-14 | poibin | The Poisson Binomial Distribution |

2013-02-14 | survC1 | C-statistics for risk prediction models with censored survival data |

2013-02-11 | ash | David Scott's ASH routines |

2013-02-11 | gensemble | generalized ensemble methods |

2013-02-11 | mmeln | MMELN : Estimation of multinormal mixture distribution |

2013-02-11 | vitality | vitality: Fitting routines for the Vitality family of mortality models |

2013-02-09 | bayess | Bayesian Essentials with R |

2013-02-09 | Compounding | Computing Continuous Distributions |

2013-02-09 | modiscloud | R tools for processing Level 2 Cloud Mask products from MODIS |

2013-02-09 | SweaveListingUtils | Utilities for Sweave together with TeX listings package |

2013-02-08 | PVR | Computes phylogenetic eigenvectors regression (PVR) and phylogenetic signal-representation curve (PSR) (with null and Brownian expectations) |

2013-02-08 | ternvis | Visualisation, verification and calibration of ternary probabilistic forecasts |

2013-02-07 | beadarrayFilter | Bead filtering for Illumina bead arrays |

2013-02-07 | debug | MVB's debugger for R |

2013-02-07 | galts | Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation |

2013-02-07 | NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |

2013-02-07 | nlsmsn | Fitting nonlinear models with scale mixture of skew-normal distributions |

2013-02-07 | orddom | Ordinal Dominance Statistics |

2013-02-07 | qrnn | Quantile regression neural network |

2013-02-06 | ExactPath | Exact solution paths for regularized LASSO regressions with L_1 penalty |

2013-02-06 | glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |

2013-02-06 | stoichcalc | R Functions for Solving Stoichiometric Equations |

2013-02-05 | exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |

2013-02-05 | fractalrock | Generate fractal time series with non-normal returns distribution |

2013-02-05 | gaussquad | Collection of functions for Gaussian quadrature |

2013-02-05 | ghyp | A package on the generalized hyperbolic distribution and its special cases |

2013-02-05 | pacbpred | PAC-Bayesian Estimation and Prediction in Sparse Additive Models |

2013-02-04 | infoDecompuTE | Information Decomposition of Two-phase Experiments |

2013-02-04 | OOmisc | Ozgur-Ozlem Miscellaneous |

2013-02-04 | orthopolynom | Collection of functions for orthogonal and orthonormal polynomials |

2013-02-04 | timeit | Easy profiling of R functions |

2013-02-03 | degreenet | Models for Skewed Count Distributions Relevant to Networks |

2013-02-03 | futile.any | Futile library to provide some polymorphic operations |

2013-02-03 | pdist | Partitioned Distance Function |

2013-02-03 | TimeProjection | Time Projections |

2013-02-01 | FindIt | R Package for Finding Heterogeneous Treatment Effects |

2013-02-01 | nCDunnett | Noncentral Dunnett's test distribution |

2013-01-31 | ForImp | Imputation of missing values through a forward imputation algorithm |

2013-01-30 | KappaGUI | GUI for Cohen's and Fleiss' Kappa |

2013-01-30 | mlearning | Machine learning algorithms with unified interface and confusion matrices |

2013-01-30 | nephro | Biostatistics utilities for nephrology |

2013-01-30 | randomGLM | Random General Linear Model Prediction |

2013-01-30 | rdryad | Dryad API interface |

2013-01-30 | YieldCurve | Modelling and estimation of the yield curve |

2013-01-29 | DivMelt | HRM Diversity Assay Analysis Tool |

2013-01-29 | EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data |

2013-01-29 | mobForest | Model based Random Forest analysis |

2013-01-29 | SUE | Subsampling method |

2013-01-28 | deal | Learning Bayesian Networks with Mixed Variables |

2013-01-28 | RcmdrPlugin.plotByGroup | Rcmdr plots by group using lattice |

2013-01-28 | seqPERM | Generates a permutation matrix based upon a sequence |

2013-01-28 | svSweave | SciViews GUI API - Sweave functions |

2013-01-27 | bclust | Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data |

2013-01-27 | labeltodendro | Convert labels or tables to a dendrogram |

2013-01-26 | emme2 | Read and Write to an EMME/2 databank |

2013-01-26 | shapefiles | Read and Write ESRI Shapefiles |

2013-01-26 | UWHAM | Unbinned weighted histogram analysis method (UWHAM) |

2013-01-25 | FI | Provide functions for forest inventory calculations |

2013-01-25 | metatest | Fit and test metaregression models |

2013-01-25 | misc3d | Miscellaneous 3D Plots |

2013-01-25 | pln | Polytomous logit-normit (graded logistic) model estimation |

2013-01-25 | RcmdrPlugin.StatisticalURV | Statistical URV Rcmdr Plug-In |

2013-01-25 | RcmdrPlugin.TeachingDemos | Rcmdr Teaching Demos Plug-In |

2013-01-24 | dichromat | Color Schemes for Dichromats |

2013-01-24 | medSTC | A max-margin supervised Sparse Topical Coding Model |

2013-01-24 | RcmdrPlugin.SLC | SLC Rcmdr Plug-in |

2013-01-24 | SLC | Slope and level change |

2013-01-23 | RcmdrPlugin.KMggplot2 | An Rcmdr Plug-In for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package |

2013-01-23 | sirad | Functions for calculating daily solar radiation and evapotranspiration |

2013-01-22 | RCALI | Calculation of the Integrated Flow of Particles between Polygons |

2013-01-21 | contfrac | Continued fractions |

2013-01-21 | gemtc.jar | GeMTC Java binary |

2013-01-21 | MM | The multiplicative multinomial distribution |

2013-01-21 | multipol | multivariate polynomials |

2013-01-21 | Oarray | Arrays with arbitrary offsets |

2013-01-21 | randomNames | Random name generating function and data set |

2013-01-21 | RcmdrPlugin.orloca | orloca Rcmdr Plug-in |

2013-01-21 | semPLS | Structural Equation Modeling Using Partial Least Squares |

2013-01-21 | stellaR | stellar evolution tracks and isochrones |

2013-01-21 | TeachingDemos | Demonstrations for teaching and learning |

2013-01-20 | pequod | Moderated regression package |

2013-01-19 | adaptsmoFMRI | Adaptive Smoothing of FMRI Data |

2013-01-19 | currentSurvival | Estimation of CCI and CLFS Functions |

2013-01-19 | RcppXts | Interface the xts API via Rcpp |

2013-01-18 | BCBCSF | Bias-corrected Bayesian Classification with Selected Features |

2013-01-18 | blockrand | Randomization for block random clinical trials |

2013-01-18 | CVThresh | Level-Dependent Cross-Validation Thresholding |

2013-01-18 | edcc | Economic Design of Control Charts |

2013-01-18 | obsSens | Sensitivity analysis for Observational studies |

2013-01-18 | partitionMap | Partition Maps |

2013-01-17 | GWG | Calculation of probabilities for inadequate and excessive gestational weight gain |

2013-01-17 | RcmdrPlugin.survival | R Commander Plug-in for the survival Package |

2013-01-16 | Bhat | General likelihood exploration |

2013-01-16 | RcppExamples | Examples using Rcpp to interface R and C++ |

2013-01-16 | rms.gof | Root-mean-square goodness-of-fit test for simple null hypothesis |

2013-01-16 | setwidth | Set the value of options("width") on terminal emulators |

2013-01-16 | spacodiR | Spatial and Phylogenetic Analysis of Community Diversity |

2013-01-15 | cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |

2013-01-15 | RcppRoll | Fast rolling functions through Rcpp and RcppArmadillo |

2013-01-15 | SMPracticals | Practicals for use with Davison (2003) Statistical Models |

2013-01-14 | ESG | ESG - A package for asset projection |

2013-01-14 | s20x | Stats 20x |

2013-01-14 | samplingbook | Survey Sampling Procedures |

2013-01-14 | subtype | Cluster analysis to find molecular subtypes and their assessment |

2013-01-14 | xoi | Tools for analyzing crossover interference |

2013-01-13 | actuar | Actuarial functions |

2013-01-13 | survivalROC | Time-dependent ROC curve estimation from censored survival data |

2013-01-12 | pass | Prediction and Stability Selection of Tuning Parameters |

2013-01-11 | gtx | Genetics ToolboX |

2013-01-11 | orloca.es | Spanish version of orloca package |

2013-01-09 | BioPhysConnectoR | BioPhysConnectoR |

2013-01-09 | PROTOLIDAR | PRocess TOol LIdar DAta in R |

2013-01-09 | RcmdrPlugin.mosaic | Adds menu items to produce mosaic plots and assoc plots to Rcmdr |

2013-01-09 | Rniftilib | Rniftilib - R Interface to NIFTICLIB (V2.0.0: 2010-07-20) |

2013-01-08 | clusterGeneration | random cluster generation (with specified degree of separation) |

2013-01-08 | HDclassif | High Dimensional Supervised Classification and Clustering |

2013-01-08 | hier.part | Hierarchical Partitioning |

2013-01-08 | RcmdrPlugin.seeg | Rcmdr Plugin for seeg |

2013-01-08 | riskRegression | Risk regression for survival analysis |

2013-01-07 | displayHTS | displayHTS |

2013-01-07 | rJPSGCS | R-interface to gene drop Java Programs for Statistical Genetics and Computational Statistics (JPSGCS) |

2013-01-07 | stacomirtools | stacomi ODBC connection class |

2013-01-06 | DCluster | Functions for the detection of spatial clusters of diseases |

2013-01-05 | ETLUtils | Utility functions to execute standard ETL operations (using package ff) on large data |

2013-01-05 | GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |

2013-01-05 | munfold | Metric Unfolding |

2013-01-05 | Stat2Data | Datasets for Stat2 |

2013-01-04 | proteomicdesign | Optimization of a multi-stage proteomic study |

2013-01-04 | seeg | Statistics for Environmental Sciences, Engineering, and Geography |

2013-01-04 | sparcl | Perform sparse hierarchical clustering and sparse k-means clustering |

2013-01-03 | ldlasso | LD LASSO Regression for SNP Association Study |

2013-01-03 | partialOR | Partial Odds Ratio |

2013-01-02 | bootES | Bootstrap Effect Sizes |

2013-01-02 | royston | Royston's H Test: Multivariate Normality Test |

2012-12-31 | RcmdrPlugin.SM | Rcmdr Sport Management Plug-In |

2012-12-30 | opefimor | Option Pricing and Estimation of Financial Models in R |

2012-12-30 | RcppClassicExamples | Examples using RcppClassic to interface R and C++ |

2012-12-30 | SPSL | Site Percolation on Square Lattice (SPSL) |

2012-12-29 | psytabs | Produce well-formatted tables for psychological research |

2012-12-28 | trapezoid | The Trapezoidal Distribution |

2012-12-27 | bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |

2012-12-27 | fgui | Function GUI |

2012-12-27 | randomizeBE | Function to create a random list for crossover studies |

2012-12-25 | truncgof | GoF tests allowing for left truncated data |

2012-12-24 | MedOr | Median Ordering Statistical R package |

2012-12-24 | MOCCA | Multi-objective optimization for collecting cluster alternatives |

2012-12-23 | RXKCD | Get XKCD comic from R |

2012-12-23 | svmpath | svmpath: the SVM Path algorithm |

2012-12-22 | DiversitySampler | Functions for re-sampling a community matrix to compute diversity indices at different sampling levels |

2012-12-22 | dyn | Time Series Regression |

2012-12-22 | MetaQC | MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis |

2012-12-22 | proto | Prototype object-based programming |

2012-12-21 | BurStMisc | Burns Statistics miscellaneous |

2012-12-21 | imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data |

2012-12-21 | Lock5Data | Datasets for "Statistics: UnLocking the Power of Data" |

2012-12-21 | mvinfluence | Influence Measures and Diagnostic Plots for Multivariate Linear Models |

2012-12-21 | mvnmle | ML estimation for multivariate normal data with missing values |

2012-12-21 | NSA | Post-normalization of total copy numbers |

2012-12-21 | ORMDR | ORMDR |

2012-12-21 | ReCiPa | Redundancy Control in Pathways databases |

2012-12-21 | sperich | Auxiliary functions to estimate centers of biodiversity |

2012-12-20 | hbmem | Hierarchical Bayesian Analysis of Recognition Memory |

2012-12-19 | Kpart | Spline Fitting |

2012-12-19 | LeafAngle | Fits, plots, and summarizes leaf angle distributions |

2012-12-19 | nose | nose Package for R |

2012-12-17 | dblcens | Compute the NPMLE of distribution from doubly censored data |

2012-12-17 | MBESS | MBESS |

2012-12-17 | MFDA | Model Based Functional Data Analysis |

2012-12-16 | WordPools | Classical word pools used in studies of learning and memory |

2012-12-15 | ConjointChecks | A package to check the cancellation axioms of conjoint measurement |

2012-12-15 | cosmoFns | Functions for cosmological distances, times, luminosities, etc |

2012-12-15 | dataframes2xls | dataframes2xls writes data frames to xls files |

2012-12-15 | FastRWeb | Fast Interactive Framework for Web Scripting Using R |

2012-12-15 | LeLogicielR | Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french) |

2012-12-14 | hapsim | Haplotype Data Simulation |

2012-12-14 | ltsa | Linear time series analysis |

2012-12-14 | MuFiCokriging | Multi-Fidelity Cokriging models |

2012-12-14 | Rsolnp | General Non-linear Optimization |

2012-12-13 | seqinr | Biological Sequences Retrieval and Analysis |

2012-12-13 | snowFT | Fault Tolerant Simple Network of Workstations |

2012-12-12 | FinancialInstrument | Financial Instrument Model Infrastructure for R |

2012-12-12 | nutshell | Data for "R in a Nutshell" |

2012-12-12 | nutshell.audioscrobbler | Audioscrobbler data for "R in a Nutshell" |

2012-12-12 | nutshell.bbdb | Baseball Database for "R in a Nutshell" |

2012-12-12 | OptInterim | Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint |

2012-12-11 | IndependenceTests | Nonparametric tests of independence between random vectors |

2012-12-11 | TUWmodel | Lumped hydrological model developed at the Vienna University of Technology for education purposes |

2012-12-10 | ftnonpar | Features and Strings for Nonparametric Regression |

2012-12-10 | ifs | Iterated Function Systems |

2012-12-10 | SampleSizeMeans | Sample size calculations for normal means |

2012-12-08 | Bmix | Bayesian Sampling for Stick-breaking Mixtures |

2012-12-08 | RDIDQ | It perform Quality check on data |

2012-12-08 | rpartScore | Classification trees for ordinal responses |

2012-12-07 | MultinomialCI | Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz |

2012-12-07 | Rdistance | Distance sampling analyses |

2012-12-07 | SvyNom | Nomograms for Right-Censored Outcomes from Survey Designs |

2012-12-06 | stringr | Make it easier to work with strings |

2012-12-05 | gtable | Arrange grobs in tables |

2012-12-05 | simba | A Collection of functions for similarity analysis of vegetation data |

2012-12-04 | glmc | Fitting Generalized Linear Models Subject to Constraints |

2012-12-04 | soilwater | soilwater: Implements parametric formulas for soil water retention or conductivity curve |

2012-12-04 | source.gist | Read R code from a GitHub Gist |

2012-12-03 | KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |

2012-12-03 | muma | Metabolomics Univariate and Multivariate Analysis |

2012-12-02 | brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |

2012-12-02 | emdist | Earth Mover's Distance |

2012-12-02 | fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |

2012-12-01 | ffmanova | Fifty-fifty MANOVA |

2012-12-01 | sybilDynFBA | Dynamic FBA : dynamic flux balance analysis |

2012-11-30 | gcookbook | Data for "R Graphics Cookbook" |

2012-11-30 | operator.tools | Utilities for working with R's operators |

2012-11-28 | goric | Generalized Order-Restricted Information Criterion |

2012-11-28 | LMest | Fit Latent Markov models in basic versions |

2012-11-28 | PenLNM | Group l1 penalized logistic normal multinomial (LNM) regression model |

2012-11-28 | plmm | Partially Linear Mixed Effects Model |

2012-11-27 | bootRes | Bootstrapped Response and Correlation Functions |

2012-11-27 | JASPAR | R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices |

2012-11-27 | TFX | R API to TrueFX(tm) |

2012-11-26 | distfree.cr | Distribution-free confidence region (distfree.cr) |

2012-11-26 | maptree | Mapping, pruning, and graphing tree models |

2012-11-26 | rts | Raster time series analysis |

2012-11-25 | gRc | Inference in Graphical Gaussian Models with Edge and Vertex Symmetries |

2012-11-24 | pairedCI | Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples |

2012-11-24 | stepwise | Stepwise detection of recombination breakpoints |

2012-11-24 | W2CWM2C | The W2CWM2C package is a set of functions to produce new graphical tools for wavelet correlation (bivariate and multivariate cases) using some routines from the waveslim and wavemulcor packages |

2012-11-23 | rvertnet | Search VertNet database from R |

2012-11-21 | rich | Computes and compares species richnesses |

2012-11-20 | ChoiceModelR | Choice Modeling in R |

2012-11-20 | LTPDvar | LTPD and AOQL plans for acceptance sampling inspection by variables |

2012-11-20 | sciplot | Scientific Graphing Functions for Factorial Designs |

2012-11-20 | stppResid | Perform residual analysis on space-time point process models |

2012-11-20 | tnet | tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks |

2012-11-18 | systemfit | Estimating Systems of Simultaneous Equations |

2012-11-17 | BAEssd | Bayesian Average Error approach to Sample Size Determination |

2012-11-17 | HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem |

2012-11-17 | mederrRank | Bayesian Methods for Identifying the Most Harmful Medication Errors |

2012-11-17 | spectralGP | Approximate Gaussian processes using the Fourier basis |

2012-11-15 | epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |

2012-11-15 | PAWL | Implementation of the PAWL algorithm |

2012-11-14 | bindata | Generation of Artificial Binary Data |

2012-11-14 | linLIR | linear Likelihood-based Imprecise Regression |

2012-11-13 | ade4TkGUI | ade4 Tcl/Tk Graphical User Interface |

2012-11-13 | adimpro | Adaptive Smoothing of Digital Images |

2012-11-13 | ismev | An Introduction to Statistical Modeling of Extreme Values |

2012-11-13 | mixcat | Mixed effects cumulative link and logistic regression models |

2012-11-13 | plsdepot | Partial Least Squares (PLS) Data Analysis Methods |

2012-11-13 | stratification | Univariate Stratification of Survey Populations |

2012-11-13 | TSA | Time Series Analysis |

2012-11-11 | egonet | Tool for ego-centric measures in Social Network Analysis |

2012-11-11 | lcd | Learn Chain graphs via Decomposition |

2012-11-11 | nlt | A nondecimated lifting transform for signal denoising |

2012-11-09 | apTreeshape | Analyses of Phylogenetic Treeshape |

2012-11-09 | Rhh | Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation |

2012-11-09 | STAR | Spike Train Analysis with R |

2012-11-08 | mtsdi | Multivariate time series data imputation |

2012-11-08 | rAltmetric | Retrieves altmerics data for any published paper from altmetrics.com |

2012-11-07 | Davies | The Davies quantile function |

2012-11-07 | DSpat | Spatial modelling for distance sampling data |

2012-11-07 | fExoticOptions | Exotic Option Valuation |

2012-11-07 | ResistorArray | electrical properties of resistor networks |

2012-11-07 | waved | Wavelet Deconvolution |

2012-11-06 | adlift | An adaptive lifting scheme algorithm |

2012-11-06 | coda | Output analysis and diagnostics for MCMC |

2012-11-06 | nparcomp | Perform multiple comparisons and compute simultaneous confidence intervals for the nonparametric relative contrast effects |

2012-11-06 | penalized | L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model |

2012-11-06 | vowels | Vowel Manipulation, Normalization, and Plotting |

2012-11-05 | CHsharp | Choi and Hall Clustering in 3d |

2012-11-05 | homtest | Homogeneity tests for Regional Frequency Analysis |

2012-11-05 | scagnostics | Compute scagnostics - scatterplot diagnostics |

2012-11-03 | mcmcplots | Create Plots from MCMC Output |

2012-11-03 | mlica2 | Independent Component Analysis using Maximum Likelihood |

2012-11-03 | tableplot | Represents tables as semi-graphic displays |

2012-11-02 | frmqa | The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance |

2012-11-02 | IDPmisc | Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch) |

2012-11-02 | mratios | Inferences for ratios of coefficients in the general linear model |

2012-11-02 | smirnov | Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book |

2012-11-01 | argosfilter | Argos locations filter |

2012-11-01 | fpow | Computing the noncentrality parameter of the noncentral F distribution |

2012-11-01 | isopam | Isopam (Clustering) |

2012-11-01 | MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |

2012-11-01 | SwissAir | Air Quality Data of Switzerland for one year in 30 min Resolution |

2012-11-01 | xgobi | Interface to the XGobi and XGvis programs for graphical data analysis |

2012-10-31 | dynCorr | Dynamic Correlation Package |

2012-10-31 | NORMT3 | Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t |

2012-10-31 | pbivnorm | Vectorized Bivariate Normal CDF |

2012-10-31 | waveband | Computes credible intervals for Bayesian wavelet shrinkage |

2012-10-30 | Actigraphy | Actigraphy Data Analysis |

2012-10-30 | cat | Analysis of categorical-variable datasets with missing values |

2012-10-30 | cudaBayesregData | Data sets for the examples used in the package "cudaBayesreg" |

2012-10-30 | degenes | Detection of differentially expressed genes |

2012-10-30 | dglm | Double generalized linear models |

2012-10-30 | expsmooth | Data sets from "Forecasting with exponential smoothing" |

2012-10-30 | fma | Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998) |

2012-10-30 | gnumeric | Read data from files readable by gnumeric |

2012-10-30 | ScreenClean | Screen and clean variable selection procedures |

2012-10-30 | speff2trial | Semiparametric efficient estimation for a two-sample treatment effect |

2012-10-30 | waterfall | Waterfall Charts in R |

2012-10-29 | ACCLMA | ACC & LMA Graph Plotting |

2012-10-29 | AdaptFit | Adaptive Semiparametic Regression |

2012-10-29 | Agreement | Statistical Tools for Measuring Agreement |

2012-10-29 | alabama | Constrained nonlinear optimization |

2012-10-29 | allan | Automated Large Linear Analysis Node |

2012-10-29 | allanvar | Allan Variance Analysis |

2012-10-29 | AllPossibleSpellings | Computes all of a word's possible spellings |

2012-10-29 | anapuce | Tools for microarray data analysis |

2012-10-29 | andrews | Andrews curves |

2012-10-29 | anesrake | ANES Raking Implementation |

2012-10-29 | APSIMBatch | Analysis the output of Apsim software |

2012-10-29 | audit | Bounds for Accounting Populations |

2012-10-29 | BaM | Functions and datasets for books by Jeff Gill |

2012-10-29 | batade | HTML reports and so on |

2012-10-29 | bayespref | Hierarchical Bayesian analysis of ecological count data |

2012-10-29 | BayHaz | R Functions for Bayesian Hazard Rate Estimation |

2012-10-29 | bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |

2012-10-29 | betafam | Detecting rare variants for quantitative traits using nuclear families |

2012-10-29 | betaper | Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data |

2012-10-29 | bethel | Bethel's algorithm |

2012-10-29 | BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |

2012-10-29 | bimetallic | Power for SNP analyses using silver standard cases |

2012-10-29 | Biodem | Biodemography functions |

2012-10-29 | biopara | Self-contained parallel system for R |

2012-10-29 | bivarRIpower | Sample size calculations for bivariate longitudinal data |

2012-10-29 | biwt | Functions to compute the biweight mean vector and covariance & correlation matrices |

2012-10-29 | bootspecdens | Testing equality of spectral densities |

2012-10-29 | CARramps | Reparameterized and marginalized posterior sampling for conditional autoregressive models |

2012-10-29 | CCA | Canonical correlation analysis |

2012-10-29 | CCP | Significance Tests for Canonical Correlation Analysis (CCA) |

2012-10-29 | CDFt | Statistical downscaling through CDF-transform |

2012-10-29 | CircStats | Circular Statistics, from "Topics in circular Statistics" (2001) |

2012-10-29 | CMC | Cronbach-Mesbah Curve |

2012-10-29 | colorRamps | Builds color tables |

2012-10-29 | combinat | combinatorics utilities |

2012-10-29 | CombMSC | Combined Model Selection Criteria |

2012-10-29 | comorbidities | Categorizes ICD-9-CM codes based on published comorbidity indices |

2012-10-29 | CompareTests | Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens |

2012-10-29 | compoisson | Conway-Maxwell-Poisson Distribution |

2012-10-29 | concor | Concordance |

2012-10-29 | COP | Variables selection for index models via correlation pursuit |

2012-10-29 | cotrend | Consistant Cotrend Rank Selection |

2012-10-29 | cumSeg | Change point detection in genomic sequences |

2012-10-29 | dbConnect | Provides a graphical user interface to connect with databases that use MySQL |

2012-10-29 | dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |

2012-10-29 | discretization | Data preprocessing, discretization for classification |

2012-10-29 | divagis | Provides tools for quality checks of georeferenced plant species accessions |

2012-10-29 | dpa | Dynamic Path Approach |

2012-10-29 | drm | Regression and association models for repeated categorical data |

2012-10-29 | DTDA | Doubly truncated data analysis |

2012-10-29 | EbayesThresh | Empirical Bayes Thresholding and Related Methods |

2012-10-29 | eigeninv | Generates (dense) matrices that have a given set of eigenvalues |

2012-10-29 | elec | Collection of functions for statistical election audits |

2012-10-29 | EMJumpDiffusion | EM-Algorithm for Jump Diffusion processes |

2012-10-29 | emplik2 | Empirical-likelihood test (two-sample, censored data) |

2012-10-29 | EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |

2012-10-29 | evora | Epigenetic Variable Outliers for Risk prediction Analysis |

2012-10-29 | eyetracking | Eyetracking Helper Functions |

2012-10-29 | FactMixtAnalysis | Factor Mixture Analysis with covariates |

2012-10-29 | FAdist | Distributions that are sometimes used in hydrology |

2012-10-29 | FAwR | Functions and Datasets for "Forest Analytics with R" |

2012-10-29 | fgac | Generalized Archimedean Copula |

2012-10-29 | fit4NM | NONMEM platform |

2012-10-29 | Flury | Data Sets from Flury, 1997 |

2012-10-29 | forensic | Statistical Methods in Forensic Genetics |

2012-10-29 | forward | Forward search |

2012-10-29 | FourScores | FourScores - A game for two players |

2012-10-29 | freqMAP | Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate |

2012-10-29 | frt | Full Randomization Test |

2012-10-29 | FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |

2012-10-29 | GA4Stratification | A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling |

2012-10-29 | GAD | GAD: Analysis of variance from general principles |

2012-10-29 | GANPAdata | The GANPA Datasets Package |

2012-10-29 | gbs | Package for Generalized Birnbaum-Saunders Distributions |

2012-10-29 | GeneF | Package for Generalized F-statistics |

2012-10-29 | GeneReg | Construct time delay gene regulatory network |

2012-10-29 | geomapdata | Data for topographic and Geologic Mapping |

2012-10-29 | gibbs.met | Naive Gibbs Sampling with Metropolis Steps |

2012-10-29 | globalboosttest | Testing the additional predictive value of high-dimensional data |

2012-10-29 | gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto distribution |

2012-10-29 | gwerAM | Controlling the genome-wide type I error rate in association mapping experiments |

2012-10-29 | HadoopStreaming | Utilities for using R scripts in Hadoop streaming |

2012-10-29 | HAPim | HapIM |

2012-10-29 | haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data |

2012-10-29 | heatmap.plus | Heatmap with more sensible behavior |

2012-10-29 | HMR | Flux estimation with static chamber data |

2012-10-29 | holdem | Texas Holdem simulator |

2012-10-29 | homeR | Functions useful for building physics |

2012-10-29 | hotspots | Hot spots |

2012-10-29 | HPbayes | Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling |

2012-10-29 | icomp | ICOMP criterion |

2012-10-29 | igraphtosonia | Convert iGraph graps to SoNIA .son files |

2012-10-29 | Imap | Interactive Mapping |

2012-10-29 | IMIS | Increamental Mixture Importance Sampling |

2012-10-29 | ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method |

2012-10-29 | InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories |

2012-10-29 | insideRODE | insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes |

2012-10-29 | integrOmics | end of integrOmics package |

2012-10-29 | Interpol | Interpolation of amino acid sequences |

2012-10-29 | intRegGOF | Integrated Regression Goodness of Fit |

2012-10-29 | introgress | methods for analyzing introgression between divergent lineages |

2012-10-29 | ISDA.R | interval symbolic data analysis for R |

2012-10-29 | isopat | Calculation of isotopic pattern for a given molecular formula |

2012-10-29 | Julia | Fractal Image Data Generator |

2012-10-29 | klin | Linear equations with Kronecker structure |

2012-10-29 | KsPlot | Check the power of seveal statistical models |

2012-10-29 | kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |

2012-10-29 | lmec | Linear Mixed-Effects Models with Censored Responses |

2012-10-29 | lqa | Penalized Likelihood Inference for GLMs |

2012-10-29 | lss | the accelerated failure time model to right censored data based on least-squares principle |

2012-10-29 | LTR | Perform LTR analysis on microarray data |

2012-10-29 | MAc | Meta-Analysis with Correlations |

2012-10-29 | MAclinical | Class prediction based on microarray data and clinical parameters |

2012-10-29 | mAr | Multivariate AutoRegressive analysis |

2012-10-29 | MBCluster.Seq | Model-Based Clustering for RNA-seq Data |

2012-10-29 | MChtest | Monte Carlo hypothesis tests with Sequential Stopping |

2012-10-29 | metaMA | Meta-analysis for MicroArrays |

2012-10-29 | Miney | Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix) |

2012-10-29 | minxent | Entropy Optimization Distributions |

2012-10-29 | miP | Multiple Imputation Plots |

2012-10-29 | mixdist | Finite Mixture Distribution Models |

2012-10-29 | mixedQF | Estimator with Qudratics Forms in Mixeds Models |

2012-10-29 | MKLE | Maximum kernel likelihood estimation |

2012-10-29 | mpa | CoWords Method |

2012-10-29 | multibiplotGUI | Multibiplot Analysis in R |

2012-10-29 | mvsf | Shapiro-Francia Multivariate Normality Test |

2012-10-29 | NetCluster | Clustering for networks |

2012-10-29 | NetData | Network Data for McFarland's SNA R labs |

2012-10-29 | NightDay | Night and Day Boundary Plot Funtion |

2012-10-29 | nlADG | Regression in the Normal Linear ADG Model |

2012-10-29 | NMFN | Non-negative Matrix Factorization |

2012-10-29 | normwhn.test | Normality and White Noise Testing |

2012-10-29 | NPMPM | tertiary probabilistic model in predictive microbiology for use in food manufacture |

2012-10-29 | nppbib | Nonparametric Partially-Balanced Incomplete Block Design Analysis |

2012-10-29 | OligoSpecificitySystem | Oligo Specificity System |

2012-10-29 | omd | filter the molecular descriptors for QSAR |

2012-10-29 | oncomodel | Maximum likelihood tree models for oncogenesis |

2012-10-29 | OPE | Outer-product emulator |

2012-10-29 | ORDER2PARENT | Estimate parent distributions with data of several order statistics |

2012-10-29 | ORIClust | Order-restricted Information Criterion-based Clustering Algorithm |

2012-10-29 | paleoMAS | Paleoecological Analysis |

2012-10-29 | pamm | Power analysis for random effects in mixed models |

2012-10-29 | parfossil | Parallelized functions for palaeoecological and palaeogeographical analysis |

2012-10-29 | parviol | Parviol |

2012-10-29 | PASWR | PROBABILITY and STATISTICS WITH R |

2012-10-29 | Peaks | Peaks |

2012-10-29 | penalizedSVM | Feature Selection SVM using penalty functions |

2012-10-29 | permtest | Permutation test to compare variability within and distance between two groups |

2012-10-29 | pesticides | Analysis of single serving and composite pesticide residue measurements |

2012-10-29 | pGLS | Generalized Least Square in comparative Phylogenetics |

2012-10-29 | phylotools | Phylogenetic tools for Eco-phylogenetics |

2012-10-29 | PKmodelFinder | Software for Pharmacokinetic model |

2012-10-29 | plsgenomics | PLS analyses for genomics |

2012-10-29 | poistweedie | Poisson-Tweedie exponential family models |

2012-10-29 | PopGenKit | Useful functions for (batch) file conversion and data resampling in microsatellite datasets |

2012-10-29 | ppcor | Partial and Semi-partial (Part) correlation |

2012-10-29 | pps | Functions for PPS sampling |

2012-10-29 | pragma | Provides a pragma / directive / keyword syntax for R |

2012-10-29 | PredictiveRegression | Prediction Intervals for Three Basic Statistical Models |

2012-10-29 | predmixcor | Classification rule based on Bayesian mixture models with feature selection bias corrected |

2012-10-29 | ProbForecastGOP | Probabilistic weather forecast using the GOP method |

2012-10-29 | pwr | Basic functions for power analysis |

2012-10-29 | qlspack | Quasi Least Square Package |

2012-10-29 | qPCR.CT | qPCR data analysis and plot package |

2012-10-29 | qtlDesign | Design of QTL experiments |

2012-10-29 | rdetools | Relevant Dimension Estimation (RDE) in Feature Spaces |

2012-10-29 | reams | Resampling-Based Adaptive Model Selection |

2012-10-29 | Records | Record Values and Record Times |

2012-10-29 | REQS | R/EQS Interface |

2012-10-29 | RHT | Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis |

2012-10-29 | ringscale | Ringscale |

2012-10-29 | rmeta | Meta-analysis |

2012-10-29 | ROCwoGS | Non-parametric estimation of ROC curves without Gold Standard Test |

2012-10-29 | RODM | R interface to Oracle Data Mining |

2012-10-29 | RPyGeo | ArcGIS Geoprocessing in R via Python |

2012-10-29 | Rsundials | Suite of Nonlinear Differential Algebraic Equations Solvers in R |

2012-10-29 | rSymPy | R interface to SymPy computer algebra system |

2012-10-29 | sbgcop | Semiparametric Bayesian Gaussian copula estimation and imputation |

2012-10-29 | sddpack | Semidiscrete Decomposition |

2012-10-29 | sdef | Synthesizing List of Differentially Expressed Features |

2012-10-29 | separationplot | Separation Plots |

2012-10-29 | seqCBS | CN Profiling using Sequencing and CBS |

2012-10-29 | seqmon | Sequential Monitoring of Clinical Trials |

2012-10-29 | seqRFLP | Simulation and visualization of restriction enzyme cutting pattern from DNA sequences |

2012-10-29 | session | Functions for interacting with, saving and restoring R sessions |

2012-10-29 | SiZer | SiZer: Significant Zero Crossings |

2012-10-29 | skewt | The Skewed Student-t Distribution |

2012-10-29 | smco | A simple Monte Carlo optimizer using adaptive coordinate sampling |

2012-10-29 | SMIR | Companion to Statistical Modelling in R |

2012-10-29 | SMVar | Structural Model for variances |

2012-10-29 | SNPmaxsel | Maximally selected statistics for SNP data |

2012-10-29 | spi | Compute SPI index |

2012-10-29 | sporm | Semiparametric proportional odds rate model |

2012-10-29 | sra | Selection Response Analysis |

2012-10-29 | ssanv | Sample Size Adjusted for Nonadherence or Variability of input parameters |

2012-10-29 | ssize.fdr | Sample Size Calculations for Microarray Experiments |

2012-10-29 | Stem | Spatio-temporal models in R |

2012-10-29 | stinepack | Stineman, a consistently well behaved method of interpolation |

2012-10-29 | stratigraph | Toolkit for the plotting and analysis of stratigraphic and palaeontological data |

2012-10-29 | StressStrength | Computation and estimation of reliability of stress-strength models |

2012-10-29 | symbols | Symbol plots |

2012-10-29 | TANOVA | Time Course Analysis of Variance for Microarray |

2012-10-29 | TERAplusB | Test for A+B Traditional Escalation Rule |

2012-10-29 | tfer | Forensic Glass Transfer Probabilities |

2012-10-29 | titan | Titration analysis for mass spectrometry data |

2012-10-29 | TRIANG | Symmetric discrete triangular distributions |

2012-10-29 | TRIANGG | General discrete triangular distribution |

2012-10-29 | trifield | Some basic facilities for ternary fields and plots |

2012-10-29 | trimcluster | Cluster analysis with trimming |

2012-10-29 | tslars | Least angle regression for time series analysis |

2012-10-29 | Tsphere | Transposable Sphering for Large-Scale Inference with Correlated Data |

2012-10-29 | unbalhaar | Function estimation via Unbalanced Haar wavelets |

2012-10-29 | UScensus2000blkgrp | US Census 2000 Block Group Shapefiles and Additional Demographic Data |

2012-10-29 | UScensus2000cdp | US Census 2000 Designated Places Shapefiles and Additional Demographic Data |

2012-10-29 | UScensus2000tract | US Census 2000 Tract Level Shapefiles and Additional Demographic Data |

2012-10-29 | vegetarian | Jost Diversity Measures for Community Data |

2012-10-29 | VIF | VIF Regression: A Fast Regression Algorithm For Large Data |

2012-10-29 | violinmplot | Combination of violin plot with mean and standard deviation |

2012-10-29 | walkscoreAPI | Walk Score and Transit Score API |

2012-10-29 | WaveCD | Wavelet change point detection for array CGH data |

2012-10-29 | wavemulcor | Wavelet routine for multiple correlation |

2012-10-29 | wikibooks | Functions and datasets of the german WikiBook "GNU R" |

2012-10-29 | WilcoxCV | Wilcoxon-based variable selection in cross-validation |

2012-10-29 | wombsoft | Wombling Computation |

2012-10-29 | write.snns | Function for exporting data to SNNS pattern files |

2012-10-29 | wSVM | Weighted SVM with boosting algorithm for improving accuracy |

2012-10-29 | yacca | Yet Another Canonical Correlation Analysis Package |

2012-10-27 | nlmeODE | Non-linear mixed-effects modelling in nlme using differential equations |

2012-10-26 | joineR | Joint modelling of repeated measurements and time-to-event data |

2012-10-25 | locpol | Kernel local polynomial regression |

2012-10-24 | CARE1 | Statistical package for population size estimation in capture-recapture models |

2012-10-24 | dpglasso | Primal Graphical Lasso |

2012-10-23 | pheno | Auxiliary functions for phenological data analysis |

2012-10-23 | RGtk2Extras | Data frame editor and dialog making wrapper for RGtk2 |

2012-10-22 | detrendeR | Start the detrendeR Graphical User Interface (GUI) |

2012-10-22 | landsat | Radiometric and topographic correction of satellite imagery |

2012-10-21 | capme | Covariate Adjusted Precision Matrix Estimation |

2012-10-20 | MBI | (M)ultiple-site (B)iodiversity (I)ndices Calculator |

2012-10-19 | DiscreteInverseWeibull | Discrete inverse Weibull distribution |

2012-10-19 | TwoCop | Nonparametric test of equality between two copulas |

2012-10-18 | breakage | SICM pipette tip geometry estimation |

2012-10-18 | HiPLARM | High Performance Linear Algebra in R |

2012-10-17 | bmk | MCMC diagnostics package |

2012-10-17 | linprog | Linear Programming / Optimization |

2012-10-16 | PhaseType | Inference for Phase-type Distributions |

2012-10-15 | lineup | Lining up two sets of measurements |

2012-10-15 | modeest | Mode Estimation |

2012-10-15 | npde | Normalised prediction distribution errors for nonlinear mixed-effect models |

2012-10-15 | orcutt | Estimate procedure in case of first order autocorrelation |

2012-10-15 | Ridit | Ridit Analysis (An extension of the Kruskal-Wallis Test.) |

2012-10-14 | lda | Collapsed Gibbs sampling methods for topic models |

2012-10-14 | numDeriv | Accurate Numerical Derivatives |

2012-10-12 | ChemometricsWithRData | Data for package ChemometricsWithR |

2012-10-11 | FlexParamCurve | Tools to Fit Flexible Parametric Curves |

2012-10-11 | powerpkg | Power analyses for the affected sib pair and the TDT design |

2012-10-10 | PoissonSeq | Significance analysis of sequencing data based on a Poisson log linear model |

2012-10-08 | expoRkit | Expokit in R |

2012-10-05 | r2stl | r2stl, R package for visualizing data using a 3D printer |

2012-10-05 | Rivivc | In vitro in vivo correlation linear level A |

2012-10-04 | fastSOM | Fast Calculation of Spillover Measures |

2012-10-04 | FRCC | Fast Regularized Canonical Correlation Analysis |

2012-10-04 | freeknotsplines | Free-Knot Splines |

2012-10-04 | rrBlupMethod6 | Re-parametrization of RR-BLUP to allow for a fixed residual variance |

2012-10-03 | rworldxtra | Country boundaries at high resolution |

2012-10-01 | biasbetareg | Bias correction of the parameter estimates of the beta regression model |

2012-10-01 | gbRd | Utilities for processing Rd objects and files |

2012-10-01 | loop | loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |

2012-09-30 | epitools | Epidemiology Tools |

2012-09-29 | astroFns | Astronomy: time and position functions, misc. utilities |

2012-09-29 | trackObjs | Track Objects (last release - package name changed to 'track') |

2012-09-28 | hierarchicalDS | Functions for performing hierarchical analysis of distance sampling data |

2012-09-28 | reccsim | Simulation of Rare Events Case-Control Studies |

2012-09-27 | Brq | Bayesian analysis of quantile regression models |

2012-09-27 | monmlp | Monotone multi-layer perceptron neural network |

2012-09-27 | RWeather | R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs |

2012-09-26 | ccChooser | Developing a core collections |

2012-09-26 | risksetROC | Riskset ROC curve estimation from censored survival data |

2012-09-26 | smcure | Fit Semiparametric Mixture Cure Models |

2012-09-26 | spatgraphs | Graphs for spatial point patterns |

2012-09-25 | emoa | Evolutionary Multiobjective Optimization Algorithms |

2012-09-22 | NonpModelCheck | Model Checking and Variable Selection in Nonparametric Regression |

2012-09-20 | binomialcftp | Generates binomial random numbers via the coupling from the past algorithm |

2012-09-20 | neuralnet | Training of neural networks |

2012-09-20 | tframe | Time Frame coding kernel |

2012-09-19 | epicalc | Epidemiological calculator |

2012-09-19 | namespace | Provide namespace managment functions not (yet) present in base R |

2012-09-19 | nparLD | Nonparametric Analysis of Longitudinal Data in Factorial Experiments |

2012-09-18 | MitISEM | Mixture of Student t Distributions using Importance Sampling and Expectation Maximization |

2012-09-18 | msSurv | Nonparametric Estimation for Multistate Models |

2012-09-17 | Giza | Constructing panels of population pyramid plots based on lattice |

2012-09-15 | abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package |

2012-09-15 | matrixcalc | Collection of functions for matrix calculations |

2012-09-14 | ActuDistns | Functions for actuarial scientists |

2012-09-14 | cslogistic | Conditionally Specified Logistic Regression |

2012-09-14 | DPpackage | Bayesian nonparametric modeling in R |

2012-09-14 | okmesonet | Retrieve Oklahoma Mesonet climatological data |

2012-09-14 | WCQ | Detection of QTL effects in a small mapping population |

2012-09-13 | JavaGD | Java Graphics Device |

2012-09-13 | robfilter | Robust Time Series Filters |

2012-09-13 | spcov | Sparse Estimation of a Covariance Matrix |

2012-09-12 | Sleuth2 | Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd ed)" |

2012-09-11 | BayesNI | BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |

2012-09-11 | CePa | Centrality-based pathway enrichment |

2012-09-10 | hmeasure | The H-measure and other scalar classification performance metrics |

2012-09-10 | paran | Horn's Test of Principal Components/Factors |

2012-09-06 | FMStable | Finite Moment Stable Distributions |

2012-09-06 | NISTnls | Nonlinear least squares examples from NIST |

2012-09-06 | pi0 | Estimating the proportion of true null hypotheses for FDR |

2012-09-05 | hbsae | Hierarchical Bayesian Small Area Estimation |

2012-09-04 | granovaGG | Graphical Analysis of Variance Using ggplot2 |

2012-09-04 | ipdmeta | Tools for subgroup analyses with multiple trial data using aggregate statistics |

2012-09-04 | miniGUI | tktcl quick and simple function GUI |

2012-09-04 | mlPhaser | Multi-Locus Haplotype Phasing |

2012-09-04 | survAUC | Estimators of prediction accuracy for time-to-event data |

2012-09-03 | PIPS | Predicted Interval Plots |

2012-09-02 | pso | Particle Swarm Optimization |

2012-09-01 | openintro | OpenIntro data sets and supplemental functions |

2012-09-01 | sca | Simple Component Analysis |

2012-09-01 | twoStageGwasPower | Compute thresholds and power for two-stage gwas |

2012-08-31 | clusteval | Evaluation of Clustering Algorithms |

2012-08-31 | kSamples | K-Sample Rank Tests and their Combinations |

2012-08-31 | NetComp | Network Generation and Comparison |

2012-08-30 | evd | Functions for extreme value distributions |

2012-08-30 | fmt | Variance estimation of FMT method (Fully Moderated t-statistic) |

2012-08-30 | rbenchmark | Benchmarking routine for R |

2012-08-30 | Sejong | KoNLP static dictionaries and Sejong project resources |

2012-08-29 | MetabolAnalyze | Probabilistic latent variable models for metabolomic data |

2012-08-29 | tightClust | Tight Clustering |

2012-08-28 | logitnorm | Functions for the logitnormal distribution |

2012-08-28 | playwith | A GUI for interactive plots using GTK+ |

2012-08-25 | prabclus | Functions for clustering of presence-absence, abundance and multilocus genetic data |

2012-08-24 | regtest | Regression testing |

2012-08-24 | rindex | Indexing for R |

2012-08-24 | SearchTrees | Spatial Search Trees |

2012-08-24 | seem | Simulation of Ecological and Environmental Models |

2012-08-23 | gaussDiff | Difference measures for multivariate Gaussian probability density functions |

2012-08-23 | muStat | Prentice Rank Sum Test and McNemar Test |

2012-08-23 | Simpsons | Detecting Simpson's Paradox |

2012-08-23 | smoothmest | Smoothed M-estimators for 1-dimensional location |

2012-08-22 | LifeTables | A package to implement HMD model life table system |

2012-08-22 | Rlab | Functions and Datasets Required for ST370 class |

2012-08-22 | samplesize | Sample size calculation for various t-Tests and Wilcoxon-Test |

2012-08-22 | sitools | Format a number to a string with SI prefix |

2012-08-22 | VPdtw | Variable Penalty Dynamic Time Warping |

2012-08-21 | BigTSP | Top Scoring Pair based methods for classification |

2012-08-21 | flashClust | Implementation of optimal hierarchical clustering |

2012-08-21 | labstatR | Libreria del Laboratorio di Statistica con R |

2012-08-20 | quantchem | Quantitative chemical analysis: calibration and evaluation of results |

2012-08-19 | cudia | CUDIA Cross-level Imputation |

2012-08-19 | cxxfunplus | extend cxxfunction by saving the dynamic shared objects |

2012-08-19 | ddst | Data driven smooth test |

2012-08-19 | MATTOOLS | Modern Calibration Functions for the Modern Analog Technique (MAT) |

2012-08-19 | MSG | Data and functions for the book Modern Statistical Graphics |

2012-08-19 | RPCLR | RPCLR (Random-Penalized Conditional Logistic Regression) |

2012-08-17 | arrayhelpers | Convenience functions for arrays |

2012-08-17 | DAKS | Data Analysis and Knowledge Spaces |

2012-08-17 | fechner | Fechnerian Scaling of Discrete Object Sets |

2012-08-17 | PresenceAbsence | Presence-Absence Model Evaluation |

2012-08-17 | SAScii | Import ASCII files directly into R using only a SAS input script |

2012-08-16 | capwire | Estimates population size from non-invasive sampling |

2012-08-16 | lava.tobit | LVM with censored and binary outcomes |

2012-08-15 | treelet | Treelets - an adaptive multi-scale basis for high-dimensional, sparse and unordered data |

2012-08-14 | aspace | A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |

2012-08-14 | binGroup | Evaluation and experimental design for binomial group testing |

2012-08-14 | rHpcc | Interface between HPCC and R |

2012-08-13 | depth | Depth functions tools for multivariate analysis |

2012-08-13 | kerdiest | Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions |

2012-08-13 | SQN | subset quantile normalization |

2012-08-13 | TauP.R | Earthquake Traveltime Calculations for 1-D Earth Models |

2012-08-11 | boostSeq | Optimized GWAS cohort subset selection for resequencing studies |

2012-08-11 | PLIS | Multiplicity control using Pooled LIS statistic |

2012-08-11 | TSEN | Two-dimensional peak sentinel tool for GC x GC-HRTOFMS |

2012-08-10 | asympTest | Asymptotic statistic |

2012-08-10 | IC2 | Inequality and Concentration Indices and Curves |

2012-08-10 | KrigInv | Kriging-based Inversion for Deterministic and Noisy Computer Experiments |

2012-08-10 | MetaDE | MetaDE: Microarray meta-analysis for differentially expressed gene detection |

2012-08-10 | obliqueRF | Oblique Random Forests from Recursive Linear Model Splits |

2012-08-10 | SAFD | Statistical Analysis of Fuzzy Data |

2012-08-09 | bvenn | A Simple alternative to proportional Venn diagrams |

2012-08-09 | BVS | Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |

2012-08-09 | dlmap | Detection Localization Mapping for QTL |

2012-08-09 | FormalSeries | Elementary arithemtic in formal series rings |

2012-08-09 | gridExtra | functions in Grid graphics |

2012-08-09 | modelfree | Model-free estimation of a psychometric function |

2012-08-09 | p2distance | Welfare's Synthetic Indicator |

2012-08-08 | AquaEnv | AquaEnv - an integrated development toolbox for aquatic chemical model generation |

2012-08-08 | fugeR | FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic |

2012-08-07 | semGOF | Goodness-of-fit indexes for structural equation models |

2012-08-06 | mcmcse | Monte Carlo Standard Errors for MCMC |

2012-08-06 | notifyR | Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!) |

2012-08-05 | deamer | Deconvolution density estimation with adaptive methods for a variable prone to measurement error |

2012-08-05 | proj4 | A simple interface to the PROJ.4 cartographic projections library |

2012-08-04 | R2PPT | Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient |

2012-08-03 | crblocks | Categorical Randomized Block Data Analysis |

2012-08-03 | rAverage | Parameter estimation for the averaging model of Information Integration Theory |

2012-08-02 | coexist | Species coexistence modeling and analysis |

2012-08-02 | crn | Downloads and Builds datasets for Climate Reference Network |

2012-08-01 | Runiversal | Runiversal - Package for converting R objects to Java variables and XML |

2012-08-01 | sBF | Smooth Backfitting |

2012-08-01 | TSAgg | Time series Aggregation |

2012-08-01 | visualizationTools | Package contains a few functions to visualize statistical circumstances |

2012-07-31 | gumbel | Gumbel copula |

2012-07-31 | rtape | Manage and manipulate large collections of R objects stored as tape-like files |

2012-07-30 | EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |

2012-07-30 | HyPhy | Macroevolutionary phylogentic analysis of species trees and gene trees |

2012-07-30 | rJython | R interface to Python via Jython |

2012-07-28 | BaylorEdPsych | R Package for Baylor University Educational Psychology Quantitative Courses |

2012-07-28 | gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |

2012-07-27 | OneHandClapping | Prediction of condition-specific transcription factor interactions |

2012-07-27 | PredictABEL | Assessment of risk prediction models |

2012-07-26 | evir | Extreme Values in R |

2012-07-26 | iRegression | Regression methods for interval-valued variables |

2012-07-26 | mbmdr | Model Based Multifactor Dimensionality Reduction |

2012-07-26 | PlayerRatings | Dynamic Updating Methods For Player Ratings Estimation |

2012-07-26 | rneos | rneos: XML-RPC Interface to NEOS |

2012-07-25 | dpmixsim | Dirichlet Process Mixture model simulation for clustering and image segmentation |

2012-07-25 | txtplot | Text based plots |

2012-07-24 | plgp | Particle Learning of Gaussian Processes |

2012-07-24 | relSim | Relative Simulator |

2012-07-23 | c3net | Infering large-scale gene networks with C3NET |

2012-07-23 | cggd | Continuous Generalized Gradient Descent |

2012-07-23 | datamerge | Merging of overlapping and inconsistent data |

2012-07-23 | drawExpression | Visualising R syntax through graphics |

2012-07-23 | FindAllRoots | Find all root(s) of the equation and Find root(s) of the equation by dichotomy |

2012-07-23 | FunCluster | Functional Profiling of Microarray Expression Data |

2012-07-23 | geneListPie | Profiling a gene list into GOslim or KEGG function pie |

2012-07-23 | GExMap | A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data |

2012-07-23 | mcclust | Process an MCMC Sample of Clusterings |

2012-07-23 | ODB | Open Document Databases (.odb) management |

2012-07-23 | parmigene | Parallel Mutual Information estimation for Gene Network reconstruction |

2012-07-23 | schoolmath | Functions and datasets for math used in school |

2012-07-23 | spa | Implements The Sequential Predictions Algorithm |

2012-07-22 | GhcnDaily | Downloads and processes GHCN daily |

2012-07-20 | FRACTION | Numeric number into fraction |

2012-07-20 | obliclus | Cluster-based factor rotation |

2012-07-19 | xtermStyle | Basic text formatting using xterm escape sequences |

2012-07-18 | cncaGUI | Canonical Non-symmetrical Correspondence Analysis in R |

2012-07-18 | elmNN | Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks ) |

2012-07-17 | bspmma | bspmma: Bayesian Semiparametric Models for Meta-Analysis |

2012-07-16 | irr | Various Coefficients of Interrater Reliability and Agreement |

2012-07-13 | crmn | CCMN and other noRMalizatioN methods for metabolomics data |

2012-07-13 | knnGarden | Multi-distance based k-Nearest Neighbors |

2012-07-13 | lhs | Latin Hypercube Samples |

2012-07-12 | CensRegMod | Fitting Normal and Student-t censored regression model |

2012-07-12 | eVenn | eVenn: A powerful tool to compare lists and draw Venn diagrams |

2012-07-12 | UScensus2010 | US Census 2010 Suite of R Packages |

2012-07-11 | DeducerSurvival | Add Survival Dialogue to Deducer |

2012-07-11 | HW.pval | Testing Hardy-Weinberg Equilibrium for Multiallelic Genes |

2012-07-11 | hypothesestest | Confidence Intervals and Tests of Statistical Hypotheses |

2012-07-11 | msr | Morse-Smale approximation, regression and visualization |

2012-07-10 | mlbench | Machine Learning Benchmark Problems |

2012-07-10 | mvtmeta | Multivariate meta-analysis |

2012-07-09 | extraBinomial | Extra-binomial approach for pooled sequencing data |

2012-07-09 | SECP | Statistical Estimation of Cluster Parameters (SECP) |

2012-07-07 | CPE | Concordance Probability Estimates in Survival Analysis |

2012-07-07 | RaschSampler | Rasch Sampler |

2012-07-06 | NLRoot | searching for the root of equation |

2012-07-06 | WMDB | Discriminant Analysis Methods by Weight Mahalanobis Distance and bayes |

2012-07-05 | ncg | Computes the noncentral gamma function |

2012-07-04 | p3state.msm | Analyzing survival data |

2012-07-03 | myepisodes | MyEpisodes RSS/API functions |

2012-07-02 | CR | Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |

2012-07-02 | rCUR | CUR decomposition package |

2012-07-02 | rda | Shrunken Centroids Regularized Discriminant Analysis |

2012-06-29 | packS4 | Toy example of S4 package |

2012-06-28 | elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |

2012-06-28 | RAD | Fit RAD models to biological data |

2012-06-25 | ada | ada: an R package for stochastic boosting |

2012-06-25 | ETAS | Modeling earthquake data using Epidemic Type Aftershock Sequence model |

2012-06-25 | gclus | Clustering Graphics |

2012-06-22 | adaptMCMC | Implementation of a generic adaptive Monte Carlo Markov Chain sampler |

2012-06-22 | mra | Analysis of Mark-Recapture data |

2012-06-21 | ezglm | selects significant non-additive interaction between two variables using fast GLM implementation |

2012-06-21 | psy | Various procedures used in psychometry |

2012-06-20 | batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |

2012-06-20 | Metrics | Evaluation metrics for machine learning |

2012-06-20 | RVideoPoker | Play Video Poker with R |

2012-06-20 | sperrorest | Spatial Error Estimation and Variable Importance |

2012-06-19 | AMAP.Seq | Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |

2012-06-19 | MMIX | Model selection uncertainty and model mixing |

2012-06-19 | sparseLDA | Sparse Discriminant Analysis |

2012-06-18 | tourrGui | A Tour GUI using gWidgets |

2012-06-17 | crossmatch | The Cross-match Test |

2012-06-15 | bisectr | Tools to find bad commits with git bisect |

2012-06-15 | MLEP | Maximum likelihood estimate of penetrance parameters |

2012-06-14 | dummies | Create dummy/indicator variables flexibly and efficiently |

2012-06-14 | sigora | SIGNATURE OVERREPRESENTATION ANALYSIS |

2012-06-13 | clustergas | A hierarchical clustering method based on genetic algorithms |

2012-06-12 | paleoTS | Analyze paleontological time-series |

2012-06-11 | caribou | Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |

2012-06-11 | extrafontdb | Package for holding the database for the extrafont package |

2012-06-09 | rrlda | Robust Regularized Linear Discriminant Analysis |

2012-06-08 | CHCN | Canadian Historical Climate Network |

2012-06-07 | R330 | An R package for Stats 330 |

2012-06-06 | mpMap | Multi-parent RIL genetic analysis |

2012-06-05 | bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |

2012-06-05 | qvcalc | Quasi variances for factor effects in statistical models |

2012-06-05 | RIFS | Random Iterated Function System (RIFS) |

2012-06-04 | MorseGen | Simple raw data generator based on user-specified summary statistics |

2012-06-04 | Voss | Generic Voss algorithm (random sequential additions) |

2012-06-03 | SimpleTable | Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding |

2012-06-01 | BAS | Bayesian Model Averaging using Bayesian Adaptive Sampling |

2012-06-01 | hiPOD | hierarchical Pooled Optimal Design |

2012-06-01 | howmany | A lower bound for the number of correct rejections |

2012-06-01 | quantregForest | Quantile Regression Forests |

2012-06-01 | relaxo | Relaxed Lasso |

2012-05-31 | OIdata | Data sets and supplements (OpenIntro) |

2012-05-30 | foodweb | visualisation and analysis of food web networks |

2012-05-30 | intpoint | linear programming solver by the interior point method and graphically (two dimensions) |

2012-05-30 | nortest | Tests for Normality |

2012-05-29 | genomicper | Circular Genomic Permutation using GWAS p-values of association |

2012-05-28 | disp2D | 2D Hausdorff and Simplex Dispersion Orderings |

2012-05-28 | plus | Penalized Linear Unbiased Selection |

2012-05-26 | multcompView | Visualizations of Paired Comparisons |

2012-05-26 | OpenCL | Interface allowing R to use OpenCL |

2012-05-25 | fgof | Fast Goodness-of-fit Test |

2012-05-25 | Maeswrap | Wrapper functions for MAESTRA/MAESPA |

2012-05-24 | BinNor | Simultaneous generation of multivariate binary and normal variates |

2012-05-24 | WeightedPortTest | Weighted Portmanteau Tests for Time Series Goodness-of-fit |

2012-05-23 | qtutils | Miscellaneous Qt-based utilities |

2012-05-22 | iterLap | Approximate probability densities by iterated Laplace Approximations |

2012-05-19 | irtrees | Estimation of Tree-Based Item Response Models |

2012-05-18 | HTMLUtils | Facilitates automated HTML report creation |

2012-05-18 | makeProject | Creates an empty package framework for the LCFD format |

2012-05-17 | googlePublicData | An R library to build Google's Public Data Explorer DSPL Metadata files |

2012-05-17 | msgps | Degrees of freedom of elastic net, adaptive lasso and generalized elastic net |

2012-05-17 | QUIC | Regularized sparse inverse covariance matrix estimation |

2012-05-17 | simSummary | Simulation summary |

2012-05-16 | bayesm | Bayesian Inference for Marketing/Micro-econometrics |

2012-05-16 | M3 | Reading M3 files |

2012-05-16 | primer | Functions and data for A Primer of Ecology with R |

2012-05-15 | bayesclust | Tests/Searches for significant clusters in genetic data |

2012-05-15 | coxme | Mixed Effects Cox Models |

2012-05-15 | ri | ri: R package for performing randomization-based inference for experiments |

2012-05-14 | cumplyr | Extends ddply to allow calculation of cumulative quantities |

2012-05-14 | cvTools | Cross-validation tools for regression models |

2012-05-13 | SortableHTMLTables | Turns a data frame into an HTML file containing a sortable table |

2012-05-12 | frailtyHL | Frailty Models via H-likelihood |

2012-05-11 | dafs | Data analysis for forensic scientists |

2012-05-10 | bigml | R bindings for the BigML API |

2012-05-09 | plmDE | Additive partially linear models for differential gene expression analysis |

2012-05-08 | AGD | Analysis of Growth Data |

2012-05-08 | iCluster | Integrative clustering of multiple genomic data types |

2012-05-08 | SunterSampling | Sunter's sampling design |

2012-05-07 | CityPlot | Visualization of structure and contents of a database |

2012-05-06 | clime | Constrained L1-minimization for Inverse (covariance) Matrix Estimation |

2012-05-05 | discreteMTP | Multiple testing procedures for discrete test statistics |

2012-05-05 | tensor | Tensor product of arrays |

2012-05-04 | kappalab | Non-additive measure and integral manipulation functions |

2012-05-04 | RSeed | borenstein analysis |

2012-05-03 | CDNmoney | Components of Canadian Monetary and Credit Aggregates |

2012-05-03 | EvalEst | Dynamic Systems Estimation - extensions |

2012-05-02 | lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |

2012-05-02 | rscproxy | statconn: provides portable C-style interface to R (StatConnector) |

2012-05-02 | tsne | T-distributed Stochastic Neighbor Embedding for R (t-SNE) |

2012-05-01 | condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |

2012-04-28 | GUniFrac | Generalized UniFrac distances |

2012-04-27 | weightedKmeans | Weighted KMeans Clustering |

2012-04-25 | superdiag | R Code for Testing Markov Chain Nonconvergence |

2012-04-23 | noia | Implementation of the Natural and Orthogonal InterAction (NOIA) model |

2012-04-21 | labeledLoop | Labeled Loop |

2012-04-20 | dkDNA | Diffusion kernels on a set of genotypes |

2012-04-20 | mritc | MRI tissue classification |

2012-04-19 | bcp | A Package for Performing a Bayesian Analysis of Change Point Problems |

2012-04-18 | VarEff | Variation of effective population size |

2012-04-17 | blighty | United Kingdom coastlines |

2012-04-17 | JohnsonDistribution | Johnson Distribution |

2012-04-16 | GeneCycle | Identification of Periodically Expressed Genes |

2012-04-15 | GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |

2012-04-15 | mseapca | Metabolite set enrichment analysis for factor loading in principal component analysis |

2012-04-13 | DistributionUtils | Distribution Utilities |

2012-04-13 | LIHNPSD | Poisson Subordinated Distribution |

2012-04-13 | scriptests | Transcript-based unit tests that are easy to create and maintain |

2012-04-13 | track | Track Objects |

2012-04-13 | VarianceGamma | The Variance Gamma Distribution |

2012-04-12 | mvnormtest | Normality test for multivariate variables |

2012-04-12 | reweight | Adjustment of Survey Respondent Weights |

2012-04-12 | sROC | Nonparametric Smooth ROC Curves for Continuous Data |

2012-04-11 | mmds | Mixture Model Distance Sampling (mmds) |

2012-04-11 | waffect | A package to simulate constrained phenotypes under a disease model H1 |

2012-04-10 | aod | Analysis of Overdispersed Data |

2012-04-10 | BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |

2012-04-10 | cccrm | CCC-RM |

2012-04-10 | elec.strat | Functions for election audits using stratified random samples |

2012-04-10 | ElemStatLearn | Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman |

2012-04-10 | varbvs | Variational inference for Bayesian variable selection |

2012-04-09 | negenes | Estimating the number of essential genes in a genome |

2012-04-07 | gooJSON | Google JSON Data Interpreter for R |

2012-04-07 | informR | R Tools for Creating Sequence Statistics |

2012-04-06 | bigdata | Big Data Analytics |

2012-04-06 | race | Racing methods for the selection of the best |

2012-04-05 | lordif | Logistic Regression Differential Item Functioning using IRT |

2012-04-04 | BHH2 | Useful Functions for Box, Hunter and Hunter II |

2012-04-04 | corpora | Statistics and data sets for corpus frequency data |

2012-04-04 | Fahrmeir | Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz |

2012-04-04 | SenSrivastava | Datasets from Sen & Srivastava |

2012-04-03 | changeLOS | Change in LOS |

2012-04-03 | FinAsym | Classifies implicit trading activity from market quotes and computes the probability of informed trading |

2012-04-03 | zipfR | Statistical models for word frequency distributions |

2012-04-02 | apsrtable | apsrtable model-output formatter for social science |

2012-04-02 | gldist | An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution |

2012-03-31 | powerSurvEpi | Power and sample size calculation for survival analysis of epidemiological studies |

2012-03-31 | RcmdrPlugin.epack | Rcmdr plugin for time series |

2012-03-30 | fossil | Palaeoecological and Palaeogeographical Analysis Tools |

2012-03-30 | gridDebug | Debugging Grid Graphics |

2012-03-30 | gridGraphviz | Drawing Graphs with Grid |

2012-03-30 | nacopula | Nested Archimedean Copulas |

2012-03-29 | ICSNP | Tools for Multivariate Nonparametrics |

2012-03-28 | WWGbook | Functions and datasets for WWGbook |

2012-03-27 | gamair | Data for "GAMs: An Introduction with R" |

2012-03-27 | GPArotation | GPA Factor Rotation |

2012-03-27 | setRNG | Set (Normal) Random Number Generator and Seed |

2012-03-26 | DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |

2012-03-26 | FBN | FISH Based Normalization and Copy Number inference of SNP microarray data |

2012-03-26 | mlgt | Multi-Locus Geno-Typing |

2012-03-24 | MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling |

2012-03-23 | BSDA | Basic Statistics and Data Analysis |

2012-03-23 | eigenmodel | Semiparametric factor and regression models for symmetric relational data |

2012-03-23 | filehashSQLite | Simple key-value database using SQLite |

2012-03-23 | SPA3G | SPA3G: R package for the method of Li and Cui (2012) |

2012-03-23 | TRAMPR | TRFLP Analysis and Matching Package for R |

2012-03-22 | ISwR | Introductory Statistics with R |

2012-03-22 | mixlow | mixlow method for assessing drug synergism |

2012-03-21 | lle | Locally linear embedding |

2012-03-21 | MCAPS | MCAPS data and results |

2012-03-21 | mvtsplot | Multivariate Time Series Plot |

2012-03-21 | pseudo | Pseudo - observations |

2012-03-21 | represent | Determine the representativity of two multidimensional data sets |

2012-03-21 | stashR | A Set of Tools for Administering SHared Repositories |

2012-03-20 | BLR | Bayesian Linear Regression |

2012-03-20 | popbio | Construction and analysis of matrix population models |

2012-03-20 | QuantPsyc | Quantitative Psychology Tools |

2012-03-19 | ALS | multivariate curve resolution alternating least squares (MCR-ALS) |

2012-03-19 | AUCRF | Variable Selection with Random Forest and the Area Under the Curve |

2012-03-19 | merror | Accuracy and Precision of Measurements |

2012-03-19 | mgpd | mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II) |

2012-03-19 | nnls | The Lawson-Hanson algorithm for non-negative least squares (NNLS) |

2012-03-19 | qp | q-order partial correlation graph search algorithm |

2012-03-18 | LCAextend | Latent Class Analysis (LCA) with familial dependence in extended pedigrees |

2012-03-18 | PSAgraphics | Propensity Score Analysis Graphics |

2012-03-17 | DeducerPlugInExample | Deducer Plug-in Example |

2012-03-17 | DeducerPlugInScaling | Reliability and factor analysis plugin |

2012-03-16 | bmd | Benchmark dose analysis for dose-response data |

2012-03-16 | R2wd | Write MS-Word documents from R |

2012-03-16 | truncdist | Truncated Random Variables |

2012-03-15 | gee | Generalized Estimation Equation solver |

2012-03-15 | VarSwapPrice | Pricing a variance swap on an equity index |

2012-03-14 | PKgraph | Model diagnostics for population pharmacokinetic models |

2012-03-14 | stockPortfolio | Build stock models and analyze stock portfolios |

2012-03-12 | MDR | Detect gene-gene interactions using multifactor dimensionality reduction |

2012-03-12 | zipcode | U.S. ZIP Code database for geocoding |

2012-03-11 | klausuR | Multiple Choice Test Evaluation |

2012-03-09 | qLearn | Estimation and inference for Q-learning |

2012-03-08 | eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |

2012-03-07 | JPSurv | Methods for population-based cancer survival analysis |

2012-03-07 | tabuSearch | R based tabu search algorithm |

2012-03-06 | malaria.em | EM Estimation of Malaria Haplotype Probabilities from Multiply Infected Human Blood Samples |

2012-03-05 | soobench | Single Objective Optimization Benchmark Functions |

2012-03-04 | AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts |

2012-03-03 | qtbase | Interface between R and Qt |

2012-03-03 | qtpaint | Qt-based painting infrastructure |

2012-03-01 | CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |

2012-03-01 | curvetest | The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities |

2012-03-01 | rBeta2009 | The Beta Random Number and Dirichlet Random Vector Generating Functions |

2012-02-29 | benchden | 28 benchmark densities from Berlinet/Devroye (1994) |

2012-02-27 | superpc | Supervised principal components |

2012-02-21 | RMallow | Fit Multi-Modal Mallows' Models to ranking data |

2012-02-20 | barcode | Barcode distribution plots |

2012-02-20 | ops | Optimal Power Space Transformation |

2012-02-20 | YaleToolkit | Data exploration tools from Yale University |

2012-02-19 | perturb | Tools for evaluating collinearity |

2012-02-17 | capushe | Capushe, data-driven slope estimation and dimension jump |

2012-02-17 | WideLM | Fitting many skinny linear models to a single data set |

2012-02-16 | chemometrics | Multivariate Statistical Analysis in Chemometrics |

2012-02-15 | gamlss.nl | Fitting non linear parametric GAMLSS models |

2012-02-13 | dispmod | Dispersion models |

2012-02-11 | idbg | R debugger |

2012-02-10 | pairheatmap | A tool for comparing heatmaps |

2012-02-08 | genridge | Generalized ridge trace plots for ridge regression |

2012-02-08 | readMLData | Reading machine learning benchmark data sets from different sources in their original format |

2012-02-07 | udunits2 | udunits-2 bindings for R |

2012-02-06 | futile.paradigm | A framework for working in a functional programming paradigm in R |

2012-02-06 | rdatamarket | Data access API for DataMarket.com |

2012-02-05 | SCperf | Supply Chain Perform |

2012-02-03 | lmbc | Linear Model Bias Correction for RNA-Seq Data |

2012-02-02 | DiscreteLaplace | Discrete Laplace distribution |

2012-02-02 | neuRosim | Functions to generate fMRI data including activated data, noise data and resting state data |

2012-02-02 | rlecuyer | R interface to RNG with multiple streams |

2012-01-31 | bayesMCClust | Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering |

2012-01-31 | rstream | Streams of random numbers |

2012-01-31 | vacem | Vaccination Activities Coverage Estimation Model |

2012-01-30 | Rwinsteps | Running Winsteps in R |

2012-01-30 | semdiag | Structural equation modeling diagnostics |

2012-01-28 | geotools | Geo tools |

2012-01-28 | tlmec | Linear Student-t Mixed-Effects Models with Censored Data |

2012-01-27 | MIPHENO | Mutant Identification through Probabilistic High throughput Enabled NOrmalization |

2012-01-24 | CALINE3 | R interface to Fortran 77 implementation of CALINE3 |

2012-01-24 | moments | Moments, cumulants, skewness, kurtosis and related tests |

2012-01-24 | occ | Estimates PET neuroreceptor occupancies |

2012-01-24 | registry | Registry infrastructure |

2012-01-23 | rasclass | Supervised Raster Image Classification |

2012-01-22 | SEER2R | reading and writing SEER*STAT data files |

2012-01-21 | fastmatch | Fast match() function |

2012-01-20 | apple | Approximate Path for Penalized Likelihood Estimators |

2012-01-18 | cytoDiv | Cytometric diversity indices |

2012-01-17 | ifa | Independent Factor Analysis |

2012-01-17 | RMySQL | R interface to the MySQL database |

2012-01-17 | rngwell19937 | WELL19937a random number generator implemented with 53 bit output |

2012-01-16 | DBGSA | methods of distance-based gene set functional enrichment analysis |

2012-01-15 | GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |

2012-01-15 | Lmoments | L-moments and quantile mixtures |

2012-01-15 | PKPDmodels | Pharmacokinetic/pharmacodynamic models |

2012-01-14 | cepp | Context Driven Exploratory Projection Pursuit |

2012-01-13 | eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |

2012-01-13 | lga | Tools for linear grouping analysis (LGA) |

2012-01-13 | pgam | Poisson-Gamma Additive Models |

2012-01-13 | randaes | Random number generator based on AES cipher |

2012-01-12 | intReg | Interval Regression |

2012-01-12 | lisp | List-processing à la SRFI-1 |

2012-01-12 | rstiefel | Random orthonormal matrix generation on the Stiefel manifold |

2012-01-09 | wccsom | SOM networks for comparing patterns with peak shifts |

2012-01-07 | events | Store and manipulate event data |

2012-01-07 | latticeDensity | Density estimation and nonparametric regression on irregular regions |

2012-01-07 | ucminf | General-purpose unconstrained non-linear optimization |

2012-01-06 | rportfolios | Random portfolio generation |

2012-01-05 | hett | Heteroscedastic t-regression |

2012-01-05 | MImix | Mixture summary method for multiple imputation |

2012-01-04 | mcbiopi | Matrix Computation Based Identification Of Prime Implicants |

2012-01-03 | AWS.tools | R package to use Amazon Web Services |

2012-01-03 | GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |

2012-01-03 | rpsychi | Statistics for psychiatric research |

2011-12-30 | cin | Causal Inference for Neuroscience |

2011-12-30 | fame | Interface for FAME time series database |

2011-12-30 | wasim | Visualisation and analysis of output files of the hydrological model WASIM |

2011-12-28 | ADGofTest | Anderson-Darling GoF test |

2011-12-28 | biglars | Scalable Least-Angle Regression and Lasso |

2011-12-27 | onion | octonions and quaternions |

2011-12-23 | curvHDR | curvHDR filtering of flow cytometry samples |

2011-12-23 | ktspair | k-Top Scoring Pairs for Microarray Classification |

2011-12-21 | kriging | Ordinary Kriging |

2011-12-20 | nFactors | Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test |

2011-12-19 | Holidays | Holiday and halfday data, for use with the TimeWarp package |

2011-12-16 | DECIDE | DEComposition of Indirect and Direct Effects |

2011-12-16 | spaceExt | Extension of SPACE |

2011-12-15 | ascrda | Augmented SCRDA |

2011-12-13 | objectProperties | A factory of self-describing properties |

2011-12-11 | EMC | Evolutionary Monte Carlo (EMC) algorithm |

2011-12-11 | EMCC | Evolutionary Monte Carlo (EMC) methods for clustering |

2011-12-11 | SMC | Sequential Monte Carlo (SMC) Algorithm |

2011-12-09 | PairViz | Visualization using Eulerian tours and Hamiltonian decompositions |

2011-12-08 | bamdit | Bayesian Meta-Analysis of diagnostic test data |

2011-12-08 | ThresholdROC | Optimum threshold estimation based on cost function in a two and three state setting |

2011-12-03 | base64 | Base 64 encoder/decoder |

2011-12-02 | supclust | Supervised Clustering of Predictor Variables such as Genes |

2011-12-01 | OrdMonReg | Compute least squares estimates of one bounded or two ordered isotonic regression curves |

2011-11-30 | plugdensity | Plug-in Kernel Density Estimation |

2011-11-29 | modehunt | Multiscale Analysis for Density Functions |

2011-11-29 | qtlbook | Datasets for the R/qtl book |

2011-11-28 | dse1 | DSE (unbundled transition package) |

2011-11-28 | dse2 | DSE (unbundled transition package) |

2011-11-27 | abind | Combine multi-dimensional arrays |

2011-11-27 | RSVGTipsDevice | An R SVG graphics device with dynamic tips and hyperlinks |

2011-11-27 | tkrgl | TK widget tools for rgl package |

2011-11-25 | mpm | Multivariate Projection Methods |

2011-11-24 | WMCapacity | GUI implementing Bayesian working memory models |

2011-11-22 | Survgini | The Gini concentration test for survival data |

2011-11-21 | migui | Graphical User Interface of the mi Package |

2011-11-19 | ProfileLikelihood | Profile Likelihood for a Parameter in Commonly Used Statistical Models |

2011-11-19 | tkrplot | TK Rplot |

2011-11-17 | liso | Fitting lasso penalised additive isotone models |

2011-11-16 | PhysicalActivity | Process Physical Activity Accelerometer Data |

2011-11-16 | SynergizeR | Interface to The Synergizer service for translating between sets of biological identifiers |

2011-11-16 | SyNet | Inference and Analysis of Sympatry Networks |

2011-11-13 | itsmr | Time series analysis package for students |

2011-11-13 | mvProbit | Multivariate Probit Models |

2011-11-10 | recommenderlabBX | Book-Crossing Dataset (BX) for recommenderlab |

2011-11-10 | recommenderlabJester | Jester Dataset for recommenderlab |

2011-11-07 | RArcInfo | Functions to import data from Arc/Info V7.x binary coverages |

2011-11-04 | cmrutils | Misc Functions of the Center for the Mathematical Research |

2011-11-04 | NPsimex | Nonparametric Smoothing for contaminated data using Simulation-Extrapolation |

2011-11-03 | LSD | Lots of Superior Depictions |

2011-11-03 | Sending Email Notifications from R | |

2011-11-02 | EL | Two-sample Empirical Likelihood |

2011-11-02 | nlrwr | Nonlinear regression with R |

2011-11-02 | rationalfun | Manipulation of Rational Functions |

2011-10-28 | objectSignals | objectSignals |

2011-10-27 | alr3 | Data to accompany Applied Linear Regression 3rd edition |

2011-10-26 | emma | Evolutionary model-based multiresponse approach |

2011-10-23 | AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific annotation file |

2011-10-23 | webvis | Create graphics for the web from R |

2011-10-20 | lspls | LS-PLS Models |

2011-10-20 | MultEq | Multiple Equivalence Tests and Simultaneous Confidence Intervals |

2011-10-17 | relimp | Relative Contribution of Effects in a Regression Model |

2011-10-10 | RJaCGH | Reversible Jump MCMC for the analysis of CGH arrays |

2011-10-04 | remix | Remix your data |

2011-10-01 | weightedScores | Weighted scores method for regression with dependent data |

2011-09-30 | dhglm | Double Hierarchical Generalized Linear Models |

2011-09-29 | ascii | Export R objects to several markup languages |

2011-09-29 | stremo | Functions to help the process of learning structural equation modelling |

2011-09-10 | McParre | Run a Regenerative Markov chain in Parallel on a Cluster |

2011-09-10 | NBDdirichlet | NBD-Dirichlet model of consumer buying behavior for marketing research |

2011-09-08 | mseq | Modeling non-uniformity in short-read rates in RNA-Seq data |

2011-09-07 | ISOweek | Week of the year and weekday according to ISO 8601 |

2011-09-02 | fork | R functions for handling multiple processes |

2011-08-30 | rJavax | rJava extensions |

2011-08-28 | viopoints | 1-D Scatter Plots with Jitter Using Kernel Density Estimates |

2011-08-18 | ieeeround | Functions to set and get the IEEE rounding mode |

2011-08-17 | features | Feature Extraction for Discretely-Sampled Functional Data |

2011-08-14 | RcmdrPlugin.doex | Rcmdr plugin for Stat 4309 course |

2011-08-12 | CITAN | CITation ANalysis toolpack |

2011-08-12 | dfoptim | Derivative-free Optimization |

2011-08-12 | fun | Use R for Fun |

2011-08-12 | hybridHclust | Hybrid hierarchical clustering |

2011-08-12 | MCMChybridGP | Hybrid Markov chain Monte Carlo using Gaussian Processes |

2011-08-10 | venneuler | Venn and Euler Diagrams |

2011-08-09 | binomTools | Performing diagnostics on binomial regression models |

2011-08-08 | lmmfit | Goodness-of-fit-measures for linear mixed models with one-level-grouping |

2011-08-08 | mxkssd | Efficient mixed-level k-circulant supersaturated designs |

2011-08-08 | REEMtree | Regression Trees with Random Effects for Longitudinal (Panel) Data |

2011-08-06 | LargeRegression | Large Regressions |

2011-08-05 | DAGGER | Consensus genetic maps |

2011-08-05 | mkssd | Efficient multi-level k-circulant supersaturated designs |

2011-08-04 | SPIAssay | A genetic-based assay for the identification of cell lines |

2011-07-28 | dae | Functions useful in the design and ANOVA of experiments |

2011-07-28 | r2lh | R to LaTeX and HTML |

2011-07-28 | soma | General-purpose optimisation with the Self-Organising Migrating Algorithm |

2011-07-27 | fwdmsa | Forward search for Mokken scale analysis |

2011-07-23 | CLSOCP | A smoothing Newton method SOCP solver |

2011-07-23 | minimax | Minimax distribution family |

2011-07-23 | s4vd | Biclustering via sparse singular value decomposition incorporating stability selection |

2011-07-19 | pixmap | Bitmap Images (“Pixel Maps”) |

2011-07-18 | B2Z | Bayesian Two-Zone Model |

2011-07-18 | MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks |

2011-07-06 | GPseq | gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments |

2011-07-06 | limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |

2011-06-29 | enrichvs | Enrichment assessment of virtual screening approaches |

2011-06-29 | samr | SAM: Significance Analysis of Microarrays |

2011-06-17 | LGS | simulating Linkage Group Selection (LGS) |

2011-06-17 | RColorBrewer | ColorBrewer palettes |

2011-06-15 | longmemo | Statistics for Long-Memory Processes (Jan Beran) – Data and Functions |

2011-06-15 | MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data |

2011-06-03 | orthogonalsplinebasis | Orthogonal Bspline Basis Functions |

2011-05-31 | reshapeGUI | A GUI for the reshape2 and plyr packages |

2011-05-29 | GANPA | Gene Association Network-based Pathway Analysis |

2011-05-26 | gtcorr | Calculate efficiencies of group testing algorithms with correlated responses |

2011-05-18 | Kendall | Kendall rank correlation and Mann-Kendall trend test |

2011-05-18 | pear | Package for Periodic Autoregression Analysis |

2011-05-17 | gcExplorer | Graphical Cluster Explorer |

2011-05-11 | COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |

2011-05-02 | phyext | An extension of some of the classes in phylobase. Tree objects now support subnodes on branches |

2011-04-26 | cobs | COBS – Constrained B-splines (Sparse matrix based) |

2011-04-26 | MAPLES | Smoothed age profile estimation |

2011-04-24 | fftw | Fast FFT and DCT based on FFTW |

2011-04-24 | SPECIES | Statistical package for species richness estimation |

2011-04-15 | lmmlasso | Linear mixed-effects models with Lasso |

2011-04-13 | brew | Templating Framework for Report Generation |

2011-04-13 | mrdrc | Model-robust concentration-response analysis |

2011-04-09 | NRAIA | Data sets from "Nonlinear Regression Analysis and Its Applications" |

2011-04-06 | lcda | Latent Class Discriminant Analysis |

2011-03-29 | penalizedLDA | Penalized classification using Fisher's linear discriminant |

2011-03-26 | BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data |

2011-03-26 | qualV | Qualitative Validation Methods |

2011-03-21 | metacor | Meta-analysis of correlation coefficients |

2011-03-09 | compeir | Event-specific incidence rates for competing risks data |

2011-02-24 | fpca | Restricted MLE for Functional Principal Components Analysis |

2011-02-22 | MUCflights | Munich Franz-Josef-Strauss Airport Pattern Analysis |

2011-02-21 | beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |

2011-02-18 | Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |

2011-02-11 | MMST | DATASETS FROM MMST |

2011-02-11 | PoMoS | Polynomial (ordinary differential equation) Model Search |

2011-01-29 | cmaes | Covariance Matrix Adapting Evolutionary Strategy |

2011-01-24 | outliers | Tests for outliers |

2011-01-23 | multxpert | Common Multiple Testing Procedures and Gatekeeping Procedures |

2011-01-20 | darts | Statistical Tools to Analyze Your Darts Game |

2011-01-15 | esotericR | esotericR articles from lemnica.com |

2011-01-13 | SVMMaj | SVMMaj algorithm |

2011-01-11 | scout | Implements the Scout method for Covariance-Regularized Regression |

2011-01-11 | topmodel | Implementation of the hydrological model TOPMODEL in R |

2011-01-03 | english | Translate integers into English |

2011-01-03 | extremevalues | Univariate outlier detection |

2011-01-03 | factualR | thin wrapper for the Factual.com server API |

2011-01-03 | neariso | Near-Isotonic Regression |

2011-01-03 | reliaR | Package for some probability distributions |

2010-12-16 | orQA | Order Restricted Assessment Of Microarray Titration Experiments |

2010-12-06 | dcv | Conventional Cross-validation statistics for climate-growth model |

2010-12-01 | tensorA | Advanced tensors arithmetic with named indices |

2010-11-08 | RMC | Functions for fitting Markov models |

2010-11-03 | aster2 | Aster Models |

2010-10-28 | varSelRF | Variable selection using random forests |

2010-10-27 | inference | Functions to extract inferential values of a fitted model object |

2010-10-26 | RunuranGUI | A GUI for the UNU.RAN random variate generators |

2010-10-20 | fANCOVA | Nonparametric Analysis of Covariance |

2010-10-04 | rocc | ROC based classification |

2010-10-01 | genepi | Genetic Epidemiology Design and Inference |

2010-09-29 | factorQR | Bayesian quantile regression factor models |

2010-09-17 | laercio | Duncan test, Tukey test and Scott-Knott test |

2010-09-15 | rpud | R functions for computation on GPU |

2010-09-09 | SE.IGE | Standard errors of estimated genetic parametes |

2010-09-02 | SMCP | Smoothed minimax concave penalization (SMCP) method for genome-wide association studies |

2010-08-25 | ecoreg | Ecological regression using aggregate and individual data |

2010-08-23 | PET | Simulation and Reconstruction of PET Images |

2010-08-11 | classGraph | Construct Graphs of S4 Class Hierarchies |

2010-08-08 | psychometric | Applied Psychometric Theory |

2010-08-06 | hexView | Viewing Binary Files |

2010-07-31 | MVpower | Give power for a given effect size using multivariate classification methods |

2010-07-30 | FieldSim | Random fields simulations |

2010-07-29 | EnQuireR | A package dedicated to questionnaires |

2010-07-29 | perm | Exact or Asymptotic permutation tests |

2010-07-26 | stepPlr | L2 penalized logistic regression with a stepwise variable selection |

2010-07-24 | MCPMod | Design and Analysis of Dose-Finding Studies (see also DoseFinding package) |

2010-07-24 | PolynomF | Polynomials in R |

2010-07-07 | mlmmm | ML estimation under multivariate linear mixed models with missing values |

2010-07-01 | someKfwer | Controlling the Generalized Familywise Error Rate |

2010-06-25 | RNCBIEUtilsLibs | EUtils libraries for use in the R environment |

2010-06-20 | ttutils | Utility functions |

2010-05-23 | SEL | Semiparametric elicitation |

2010-05-22 | rrules | Generic rule engine for R |

2010-05-07 | cgh | Microarray CGH analysis using the Smith-Waterman algorithm |

2010-05-07 | imprProbEst | Minimum distance estimation in an imprecise probability model |

2010-05-01 | ProDenICA | Product Density Estimation for ICA using tilted Gaussian density estimates |

2010-04-25 | BMN | The pseudo-likelihood method for pairwise binary markov networks |

2010-04-14 | identity | Jacquard Condensed Coefficients of Identity |

2010-04-14 | space | Sparse PArtial Correlation Estimation |

2010-04-13 | nws | R functions for NetWorkSpaces and Sleigh |

2010-04-12 | tpr | Temporal Process Regression |

2010-04-07 | som | Self-Organizing Map |

2010-04-06 | futile.options | Futile options management |

2010-04-05 | AIM | AIM: adaptive index model |

2010-04-03 | polycor | Polychoric and Polyserial Correlations |

2010-04-02 | endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous Selection |

2010-04-02 | pmlr | Penalized Multinomial Logistic Regression |

2010-03-16 | haarfisz | Software to perform Haar Fisz transforms |

2010-03-09 | rsprng | R interface to SPRNG (Scalable Parallel Random Number Generators) |

2010-03-08 | far | Modelization for Functional AutoRegressive processes |

2010-02-16 | ic50 | Standardized high-throughput evaluation of cell-based compound screens |

2010-02-11 | CausalGAM | Estimation of Causal Effects with Generalized Additive Models |

2010-02-07 | stam | Spatio-Temporal Analysis and Modelling |

2010-02-03 | GWRM | GWRM |

2010-02-03 | scrapeR | Tools for Scraping Data from HTML and XML Documents |

2010-02-01 | dynamicGraph | dynamicGraph |

2010-01-28 | fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R |

2010-01-26 | BoSSA | a Bunch of Structure and Sequence Analysis |

2010-01-13 | blockmodeling | An R package for Generalized and classical blockmodeling of valued networks |

2010-01-10 | HMM | HMM - Hidden Markov Models |

2010-01-04 | GSA | Gene set analysis |

2010-01-03 | mix | Estimation/multiple Imputation for Mixed Categorical and Continuous Data |

2009-12-24 | histogram | Construction of regular and irregular histograms with different options for automatic choice of bins |

2009-12-17 | jointDiag | Joint Approximate Diagonalization of a set of square matrices |

2009-12-17 | SampleSizeProportions | Calculating sample size requirements when estimating the difference between two binomial proportions |

2009-12-16 | marginalmodelplots | Marginal Mean Model Plots |

2009-12-03 | datamap | A system for mapping foreign objects to R variables and environments |

2009-11-25 | LogitNet | Infer network based on binary arrays using regularized logistic regression |

2009-11-22 | dvfBm | Discrete variations of a fractional Brownian motion |

2009-11-17 | DRI | DR-Integrator |

2009-11-13 | corcounts | Generate correlated count random variables |

2009-10-27 | rela | Item Analysis Package with Standard Errors |

2009-10-16 | adaptTest | Adaptive two-stage tests |

2009-10-15 | bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |

2009-10-14 | RMTstat | Distributions, Statistics and Tests derived from Random Matrix Theory |

2009-10-12 | grouped | Regression Analysis of Grouped and Coarse Data |

2009-10-11 | moduleColor | Basic module functions |

2009-10-11 | packClassic | Toy example of Pack Classic |

2009-10-08 | PKtools | unified computational interfaces for pop PK |

2009-09-28 | EQL | Extended-Quasi-Likelihood-Function (EQL) |

2009-09-23 | HyperbolicDist | The hyperbolic distribution |

2009-09-06 | its | Irregular Time Series |

2009-08-30 | km.ci | Confidence intervals for the Kaplan-Meier estimator |

2009-08-08 | crantastic | Various R tools for http://crantastic.org/ |

2009-08-02 | latdiag | Draws diagrams useful for checking latent scales |

2009-06-29 | PearsonICA | Independent component analysis using score functions from the Pearson system |

2009-06-29 | spatcounts | Spatial count regression |

2009-06-14 | svcm | 2d and 3d Space-Varying Coefficient Models |

2009-06-08 | HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques |

2009-06-07 | cghFLasso | Detecting hot spot on CGH array data with fused lasso regression |

2009-06-04 | bootStepAIC | Bootstrap stepAIC |

2009-05-18 | odfWeave.survey | Support for odfWeave on the survey package |

2009-05-05 | leaps | regression subset selection |

2009-05-05 | luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |

2009-05-05 | SEMModComp | Model Comparisons for SEM |

2009-04-28 | mcsm | Functions for Monte Carlo Methods with R |

2009-04-15 | uniCox | Univarate shrinkage prediction in the Cox model |

2009-03-24 | ars | Adaptive Rejection Sampling |

2009-03-23 | plotpc | Plot principal component histograms around a scatter plot |

2009-03-01 | clusterRepro | Reproducibility of gene expression clusters |

2009-02-25 | hdeco | Hierarchical DECOmposition of Entropy for Categorical Map Comparisons |

2009-02-25 | sac | Semiparametric Analysis of Changepoint |

2009-02-24 | spe | Stochastic Proximity Embedding |

2009-02-01 | CreditMetrics | Functions for calculating the CreditMetrics risk model |

2009-02-01 | Reliability | Functions for estimating parameters in software reliability models |

2009-01-30 | ETC | Equivalence to control |

2009-01-29 | convexHaz | Nonparametric MLE/LSE of convex hazard |

2009-01-29 | kin.cohort | Analysis of kin-cohort studies |

2009-01-17 | remMap | Regularized Multivariate Regression for Identifying Master Predictors |

2008-12-16 | mixPHM | Mixtures of proportional hazard models |

2008-11-08 | foba | greedy variable selection |

2008-10-28 | kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |

2008-10-02 | expert | Modeling without data using expert opinion |

2008-09-28 | goalprog | Weighted and lexicographical goal programming and optimization |

2008-09-08 | pack | Convert values to/from raw vectors |

2008-09-03 | hlr | Hidden Logistic Regression |

2008-08-13 | RM2 | Revenue Management and Pricing Package |

2008-07-16 | bark | Bayesian Additive Regresssion Kernels |

2008-06-23 | SASPECT | Significant AnalysiS of PEptide CounTs |

2008-06-09 | LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |

2008-05-02 | boa | Bayesian Output Analysis Program (BOA) for MCMC |

2008-05-02 | simpleboot | Simple Bootstrap Routines |

2008-04-29 | poilog | Poisson lognormal and bivariate Poisson lognormal distribution |

2007-11-06 | mFilter | Miscellaneous time series filters |

2007-10-16 | fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |

2006-08-19 | powell | Powell's UObyQA algorithm |

2006-05-24 | allelic | A fast, unbiased and exact allelic exact test |

2006-03-30 | BayesValidate | BayesValidate Package |

2006-03-15 | coxrobust | Robust Estimation in Cox Model |

2005-10-29 | vioplot | Violin plot |