biom: An interface package (beta) for the BIOM file format

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

Version: 0.3.12
Depends: R (≥ 3.0.0), methods
Imports: plyr (≥ 1.8), RJSONIO (≥ 1.0.3), Matrix (≥ 1.0.12)
Suggests: testthat (≥ 0.7.1), knitr (≥ 1.3)
Published: 2014-02-24
Author: Paul J. McMurdie and the biom-format team http://biom-format.org/
Maintainer: Paul J. McMurdie <mcmurdie at stanford.edu>
BugReports: https://github.com/joey711/biom/issues
License: GPL-2
URL: https://github.com/joey711/biom/, http://biom-format.org/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: biom results

Downloads:

Reference manual: biom.pdf
Vignettes: BIOM support in R main vignette
Package source: biom_0.3.12.tar.gz
OS X binary: biom_0.3.12.tgz
Windows binary: biom_0.3.12.zip
Old sources: biom archive

Reverse dependencies:

Reverse suggests: qiimer