This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.
|Depends:||R (≥ 3.0.0), methods|
|Imports:||plyr (≥ 1.8), RJSONIO (≥ 1.0.3), Matrix (≥ 1.0.12)|
|Suggests:||testthat (≥ 0.7.1), knitr (≥ 1.3)|
|Author:||Paul J. McMurdie and the biom-format team http://biom-format.org/|
|Maintainer:||Paul J. McMurdie <mcmurdie at stanford.edu>|
|CRAN checks:||biom results|
BIOM support in R main vignette
|Windows binaries:||r-devel: biom_0.3.12.zip, r-release: biom_0.3.12.zip, r-oldrel: biom_0.3.12.zip|
|OS X Mavericks binaries:||r-release: biom_0.3.12.tgz, r-oldrel: biom_0.3.12.tgz|
|Old sources:||biom archive|
Please use the canonical form https://CRAN.R-project.org/package=biom to link to this page.