bios2mds: From Biological Sequences to Multidimensional Scaling

Utilities dedicated to the analysis of biological sequences by metric MultiDimensional Scaling with projection of supplementary data. It contains functions for reading multiple sequence alignment files, calculating distance matrices, performing metric multidimensional scaling and visualizing results.

Version: 1.2.3
Depends: R (≥ 3.6.0), amap, e1071, scales, cluster, rgl
Published: 2020-04-07
Author: Julien Pele with Jean-Michel Becu, Rym Ben Boubaker, Herve Abdi, and Marie Chabbert
Maintainer: Marie Chabbert <marie.chabbert at univ-angers.fr>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
Materials: ChangeLog
CRAN checks: bios2mds results

Documentation:

Reference manual: bios2mds.pdf

Downloads:

Package source: bios2mds_1.2.3.tar.gz
Windows binaries: r-devel: bios2mds_1.2.3.zip, r-release: bios2mds_1.2.3.zip, r-oldrel: bios2mds_1.2.3.zip
macOS binaries: r-release (arm64): bios2mds_1.2.3.tgz, r-release (x86_64): bios2mds_1.2.3.tgz, r-oldrel: bios2mds_1.2.3.tgz
Old sources: bios2mds archive

Linking:

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