ccChooser can be used to developing and evaluation of core collections for germplasm collections (entire collection). This package used to develop a core collection for biological resources like genbanks. A core collection is defined as a sample of accessions that represent, with the lowest possible level of redundancy, the genetic diversity (the richness of gene or genotype categories) of the entire collection. The establishing a core collection that represents genetic diversity of the entire collection with minimum loss of its original diversity and minimum redundancies is an important problem for gene-banks curators and crop breeders. ccChooser establish core collection base on phenotypic data (agronomic, morphological, phenological).
|Depends:||R (≥ 2.14.1), cluster (≥ 1.13.1)|
|Author:||Marcin Studnicki and Konrad Debski|
|Maintainer:||Marcin Studnicki <marcin_studnicki at sggw.pl>|
|License:||GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]|
|CRAN checks:||ccChooser results|
|Windows binaries:||r-devel: ccChooser_0.2.6.zip, r-release: ccChooser_0.2.6.zip, r-oldrel: ccChooser_0.2.6.zip|
|OS X El Capitan binaries:||r-release: ccChooser_0.2.6.tgz|
|OS X Mavericks binaries:||r-oldrel: ccChooser_0.2.6.tgz|
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