chromoR: Analysis of chromosomal interactions data (correction, segmentation and comparison)

chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.

Version: 1.0
Depends: R (≥ 2.15.2), haarfisz, gdata
Published: 2014-02-11
Author: Yoli Shavit
Maintainer: Yoli Shavit <ys388 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: chromoR results

Downloads:

Reference manual: chromoR.pdf
Package source: chromoR_1.0.tar.gz
Windows binaries: r-devel: chromoR_1.0.zip, r-release: chromoR_1.0.zip, r-oldrel: chromoR_1.0.zip
OS X Snow Leopard binaries: r-release: chromoR_1.0.tgz, r-oldrel: chromoR_1.0.tgz
OS X Mavericks binaries: r-release: chromoR_1.0.tgz