coala: A Framework for Coalescent Simulation

Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results. It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'.

Version: 0.5.0
Depends: R (≥ 3.1.0)
Imports: assertthat (≥ 0.1), digest, methods, parallel, R6 (≥ 2.0.1), Rcpp (≥ 0.11.0), rehh (≥ 2.0.0), scrm (≥ 1.6.0-2), stats, utils
LinkingTo: Rcpp, RcppArmadillo (≥ 0.3.810.0)
Suggests: abc (≥ 2.0), knitr, PopGenome (≥ 2.1.0), phyclust (≥ 0.1-16), rmarkdown, testthat (≥ 0.11.0)
Published: 2016-12-29
Author: Paul Staab [aut, cre], Dirk Metzler [aut, ths], Jorge E. Amaya Romero [ctb]
Maintainer: Paul Staab <develop at paulstaab.de>
BugReports: https://github.com/statgenlmu/coala/issues
License: MIT + file LICENSE
URL: https://github.com/statgenlmu/coala
NeedsCompilation: yes
Citation: coala citation info
Materials: README NEWS
CRAN checks: coala results

Downloads:

Reference manual: coala.pdf
Vignettes: Using coala for ABC
Calculating Summary Statistics for Genetic Data
Examples
Extending coala
Installing ms, msms and seqgen
Introduction
Package source: coala_0.5.0.tar.gz
Windows binaries: r-devel: coala_0.5.0.zip, r-release: coala_0.5.0.zip, r-oldrel: coala_0.5.0.zip
OS X El Capitan binaries: r-release: coala_0.5.0.tgz
OS X Mavericks binaries: r-oldrel: coala_0.5.0.tgz
Old sources: coala archive

Reverse dependencies:

Reverse suggests: jaatha

Linking:

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