coda: Output Analysis and Diagnostics for MCMC

Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.

Version: 0.17-1
Depends: R (≥ 2.14.0)
Imports: lattice
Published: 2015-03-03
Author: Martyn Plummer [aut, cre, trl], Nicky Best [aut], Kate Cowles [aut], Karen Vines [aut], Deepayan Sarkar [aut], Douglas Bates [aut], Russell Almond [aut]
coda author details
Maintainer: Martyn Plummer <plummerm at iarc.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: coda citation info
Materials: README ChangeLog
In views: Bayesian, gR
CRAN checks: coda results

Downloads:

Reference manual: coda.pdf
Package source: coda_0.17-1.tar.gz
Windows binaries: r-devel: coda_0.17-1.zip, r-release: coda_0.17-1.zip, r-oldrel: coda_0.16-1.zip
OS X Snow Leopard binaries: r-release: coda_0.17-1.tgz, r-oldrel: coda_0.17-1.tgz
OS X Mavericks binaries: r-release: coda_0.17-1.tgz
Old sources: coda archive

Reverse dependencies:

Reverse depends: adaptMCMC, adaptsmoFMRI, anominate, B2Z, BaM, bamdit, BANOVA, BayesComm, bayesDccGarch, BayesFactor, bayesGARCH, BayesLCA, bayespref, BayesSAE, bayesSurv, Bayesthresh, bayou, BAYSTAR, Bergm, BEST, bisoreg, bmk, boral, coalescentMCMC, codadiags, cplm, dclone, eiPack, elrm, endorse, evolvability, FME, gemtc, HSROC, HybridMC, hzar, iFad, IsotopeR, MasterBayes, mcgibbsit, MCMCglmm, MCMCpack, mcmcplots, MCMC.qpcr, mcsm, metamisc, PhaseType, phcfM, phenology, popReconstruct, prevalence, qtlbim, R2MLwiN, R2WinBUGS, ramps, rjags, season, siar, SPACECAP, spatial.gev.bma, spBayes, spTimer, stocc, stochvol, superdiag, TESS, WMCapacity, zic, zoib
Reverse imports: arm, BANFF, bayescount, bayesLife, bayesmix, BayesSingleSub, bayesTFR, BayesX, Bchron, bfa, BRugs, btf, BTSPAS, CARBayes, CARBayesST, conting, dcmle, EasyMARK, eggCounts, eiwild, emdbook, ergm, geiger, geoBayes, hierarchicalDS, HLSM, hSDM, IFP, jagsUI, kobe, latentnet, list, marked, mixAK, MplusAutomation, MRH, MSBVAR, networkTomography, nLTT, plotMCMC, polySegratioMM, pomp, R2jags, R2OpenBUGS, r4ss, RcmdrPlugin.RMTCJags, RMark, rr, runjags, SAVE, scape, sirt, sisus, slfm, sns, spBayesSurv, spdep, spikeSlabGAM, TBSSurvival, tdm, tergm, xergm
Reverse suggests: AdMit, amen, BayHaz, bcp, bglm, bnormnlr, CARramps, CARrampsOcl, embryogrowth, GeneFeST, geoCount, geoRglm, ggmcmc, ltbayes, MethComp, pscl, R2admb, R2BayesX, rbugs, relevent, surveillance, Zelig, zoo