coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1101/2021.02.23.432421>.

Version: 5.1.0
Depends: R (≥ 2.10)
Imports: data.table, ggplot2, methods, viridis, stats, grDevices, susieR (≥ 0.11.33), utils
Suggests: knitr, testthat, snpStats, mvtnorm, magrittr, rmarkdown
Published: 2021-06-14
Author: Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Maintainer: Chris Wallace <cew54 at cam.ac.uk>
BugReports: https://github.com/chr1swallace/coloc/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://github.com/chr1swallace/coloc
NeedsCompilation: no
Citation: coloc citation info
Materials: README NEWS
CRAN checks: coloc results

Documentation:

Reference manual: coloc.pdf
Vignettes: Coloc: a package for colocalisation analyses
Coloc: data structures
Coloc: under a single causal variant assumption
Coloc: sensitivity to prior values
DEPRECATED Coloc: relaxing the single causal variant assumption
Coloc: using SuSiE to relax the single causal variant assumption

Downloads:

Package source: coloc_5.1.0.tar.gz
Windows binaries: r-devel: coloc_5.1.0.zip, r-release: coloc_5.1.0.zip, r-oldrel: coloc_5.1.0.zip
macOS binaries: r-release (arm64): coloc_5.1.0.tgz, r-release (x86_64): coloc_5.1.0.tgz, r-oldrel: coloc_5.1.0.tgz
Old sources: coloc archive

Reverse dependencies:

Reverse imports: RapidoPGS

Linking:

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