compendiumdb: Tools for Retrieval and Storage of Functional Genomics Data

Package for the systematic retrieval and storage of functional genomics data via a MySQL database.

Version: 1.0.3
Depends: Biobase, GEOquery, RMySQL
Imports: methods
Suggests: inSilicoDb, genefilter, GEOmetadb, gplots, GSVA, limma, mogene10sttranscriptcluster.db, RColorBrewer
Published: 2015-10-12
Author: Umesh K. Nandal and Perry D. Moerland
Maintainer: Umesh Nandal <u.k.nandal at amc.uva.nl>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://wiki.bioinformaticslaboratory.nl/foswiki/bin/view/BioLab/CompendiumDB
NeedsCompilation: no
SystemRequirements: Perl (>=5), MySQL (>=5.6)
Materials: INSTALL
CRAN checks: compendiumdb results

Downloads:

Reference manual: compendiumdb.pdf
Package source: compendiumdb_1.0.3.tar.gz
Windows binaries: r-devel: compendiumdb_1.0.3.zip, r-release: compendiumdb_1.0.3.zip, r-oldrel: compendiumdb_1.0.3.zip
OS X Mavericks binaries: r-release: compendiumdb_1.0.3.tgz, r-oldrel: compendiumdb_1.0.3.tgz
Old sources: compendiumdb archive

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