comradesOO: Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data

Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.

Version: 0.1.1
Depends: seqinr, GenomicRanges, stats
Imports: ggplot2, reshape2, MASS, mixtools, utils, S4Vectors, doParallel, igraph, R4RNA, RColorBrewer, IRanges, foreach, grDevices, heatmap3, TopDom, tidyverse, RRNA, ggrepel, methods, parallel
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2023-11-10
Author: Jonathan Price [aut, cre]
Maintainer: Jonathan Price <jlp76 at cam.ac.uk>
BugReports: https://github.com/JLP-BioInf/comradesOO/issues
License: GPL-3
NeedsCompilation: no
Citation: comradesOO citation info
Materials: README
CRAN checks: comradesOO results

Documentation:

Reference manual: comradesOO.pdf
Vignettes: comradessOO

Downloads:

Package source: comradesOO_0.1.1.tar.gz
Windows binaries: r-devel: comradesOO_0.1.1.zip, r-release: comradesOO_0.1.1.zip, r-oldrel: comradesOO_0.1.1.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available
Old sources: comradesOO archive

Linking:

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