corHMM: Analysis of Binary Character Evolution

Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.

Version: 1.18
Depends: ape, nloptr, GenSA
Imports: expm, numDeriv, corpcor, phangorn, parallel
Published: 2016-01-07
Author: Jeremy M. Beaulieu, Jeffrey C. Oliver, Brian O'Meara
Maintainer: Jeremy Beaulieu <jbeaulieu at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: corHMM results


Reference manual: corHMM.pdf
Package source: corHMM_1.18.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: corHMM_1.18.tgz, r-oldrel: corHMM_1.18.tgz
Old sources: corHMM archive

Reverse dependencies:

Reverse imports: OUwie