corHMM: Analysis of binary character evolution

Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.

Version: 1.14
Depends: ape, nloptr, parallel
Imports: expm, numDeriv, corpcor, phangorn, rgenoud
Published: 2014-07-11
Author: Jeremy M. Beaulieu, Jeffrey C. Oliver, Brian O'Meara
Maintainer: Jeremy Beaulieu <jbeaulieu at nimbios.org>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: corHMM results

Downloads:

Reference manual: corHMM.pdf
Package source: corHMM_1.14.tar.gz
Windows binaries: r-devel: corHMM_1.14.zip, r-release: corHMM_1.14.zip, r-oldrel: corHMM_1.14.zip
OS X Snow Leopard binaries: r-release: corHMM_1.14.tgz, r-oldrel: corHMM_1.14.tgz
OS X Mavericks binaries: r-release: corHMM_1.14.tgz
Old sources: corHMM archive