corHMM: Analysis of binary character evolution

Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.

Version: 1.15
Depends: ape, nloptr
Imports: expm, numDeriv, corpcor, phangorn, rgenoud, parallel
Published: 2014-09-18
Author: Jeremy M. Beaulieu, Jeffrey C. Oliver, Brian O'Meara
Maintainer: Jeremy Beaulieu <jbeaulieu at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: corHMM results


Reference manual: corHMM.pdf
Package source: corHMM_1.15.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: corHMM_1.15.tgz, r-oldrel: corHMM_1.15.tgz
OS X Mavericks binaries: r-release: corHMM_1.15.tgz
Old sources: corHMM archive