deconstructSigs: Identifies Signatures Present in a Tumor Sample

Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.

Version: 1.8.0
Imports: reshape2, BSgenome, BSgenome.Hsapiens.UCSC.hg19, GenomeInfoDb, grDevices, graphics, utils
Suggests: VariantAnnotation
Published: 2016-07-29
Author: Rachel Rosenthal
Maintainer: Rachel Rosenthal <rachel.rosenthal.14 at ucl.ac.uk>
BugReports: https://github.com/raerose01/deconstructSigs/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/raerose01/deconstructSigs
NeedsCompilation: no
Materials: README NEWS
CRAN checks: deconstructSigs results

Downloads:

Reference manual: deconstructSigs.pdf
Package source: deconstructSigs_1.8.0.tar.gz
Windows binaries: r-devel: deconstructSigs_1.8.0.zip, r-release: deconstructSigs_1.8.0.zip, r-oldrel: deconstructSigs_1.8.0.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: deconstructSigs_1.8.0.tgz
Old sources: deconstructSigs archive

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