diveRsity: A Comprehensive, General Purpose Population Genetics Analysis
Allows the calculation of both genetic diversity partition
statistics,genetic differentiation statistics and locus
informativeness for ancestry assignment. It also provides users
with various option to calculate bootstrapped 95% confidence
intervals both across loci, for pairwise population comparisons
and to plot these results interactively. V1.2 and up provides
parallel computing capabilities and pairwise results without
bootstrapping. Weir and Cockerham's 1984 F-statistics are now
also calculated. Various plotting features are also provided.
Chi-square tests of genetic heterogeneity are also provided.
Functionality for the calculation of various diversity
parameters is also possible for RAD-seq derived SNP data sets
containing thousands of marker loci. A shiny application for
the development of microsatellite multiplexes is also available