diveRsity: diveRsity: Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In

diveRsity is a package which allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95% confidence intervals both across loci, for pairwise population comparisons and to plot these results interactively. V1.2 and up provides parallel computing capabilities and pairwise results without bootstrapping. Weir and Cockerham's 1984 F-statistics are now also calculated. Various plotting features are also provided. Chi-square tests of genetic heterogeneity are also provided. Functionality for the calculation of various diversity parameters is also possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available

Version: 1.9.5
Depends: R (≥ 3.0.0)
Imports: ggplot2, shiny, qgraph, Rcpp
LinkingTo: Rcpp
Suggests: xlsx, sendplot, plotrix, foreach, iterators, doParallel, parallel
Published: 2014-04-29
Author: Kevin Keenan
Maintainer: Kevin Keenan <kkeenan02 at qub.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://diversityinlife.weebly.com/
NeedsCompilation: yes
Citation: NA
Materials: NA
CRAN checks: diveRsity results

Downloads:

Reference manual: diveRsity.pdf
Vignettes: diveRsity
Package source: diveRsity_1.9.5.tar.gz
Windows binaries: r-devel: diveRsity_1.9.5.zip, r-release: diveRsity_1.9.5.zip, r-oldrel: diveRsity_1.9.5.zip
OS X Snow Leopard binaries: r-release: diveRsity_1.9.5.tgz, r-oldrel: diveRsity_1.9.5.tgz
OS X Mavericks binaries: r-release: diveRsity_1.9.5.tgz
Old sources: diveRsity archive