diversitree: Comparative 'Phylogenetic' Analyses of Diversification

Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.

Version: 0.9-9
Depends: R (≥ 2.10), methods, ape
Imports: deSolve (≥ 1.7), graphics, grDevices, stats, subplex, Rcpp (≥ 0.10.0)
LinkingTo: Rcpp
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
Published: 2016-10-05
Author: Richard G. FitzJohn, with 'GeoSSE' and 'ClaSSE' by Emma E. Goldberg, and 'BiSSE-ness' by Karen Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.zoology.ubc.ca/prog/diversitree
NeedsCompilation: yes
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Citation: diversitree citation info
Materials: README ChangeLog
In views: Phylogenetics
CRAN checks: diversitree results


Reference manual: diversitree.pdf
Package source: diversitree_0.9-9.tar.gz
Windows binaries: r-devel: diversitree_0.9-9.zip, r-release: diversitree_0.9-9.zip, r-oldrel: diversitree_0.9-9.zip
OS X Mavericks binaries: r-release: diversitree_0.9-9.tgz, r-oldrel: diversitree_0.9-9.tgz
Old sources: diversitree archive

Reverse dependencies:

Reverse suggests: hisse


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