dynamicSDM: Species Distribution and Abundance Modelling at High Spatio-Temporal Resolution

A collection of novel tools for generating species distribution and abundance models (SDM) that are dynamic through both space and time. These highly flexible functions incorporate spatial and temporal aspects across key SDM stages; including when cleaning and filtering species occurrence data, generating pseudo-absence records, assessing and correcting sampling biases and autocorrelation, extracting explanatory variables and projecting distribution patterns. Throughout, functions utilise Google Earth Engine and Google Drive to minimise the computing power and storage demands associated with species distribution modelling at high spatio-temporal resolution.

Version: 1.2
Depends: R (≥ 3.5.0)
Imports: dplyr, geodist, geosphere, googledrive, lubridate, magrittr, raster, reticulate, rgee, sp, spThin, stats, tidyr, grDevices, graphics, methods, utils, sf, readr
Suggests: ape, CoordinateCleaner, covr, gargle, gbm, ggplot2, knitr, magick, matrixStats, rmarkdown, stars, testthat (≥ 3.0.0), viridis
Published: 2023-03-17
Author: Rachel Dobson ORCID iD [aut, cre, ctb], Andy J. Challinor ORCID iD [aut, ctb], Robert A. Cheke ORCID iD [aut, ctb], Stewart Jennings ORCID iD [aut, ctb], Stephen G. Willis ORCID iD [aut, ctb], Martin Dallimer ORCID iD [aut, ctb]
Maintainer: Rachel Dobson <eerdo at leeds.ac.uk>
BugReports: https://github.com/r-a-dobson/dynamicSDM/issues
License: GPL (≥ 3)
URL: https://github.com/r-a-dobson/dynamicSDM
NeedsCompilation: no
Materials: README
CRAN checks: dynamicSDM results


Reference manual: dynamicSDM.pdf
Vignettes: dynamicSDM: Response variable data
dynamicSDM: Explanatory variable data
dynamicSDM: Model fitting and autocorrelation
dynamicSDM: Dynamic distribution projections


Package source: dynamicSDM_1.2.tar.gz
Windows binaries: r-devel: dynamicSDM_1.2.zip, r-release: dynamicSDM_1.2.zip, r-oldrel: dynamicSDM_1.2.zip
macOS binaries: r-release (arm64): dynamicSDM_1.2.tgz, r-oldrel (arm64): dynamicSDM_1.2.tgz, r-release (x86_64): dynamicSDM_1.2.tgz, r-oldrel (x86_64): dynamicSDM_1.2.tgz
Old sources: dynamicSDM archive


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