expoTree: Calculate density dependent likelihood of a phylogenetic tree

Calculates the density dependent likelihood of a phylogenetic tree. It takes branching and sampling times as an argument and integrates the likelihood function over the whole tree.

Version: 1.0.1
Depends: R (≥ 2.12.0), ape, deSolve
Published: 2013-09-03
Author: Gabriel E Leventhal, partly adapted from MATLAB code by Awad H. Al-Mohy and using the routines DLNAC1 and DLARPC by Sheung Hun Cheng, and DLAPST from ScaLAPACK.
Maintainer: Gabriel E Leventhal <gabriel at leventhal.ch>
License: BSD_3_clause + file LICENCE
NeedsCompilation: yes
Materials: README ChangeLog
In views: Phylogenetics
CRAN checks: expoTree results

Downloads:

Reference manual: expoTree.pdf
Package source: expoTree_1.0.1.tar.gz
Windows binaries: r-devel: expoTree_1.0.1.zip, r-release: expoTree_1.0.1.zip, r-oldrel: expoTree_1.0.1.zip
OS X Snow Leopard binaries: r-release: expoTree_1.0.1.tgz, r-oldrel: expoTree_1.0.1.tgz
OS X Mavericks binaries: r-release: expoTree_1.0.1.tgz
Old sources: expoTree archive