fishflux: Model Elemental Fluxes in Fishes

Model fluxes of carbon, nitrogen, and phosphorus with the use of a coupled bioenergetics and stoichiometric model that incorporates flexible elemental limitation. Additional functions to help the user to find parameters are included. Finally, functions to extract and visualize results are available as well. For an introduction, see vignette. For more information on the theoretical background of this model, see Schiettekatte et al. (2020) <doi:10.1111/1365-2435.13618>.

Depends: R (≥ 3.6.0)
Imports: methods, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.0.0), parallel, dplyr, fishualize, ggplot2, plyr, rfishbase, tidybayes, tidyr
LinkingTo: BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥, RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0)
Suggests: knitr, rmarkdown, testthat, covr
Published: 2020-07-08
Author: Nina M. D. Schiettekatte [aut, cre], Diego Barneche [aut]
Maintainer: Nina M. D. Schiettekatte <nina.schiettekatte at>
License: MIT + file LICENSE
NeedsCompilation: yes
SystemRequirements: GNU make
Citation: fishflux citation info
Materials: README
CRAN checks: fishflux results


Reference manual: fishflux.pdf
Vignettes: Intro to fishflux
Package source: fishflux_0.0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: fishflux_0.0.1.1.tgz, r-oldrel: fishflux_0.0.1.1.tgz
Old sources: fishflux archive


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