func2vis: Clean and Visualize Over Expression Results from 'ConsensusPathDB'

Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.

Version: 1.0-1
Depends: ggplot2, igraph, devtools, ggrepel, grDevices, R (≥ 3.6)
Published: 2020-08-10
Author: Raghvendra Mall [aut, cre]
Maintainer: Raghvendra Mall <rmall at hbku.edu.qa>
License: GPL (≥ 3)
NeedsCompilation: yes
CRAN checks: func2vis results

Downloads:

Reference manual: func2vis.pdf
Package source: func2vis_1.0-1.tar.gz
Windows binaries: r-devel: func2vis_1.0-1.zip, r-release: func2vis_1.0-1.zip, r-oldrel: func2vis_1.0-1.zip
macOS binaries: r-release: func2vis_1.0-1.tgz, r-oldrel: func2vis_1.0-1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=func2vis to link to this page.