genBart: Generate 'BART' File

A set of functions to generate and format results from statistical analyses of a wide range of high throughput experiments that can then be uploaded into the 'BART' (Bio-Statistical Analysis Reporting Tool) 'shiny' app <https://github.com/jcardenas14/BART>. The app provides users with tools to visualize and efficiently sift through large amounts of data and results.

Version: 1.0.1
Depends: R (≥ 3.4.0)
Imports: clValid (≥ 0.6-6), data.table (≥ 1.10.4), fastcluster (≥ 1.1.22), ggplot2 (≥ 2.2.1), grid (≥ 3.3.3), gtools (≥ 3.5.0), limma (≥ 3.30.13), NMF (≥ 0.20.6), pca3d (≥ 0.10), psych (≥ 1.7.3.21), qusage (≥ 2.6.1), RColorBrewer (≥ 1.1-2), reshape2 (≥ 1.4.2), rmarkdown (≥ 1.5), scales (≥ 0.4.1), shiny (≥ 1.0.3), shinydashboard (≥ 0.5.3), shinyjs (≥ 0.9), statmod (≥ 1.2.2), stats (≥ 3.3.3), stringr (≥ 1.2.0), tools (≥ 3.3.3), VennDiagram (≥ 1.6.17)
Suggests: DESeq2 (≥ 1.14.1), edgeR (≥ 3.16.5), knitr (≥ 1.15.1), SummarizedExperiment (≥ 1.1.6), testthat
Published: 2018-03-13
Author: Jacob Cardenas [aut, cre], Jacob Turner [aut], Derek Blankenship [aut]
Maintainer: Jacob Cardenas <jacob.cardenas at bswhealth.org>
License: GPL-2 | GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: genBart results

Downloads:

Reference manual: genBart.pdf
Vignettes: genBart package Vignette
Package source: genBart_1.0.1.tar.gz
Windows binaries: r-devel: genBart_1.0.1.zip, r-release: genBart_1.0.1.zip, r-oldrel: genBart_1.0.1.zip
OS X binaries: r-release: genBart_1.0.1.tgz, r-oldrel: genBart_1.0.1.tgz
Old sources: genBart archive

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